TCONS_00040233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040233
Unique NameTCONS_00040233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040233 ID=TCONS_00040233|Name=TCONS_00040233|organism=Clytia hemisphaerica|type=transcript|length=518bp
GAAAAAGGAACCGCCCACCAATACGTTTATAGAACCTCTTCTCGAGGATC
TCTTATGTTCGTGGAATGGAGAGATGCCTATGAATACATACTCCTCCCCA
ATACTTGAAGTACCAGTGAAAGTCATGCTCCTCCTTGTTGGTTGTGATAT
AGCTGCATGTAGGAAACTATGTGGGTTTTTAGGACACGCAGCGACGATGG
GTTGCTCACGTTGTTGTAAAAAGTTTCTCGGAAGAGTCGGTCAGAAAGAT
GGAAAAGACTGCTCCGGATTTGATACAGAGAATTGGACCGCACGAACAGG
GGAGACACACCGCCAGCAGATGATTGAAATCATGGGTAAAACTACCAAAA
CCGAAAGAGAAGAGTTAGAGAGCAAATATGGAACTCGATACAGTTCGTTG
GTTCGGCTTCCATACTATGATTCCGTACGTTTTGCTATCATTGATCTGAT
GCACAATCTTTTCCTCGGAACAGCCAAAAAGATGATCAGCGTGTGGAAag
atgaaaagtttttaaata
Run BLAST on NCBI

protein sequence of TCONS_00040233-protein

>TCONS_00040233-protein ID=TCONS_00040233-protein|Name=TCONS_00040233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
KKEPPTNTFIEPLLEDLLCSWNGEMPMNTYSSPILEVPVKVMLLLVGCDI
AACRKLCGFLGHAATMGCSRCCKKFLGRVGQKDGKDCSGFDTENWTARTG
ETHRQQMIEIMGKTTKTEREELESKYGTRYSSLVRLPYYDSVRFAIIDLM
HNLFLGTAKKMISVWKDEKFLN
Run BLAST on NCBI

transcript from alignment at sc0002356:15081..15925-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040233 ID=TCONS_00040233|Name=TCONS_00040233|organism=Clytia hemisphaerica|type=transcript|length=845bp|location=Sequence derived from alignment at sc0002356:15081..15925- (Clytia hemisphaerica)
GAAAAAGGAACCGCCCACCAATACGTTTATAGAACCTCTTCTCGAGGATC
TCTTATGTTCGTGGAATGGAGAGATGCCTATGAATACATACTCCTCCCCA
ATACTTGAAGTACCAGTGAAAGTCATGCTCCTCCTTGTTGGTTGTGATAT
AGCTGCATGTAGGAAACTATGTGGGTTTTTAGGTAAGTTATAAAATATGA
TAATGTGATTGGACTGCCCCTTTCTAACAAAATCTACGACACATTCAACG
ATTATTCTGAAAAGTTGATGGTTTAAAGTTTAACTGGTGTAACAAAAAGA
AATTTGTAGACTTTATTATCAGAAATCGTGACAGATGAACCTACAGATTT
CGTTTTCCCATCTTTTCTGTAGATTGTAGTATAGTAGATATATACCGGGT
GACCCACGAAAAAGTTCAGACGTTTCCCGACGTTTCGAGACCGAACAAAT
GTCCTAAAGTGCTTGGAGTTTTGATATTTAAAAAGTAGATATCCTAACAN
TGCTTTCAGGACACGCAGCGACGATGGGTTGCTCACGTTGTTGTAAAAAG
TTTCTCGGAAGAGTCGGTCAGAAAGATGGAAAAGACTGCTCCGGATTTGA
TACAGAGAATTGGACCGCACGAACAGGGGAGACACACCGCCAGCAGATGA
TTGAAATCATGGGTAAAACTACCAAAACCGAAAGAGAAGAGTTAGAGAGC
AAATATGGAACTCGATACAGTTCGTTGGTTCGGCTTCCATACTATGATTC
CGTACGTTTTGCTATCATTGATCTGATGCACAATCTTTTCCTCGGAACAG
CCAAAAAGATGATCAGCGTGTGGAAAGATGAAAAGTTTTTAAATA

Coding sequence (CDS) from alignment at sc0002356:15081..15925-

>TCONS_00040233 ID=TCONS_00040233|Name=TCONS_00040233|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at sc0002356:15081..15925- (Clytia hemisphaerica)
GACACGCAGCGACGATGGGTTGCTCACGTTGTTGTAAAAAGTTTCTCGGA
AGAGTCGGTCAGAAAGATGGAAAAGACTGCTCCGGATTTGATACAGAGAA
TTGGACCGCACGAACAGGGGAGACACACCGCCAGCAGATGATTGAAATCA
TGGGTAAAACTACCAAAACCGAAAGAGAAGAGTTAGAGAGCAAATATGGA
ACTCGATACAGTTCGTTGGTTCGGCTTCCATACTATGATTCCGTACGTTT
TGCTATCATTGATCTGATGCACAATCTTTTCCTCGGAACAGCCAAAAAGA
TGATCAGCGTGTGGAAAGATGAAAAGTTTTTAAATAAAAAGGAACCGCCC
ACCAATACGTTTATAGAACCTCTTCTCGAGGATCTCTTATGTTCGTGGAA
TGGAGAGATGCCTATGAATACATACTCCTCCCCAATACTTGAAGTACCAG
TGAAAGTCATGCTCCTCCTTGTTGGTTGTGATATAGCTGCATGTAGGAAA
CTATGTGGGTTTTTAGGACACGCAGCGACGATGGGTTGCTCACGTTGTTG
TAAAAAGTTTCTCGGAAGAGTCGGTCAGAAAGATGGAAAAGACTGCTCCG
GATTTGATACAGAGAATTGGACCGCACGAACAGGGGAGACACACCGCCAG
CAGATGATTGAAATCATGGGTAAAACTACCAAAACCGAAAGAGAAGAGTT
AGAGAGCAAATATGGAACTCGATACAGTTCGTTGGTTCGGCTTCCATACT
ATGATTCCGTACGTTTTGCTATCATTGATCTGATGCACAATCTTTTCCTC
GGAACAGCCAAAAAGATGATCAGCGTGTGGAAAGATGAAAAGTTTTTAAA
TAAAAAGGAACCGCCCACCAATACGTTTATAGAACCTCTTCTCGAGGATC
TCTTATGTTCGTGGAATGGAGAGATGCCTATGAATACATACTCCTCCCCA
ATACTTGAAGTACCAGTGAAAGTCATGCTCCTCCTTGTTGGTTGTGATAT
AGCTGCATGTAGGAAACTATGTGGGTTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024412XLOC_024412Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040233-proteinTCONS_00040233-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040233-exon-sc0002356-1575043694:15744..15925TCONS_00040233-exon-sc0002356-1575043694:15744..15925Clytia hemisphaericaexon
TCONS_00040233-exon-sc0002356-1575043694:15081..15416TCONS_00040233-exon-sc0002356-1575043694:15081..15416Clytia hemisphaericaexon
TCONS_00040233-exon-sc0002356-1510915933:15744..15925TCONS_00040233-exon-sc0002356-1510915933:15744..15925Clytia hemisphaericaexon
TCONS_00040233-exon-sc0002356-1510915933:15081..15416TCONS_00040233-exon-sc0002356-1510915933:15081..15416Clytia hemisphaericaexon
TCONS_00040233-exon-sc0002356-1491911889:15744..15925TCONS_00040233-exon-sc0002356-1491911889:15744..15925Clytia hemisphaericaexon
TCONS_00040233-exon-sc0002356-1491911889:15081..15416TCONS_00040233-exon-sc0002356-1491911889:15081..15416Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002356supercontigsc0002356:15081..15925 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.147612	0	0	0	0.232645	0	0	0	0.260782	0.489754	0.344764	0.265029	0	0	0	0	0	0	0	0.330051	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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