TCONS_00040227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040227
Unique NameTCONS_00040227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040227 ID=TCONS_00040227|Name=TCONS_00040227|organism=Clytia hemisphaerica|type=transcript|length=417bp
gaaTAAAGGTATTTCTAGTAACGTGTTACATCCTTGAGTATAAACAAATA
TGGCTTCTTCCTACCCCAAAGAATATGGGTTTGATgttaaatttattgaa
aaactggATAAGGACAATATAAAGTGTGCCATATGTTTTATGGTTTTACG
AGAACCGTTGCAAGGGTCAAGATGTGGTCATAGGTATTGCAAGAAATGCA
TTGAAGAATTCCATGAAAAGAACCCAAAGAAATGTCCGCAAGATTGGCAG
GACAATGAGTGGTTTAAAGACTTGGGAAAGGAAAGAGAGATTCTTGATTT
GAAGATTCGATGTAAAAATCATCGCGATGGATGCACCTGGCAGAACGAAC
TTCGAGATCAAAAGGAGCATTTGAAGACATGTGATTTCGAAACTATTCAA
TGTAATCTACGATGCGG
Run BLAST on NCBI

transcript from alignment at sc0002355:8960..10768+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040227 ID=TCONS_00040227|Name=TCONS_00040227|organism=Clytia hemisphaerica|type=transcript|length=1809bp|location=Sequence derived from alignment at sc0002355:8960..10768+ (Clytia hemisphaerica)
gaaTAAAGGTATTTCTAGTAACGTGTTACATCCTTGAGTATAAACAAATA
TGGCTTCTTCCTACCCCAAAGAATATGGGTTTGATgttaaatttattgaa
aaactggATAAGGACAATATAAAGTGTGCCATATGTTTTATGGTTTTACG
AGAACCGTTGCAAGGGTCAAGATGTGGTCATAGGTATTGCAAGAAATGCA
TTGAAGAATTCCATGAAAAGAAgtaagtttttttattcaaatacagggtg
tccctaataaaagtatcgagtttaaACATGCGATTGAGCCCtttttacta
ttcccctgttgcataGTTTTATATacgattctttacaaacatgttttaat
tgttgcgtttttctcatgatcgtaatttcgttgcatttgttaacaggcag
agtatgtttttattgttacgtgatgacaaagaaaaaagagggagagctta
aaatacaattttgtgaatacacacttaaaactttctactcaatcgcatgt
tcaaactcgatacttttattagggacaccctgtatttatCGTTTTACTTC
TCATTTATCTTTTTTTCGATCAAGCGTTTTATTGCTCAAACTCACTACCC
TATTGGGAAATTATTCCGTGTAGTCATATGGTTTCCTTTAAGAAACTTTT
ATCACTGATAGCAAATTTGCATCTTTATGAATGGCTATCGAAAGCATCCA
GCGAGGTTCCTGAGTTAAAAATTATGATCTGTTTTTCAAAGCTAAAGGAA
AGGGAAAACAGGTATTTTAGGGAAACAGGCTATCATCCGCTGCTTCTGAG
CTATGAGCTAAATCATTAACCACATACTAAAAATATACATTTTGGAAAAC
AAATACAATgtggagactttaaaaacaaatgagAGATGAAATACTTGACA
GGTTAGTAATAATAACTCGTTTTTTAGCCCAAAGAAATGTCCGCAAGATT
GGCAGGACAATGAGTGGTTTAAAGACTTGGGAAAGGAAAGAGAGATTCTT
GATTTGAAGATTCGATGTAAAAATCATCGCGATGGATGCACCTGGCAGAA
CGAACTTCGAGATCAAGAGGTTTGATNAAATCATCGCGATGGATGCACCT
GGCAGAACGAACTTCGAGATCAAAAGGTTTGATTCCTTTCCGTAATGTGA
CATTCACAACTGCAGTTTAGGCTGAAAACTTTTAAGGGGGGATAAGAAGC
TTAATTTAAAACTactgttttgaaaaatagattAGGATCTCGAAGTTGCG
GAAATGGTCCGTCCTTCTGAAATTTCTCccaaaaagctttttttctcact
ttttatgGCTCATTTGCTCTCAAATCAAGCACTACTATACACATTGGGAA
GCCTAAAAACCTAAAAACGTGCCCTTAACGGCTGCAGCTTTAGAAACTTA
CCCCCCTCATAGTTGTATACTGACtggaaatataattttaacTCCCGTTC
GATTaaatacatgcttttttatgagaaccaGTAGATTTTGGTTCAGGCTG
GGCTGTTGTTAGTTTTTCAAATTCTCAGGCTTATGTCCTGACGATGTTTT
TAATAGGCTTAGTTTCTtaacttaaaaacttaaaatgggtttttaatatt
ttaaaaatctattaaaatcaATACTTTCTTGGTAATGTCTGAACTCTGAG
CCTCatgattgttcttaatttgttcttagcttttggcccattttcagcct
catgttcttataaaaaagcgtgcattacgattttacaatattttgttctt
ttgtagGAGCATTTGAAGACATGTGATTTCGAAACTATTCAATGTAATCT
ACGATGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024408XLOC_024408Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040227-exon-sc0002355-1491911889:8960..9181TCONS_00040227-exon-sc0002355-1491911889:8960..9181Clytia hemisphaericaexon
TCONS_00040227-exon-sc0002355-1510915933:8960..9181TCONS_00040227-exon-sc0002355-1510915933:8960..9181Clytia hemisphaericaexon
TCONS_00040227-exon-sc0002355-1575043694:8960..9181TCONS_00040227-exon-sc0002355-1575043694:8960..9181Clytia hemisphaericaexon
TCONS_00040227-exon-sc0002355-1491911889:9887..10000TCONS_00040227-exon-sc0002355-1491911889:9887..10000Clytia hemisphaericaexon
TCONS_00040227-exon-sc0002355-1510915933:9887..10000TCONS_00040227-exon-sc0002355-1510915933:9887..10000Clytia hemisphaericaexon
TCONS_00040227-exon-sc0002355-1575043694:9887..10000TCONS_00040227-exon-sc0002355-1575043694:9887..10000Clytia hemisphaericaexon
TCONS_00040227-exon-sc0002355-1491911889:10058..10085TCONS_00040227-exon-sc0002355-1491911889:10058..10085Clytia hemisphaericaexon
TCONS_00040227-exon-sc0002355-1510915933:10058..10085TCONS_00040227-exon-sc0002355-1510915933:10058..10085Clytia hemisphaericaexon
TCONS_00040227-exon-sc0002355-1575043694:10058..10085TCONS_00040227-exon-sc0002355-1575043694:10058..10085Clytia hemisphaericaexon
TCONS_00040227-exon-sc0002355-1491911889:10716..10768TCONS_00040227-exon-sc0002355-1491911889:10716..10768Clytia hemisphaericaexon
TCONS_00040227-exon-sc0002355-1510915933:10716..10768TCONS_00040227-exon-sc0002355-1510915933:10716..10768Clytia hemisphaericaexon
TCONS_00040227-exon-sc0002355-1575043694:10716..10768TCONS_00040227-exon-sc0002355-1575043694:10716..10768Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002355supercontigsc0002355:8960..10768 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06434	3.83936	1.27597	0.902655	0	0.181763	0.296904	0	1.69367	1.58925	3.17553	1.20074	1.84974	0.357651	5.09727	2.81481	3.60315	1.76771	4.6981	6.54601	3.08559	1.16647	5.5715	6.22636	0	0	5.66242	5.35417	3.67174	3.0868
Blast
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BLAST of TCONS_00040227 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.477e-23
Identity = 48/116 (41.38%), Postives = 66/116 (56.90%), Query Frame = 2 
Query:   77 GFDVKFIEKLDKDNIKCAICFMVLREPLQGSRCGHRYCKKCIEEFHEKNPKKCPQDWQDNEW---FKDLGKEREILDLKIRCKNHRDGCTWQNELRDQKEHLKTCDFETIQCNLRC 415
            GFD KF+EK  K  + C +C   +REP+Q S CGHR+C  C++EF  +   KCP+D    ++   + D   E ++L L IRC +  +GC W   LR  + HL TC F  I C  RC
Sbjct:    3 GFDYKFLEK-PKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRC 117
The following BLAST results are available for this feature:
BLAST of TCONS_00040227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF45.477e-2341.38TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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