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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040225 ID=TCONS_00040225|Name=TCONS_00040225|organism=Clytia hemisphaerica|type=transcript|length=2820bp
CAAAGAAATGTCCGCAAGATTGGCAAGACAATGAGTGGTTTAAAGACTTG
GGAAAGGAAAGAGAGATTCTTGATTTAAAGGTTCGATGTAAAAATCATCG
CGATGGATGCACCTGGCAGAACGAACTTCGAGATCAAGAGGAGCATTTGA
AGACATGTGATTTCGTAACTATTCAATGTAATCTACGATGTGGAGAGCCC
GTGCTACGCAAAAATCTTAAAAATCACTTGGATAAAGACTGCCCATTGAT
CTCAACGTGCGAGTACAGCGATTTTGGGTGTCTTTTTAAGGGTACTAGAG
ACCAACTGTACAATCACATGTCAGAAGCGATCAATCAACATTTCTCCCTC
GAAATGAAGCAtgaaattcgaaacgtcaaaaaagaattcAGTGATAAATT
ACAAGAAAAAGATCTCAGAATTCAAGAGTTAACAAAGGAGTTTGATGCCC
AACTGAAGGAAAGAGATGACGAAATCAAACGACTGAGAAAAGATGTCGAG
GACGCTAAAAACGATCTCCAACGAGCTTCCAATGAAAACAATGAGAACCA
CAAAGCCATCGAAGAAACCAAAAAGGATTTCACCCGAGTTATCGATGAAA
CCAAAATTGAACAACAAAAAGCCAtcgaagaaacaaaaaaggatttCACC
CGAGTTATCGATGAAACCAAAATTGAACAACAAAAAGCCATCGAAGAGAC
CAAAAAGGACTTCATCGGAGTTGTCAATGAAACCAAAATTGAACAACAAA
AAGCCATCGAAGAGACCAAAAAGGACTTCATCGGAGTTGTCAATGAAACC
AAAATTGAACAACAAAAAGCTATGGAAGAGACCAAAAAGGATTTCACCCG
AGTTATCGATGAAACTAGAATTGAACAACAAAAAGCCATCGAAGAAACCA
AAAAGAACGTCACCCAAGTTGTCAATGAAACCAAAATTGAACAACAAAAA
GCCATCGAAGAAACCAAAAAGGATTTCACCCGAGTTATCGATGAAACCAA
AATTGAACAACAAAAAGCCATCGAAGAAACCAAAAAGGACTTAATCGGAA
TTGTCAATGAAACCAAAATTGAACAACAAAAAGCCAGCGAAGAAACCAAA
AAAGATGTCACCCGAGTTATCGAAGAAACTAAAATTGAACAACAAAAAGC
CATCGAAGAAACCAAAAAGGATTTCACCCGAGTTATCGATGAAACCAAAA
TTGAACAACAAAAAGCCATCGAAGAAACCAAAAAGGACTTAATCGGAATT
GTCAATGAAACCAAAATTGAACAACAAAAAGCCATCGAAGAAACCAAAAA
GGACTTAATCGGAATTGTCAATGAAACCAAAATTGAACAACAAAAAGCCA
GCGAAGAAACCAAAAAGGACTTAATCGGAATTGTCAATGAAACCAAAATT
GAACAACAAAAAGCCAGCGAAGAAACCAAAAAAGATGTCACCCAAGTTGT
CAATGAAACTAAAATTGAACAACAAACAGCCATCGAAGAAACCAAAAAAG
ATGTCACCCGAGTTGTCAATGAAACCAAGACTGAACAACAAAAAGCCATT
GAAGAAACCAAAAAGGATTTTACCCAAATTGTCAATGAAACCAAAAATGA
ACAACAGAAAGCTCTAAACAAATCAATGGAAATTATGTCTATGATGCTTT
ATATGAATAAAAACACTCATGAATTTATAAGCGGATCACTGAGGGAAAGG
AGTGATCATGTTCataatttaaacaaaaaactagCCGAAGAAAACAAACT
GACATTACAGATTTTAAGCTTACCACAATGCCCTTATTATTCTTTCACCA
TCGAGAATTTCAAAACCCAATTTcaggaaattaaaaaaacaaataaacat
aTCTTCTCTCCAAACTTCCTCACGGCAAATGGGTACTTAGGACGTCTAAA
TATCTGCTGTTTAAATGGGTTTTGCAGTGGTAAAGACAATCACGTGTCAG
TGTTCTTTCGGAGCCAAAAAGGACCAtatgataattttttgaaatggcCA
ATACCTTGGAAATCGCATTCAATGACACTTCTTGTTAACAACAAAGAAAT
CGGAAAGAAGTCAATGCAAAGTTCAAATAATGGAGGTAGATTGAAAGATC
ATTTCATACGACCGATTGGTGATGAAGGTAAAACTTTTGGATTTCAGATT
TTAGATCATAGATTGATAGAAAATCTTACTGATAAAGACGTAGTAGCTAT
CAAGTACGATATGGATTTTGAAACTCAAGAGCATTGAATCTGGAAGAACT
AGAAAGGAatctagattttgaaaaaagtagcgcgcgaaaacaaaaagaaa
taacTAGATTCAATACACCGTCCGATATATAACGCAAATTTTAAAGTTTC
CTTTTTTCTGGAACGAAAGGTCAAATTCACAATAATCAGCATTCACAATA
ATTTACATTGACGATATCGAAATCGGGaacattttttgtattttaaaaat
ttgaagtgTTTTCTATGCGCGCAAACATTTTGGGAAACCAGGTCATAATA
CAGGGTTTCTGAATAAAGAAAATGCCACTCAGCGATTGAACAATCTGGTT
AATAATGCACTTTTATCAAATACAAAGAATGATCAAGTGAAAGTTGCCAG
TTTCTAATAATTCTTGCTTGTTATTGACTTGATTGTTGAAACACGCTAAA
TAGGTacaattttagtattttttgtATAGTCGACTTTAAATTTTTAGTCT
TTAAATTTTCTAGTCTTAACATTTTGTTAATCTCCCAACAGATTCTGATT
GTTTCGTGCAAGCACGCATACACTCTAAATGCCATGACTATCCTTataag
agaatctgcccaggAGCGAG Run BLAST on NCBI transcript from alignment at sc0002355:1126..5623+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040225 ID=TCONS_00040225|Name=TCONS_00040225|organism=Clytia hemisphaerica|type=transcript|length=4498bp|location=Sequence derived from alignment at sc0002355:1126..5623+ (Clytia hemisphaerica)
CAAAGAAATGTCCGCAAGATTGGCAAGACAATGAGTGGTTTAAAGACTTG
GGAAAGGAAAGAGAGATTCTTGATTTAAAGGTTCGATGTAAAAATCATCG
CGATGGATGCACCTGGCAGAACGAACTTCGAGATCAAGAGGTTTGATTCC
TTTCCGTAATGTGACATTCACAACTGCAGTTTAGGttgaaaaactaaaaa
gggGGGAGGGGGGACTTGATTTAAAACtactgttttgaaaaaaagattag
gGTCTCGAAATTGCAGAAATGGTCAAACCTTCAAAGATTTCTCCCAAAAA
GCCTTTTTTCTCACTTTTAACATCCTTACGGCCTTACGGCACATTCTCTC
TCAAATTAAGCCCTACTGTGGGCCTATTGTACACTTTGGAAAGCCTAAAA
ACGTGCCCTTAAAGAGCTGCAGTTTTAGGAACTTACTCCCCCTCCGTAGT
TGTACGTTGTACACTGActggaaaaataatttatctcCCGTTCGATTTAA
TACAtgctttctttataagaaccagtagatTTTGGCAcagactgttctta
attttttgaaatttcaggctTAATGTTCTTattaggatgttcttaatatg
CTTAGTTTCTTTTCTgttaaaatcaattaaaatcaattaaaatcaATACT
GTCTTAGTAATTTCTGAATTCTGAgcctcagattgttcttaatttgttct
tagctTTTGGCCCATTTTCaacctcatgttcttatataaattgttcttat
aaaaaaagcgagCACTGTGATTTTacaatattttgttcttttataGGAGC
ATTTGAAGACATGTGATTTCGTAACTATTCAATGTAATCTACGATGTGGA
GAGCCCGTGCTACGCAAAAATGTAAGAAAGAGAACCATTATCATGTCTTC
AGAGACAGAATTCATCTTTttcttatattatattatattagcCAGTACCT
TACCATTATTTTTTACTAAGAACGCAGTAAAAACGCAGTTCTCGCCTAAC
CAGCTAGTATTATCTCGGCTCTAAGATGGCCAGATCTATTGATTAGTCAA
GGCTACTAGGCTCCTTAAAGTATTAATATTTGTCCTTATGAATGAATTTT
TCTACTTCACTGATTTTAAATGCAACTTTTACTTCTGTGGGCCAATAATT
TTCATTGACAAGAACTGTTAGAGCTTTCCTTTTAACACAAACGAAACTTA
TCTACTGATTCTACTGATTATCAGGTACAGCCCTTAGTTGTGTGCGTTAA
TCAATTTCATTGACATTGGACCCAATAAACTGTGAAGAGAAGAACTTTAA
AAGGATATAAATTTTGATTATTATATTTAAATTTTAGCTTAAAAATCACT
TGGATAAAGACTGCCCATTGATCTCAACGTGCGAGTACAGCGATTTTGGG
TGTCTTTTTAAGgtaattttctgaaagtaaATATTTGAGGTGAGacctta
ctcttgtctcccgaatagacgtggGTGGAGTCCGAATAAACAGGGGGata
ggaaaaattttttaaattctaataagcgggggggggatggaataagaggg
cgGGAGGgcggtaatttgaagacagaatttttttttaactgatatcaatt
tcaacaaaaaaaaagactttaacaAATGGACACgcaaaataagaaccaat
actaacaaaaaggaaaattttaccaAGTTTAAGGTTTATCTACACTGTaa
tgaaatattgaattattcgaaatTGATTAGCgaggggggtcttaataaga
gcggaaGGGGGATATATCTTTTTTTCNGTAGAAGGGGCCAAAAAAATCCT
TAAACTATTAGTCGAACAATGGAGATTATTTTTGTATATTAAATTATGTG
TTATCTTaaagaagaacaattttttcaaatgcgTTTTGGTTTCTGTAAAA
TCATCAAATCAACCAGTTCGACCAAATAAATGTTGATGTATTAACTGTTT
ATCGTTTCGACTTTTCAGGGTACTAGAGACCAACTGTACAATCACATGTC
AGAAGCGATCAATCAACATTTCTCCCTCGAAATGAAGCAtgaaattcgaa
acgtcaaaaaagaattcAGTGATAAATTACAAGAAAAAGATCTCAGAATT
CAAGAGTTAACAAAGGAGTTTGATGCCCAACTGAAGGAAAGAGATGACGA
AATCAAACGACTGAGAAAAGATGTCGAGGACGCTAAAAACGATCTCCAAC
GAGCTTCCAATGAAAACAATGAGAACCACAAAGCCATCGAAGAAACCAAA
AAGGATTTCACCCGAGTTATCGATGAAACCAAAATTGAACAACAAAAAGC
CAtcgaagaaacaaaaaaggatttCACCCGAGTTATCGATGAAACCAAAA
TTGAACAACAAAAAGCCATCGAAGAGACCAAAAAGGACTTCATCGGAGTT
GTCAATGAAACCAAAATTGAACAACAAAAAGCCATCGAAGAGACCAAAAA
GGACTTCATCGGAGTTGTCAATGAAACCAAAATTGAACAACAAAAAGCTA
TGGAAGAGACCAAAAAGGATTTCACCCGAGTTATCGATGAAACTAGAATT
GAACAACAAAAAGCCATCGAAGAAACCAAAAAGAACGTCACCCAAGTTGT
CAATGAAACCAAAATTGAACAACAAAAAGCCATCGAAGAAACCAAAAAGG
ATTTCACCCGAGTTATCGATGAAACCAAAATTGAACAACAAAAAGCCATC
GAAGAAACCAAAAAGGACTTAATCGGAATTGTCAATGAAACCAAAATTGA
ACAACAAAAAGCCAGCGAAGAAACCAAAAAAGATGTCACCCGAGTTATCG
AAGAAACTAAAATTGAACAACAAAAAGCCATCGAAGAAACCAAAAAGGAT
TTCACCCGAGTTATCGATGAAACCAAAATTGAACAACAAAAAGCCATCGA
AGAAACCAAAAAGGACTTAATCGGAATTGTCAATGAAACCAAAATTGAAC
AACAAAAAGCCATCGAAGAAACCAAAAAGGACTTAATCGGAATTGTCAAT
GAAACCAAAATTGAACAACAAAAAGCCAGCGAAGAAACCAAAAAGGACTT
AATCGGAATTGTCAATGAAACCAAAATTGAACAACAAAAAGCCAGCGAAG
AAACCAAAAAAGATGTCACCCAAGTTGTCAATGAAACTAAAATTGAACAA
CAAACAGCCATCGAAGAAACCAAAAAAGATGTCACCCGAGTTGTCAATGA
AACCAAGACTGAACAACAAAAAGCCATTGAAGAAACCAAAAAGGATTTTA
CCCAAATTGTCAATGAAACCAAAAATGAACAACAGAAAGCTCTAAACAAA
TCAATGGAAATTATGTCTATGATGCTTTATATGAATAAAAACACTCATGA
ATTTATAAGCGGATCACTGAGGGAAAGGAGTGATCATGTTCataatttaa
acaaaaaactagCCGAAGAAAACAAACTGACATTACAGATTTTAAGCTTA
CCACAATGCCCTTATTATTCTTTCACCATCGAGAATTTCAAAACCCAATT
TcaggaaattaaaaaaacaaataaacataTCTTCTCTCCAAACTTCCTCA
CGGCAAATGGGTACTTAGGACGTCTAAATATCTGCTGTTTAAATGGGTTT
TGCAGTGGTAAAGACAATCACGTGTCAGTGTTCTTTCGGAGCCAAAAAGG
ACCAtatgataattttttgaaatggcCAATACCTTGGAAATCGCATTCAA
TGACACTTCTTGTTAACAACAAAGAAATCGGAAAGAAGTCAATGCAAAGT
TCAAATAATGGAGGTAGATTGAAAGATCATTTCATACGACCGATTGGTGA
TGAAGGTAAAACTTTTGGATTTCAGATTTTAGATCATAGATTGATAGAAA
ATCTTACTGATAAAGACGTAGTAGCTATCAAGTACGATATGGATTTTGAA
ACTCAAGAGCATTGAATCTGGAAGAACTAGAAAGGAatctagattttgaa
aaaagtagcgcgcgaaaacaaaaagaaataacTAGATTCAATACACCGTC
CGATATATAACGCAAATTTTAAAGTTTCCTTTTTTCTGGAACGAAAGGTC
AAATTCACAATAATCAGCATTCACAATAATTTACATTGACGATATCGAAA
TCGGGaacattttttgtattttaaaaatttgaagtgTTTTCTATGCGCGC
AAACATTTTGGGAAACCAGGTCATAATACAGGGTTTCTGAATAAAGAAAA
TGCCACTCAGCGATTGAACAATCTGGTTAATAATGCACTTTTATCAAATA
CAAAGAATGATCAAGTGAAAGTTGCCAGTTTCTAATAATTCTTGCTTGTT
ATTGACTTGATTGTTGAAACACGCTAAATAGGTacaattttagtattttt
tgtATAGTCGACTTTAAATTTTTAGTCTTTAAATTTTCTAGTCTTAACAT
TTTGTTAATCTCCCAACAGATTCTGATTGTTTCGTGCAAGCACGCATACA
CTCTAAATGCCATGACTATCCTTataagagaatctgcccaggAGCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040225-exon-sc0002355-1491911889:1126..1265 | TCONS_00040225-exon-sc0002355-1491911889:1126..1265 | Clytia hemisphaerica | exon |
| TCONS_00040225-exon-sc0002355-1510915933:1126..1265 | TCONS_00040225-exon-sc0002355-1510915933:1126..1265 | Clytia hemisphaerica | exon |
| TCONS_00040225-exon-sc0002355-1575043694:1126..1265 | TCONS_00040225-exon-sc0002355-1575043694:1126..1265 | Clytia hemisphaerica | exon |
| TCONS_00040225-exon-sc0002355-1491911889:1922..1996 | TCONS_00040225-exon-sc0002355-1491911889:1922..1996 | Clytia hemisphaerica | exon |
| TCONS_00040225-exon-sc0002355-1510915933:1922..1996 | TCONS_00040225-exon-sc0002355-1510915933:1922..1996 | Clytia hemisphaerica | exon |
| TCONS_00040225-exon-sc0002355-1575043694:1922..1996 | TCONS_00040225-exon-sc0002355-1575043694:1922..1996 | Clytia hemisphaerica | exon |
| TCONS_00040225-exon-sc0002355-1491911889:2463..2537 | TCONS_00040225-exon-sc0002355-1491911889:2463..2537 | Clytia hemisphaerica | exon |
| TCONS_00040225-exon-sc0002355-1510915933:2463..2537 | TCONS_00040225-exon-sc0002355-1510915933:2463..2537 | Clytia hemisphaerica | exon |
| TCONS_00040225-exon-sc0002355-1575043694:2463..2537 | TCONS_00040225-exon-sc0002355-1575043694:2463..2537 | Clytia hemisphaerica | exon |
| TCONS_00040225-exon-sc0002355-1491911889:3094..5623 | TCONS_00040225-exon-sc0002355-1491911889:3094..5623 | Clytia hemisphaerica | exon |
| TCONS_00040225-exon-sc0002355-1510915933:3094..5623 | TCONS_00040225-exon-sc0002355-1510915933:3094..5623 | Clytia hemisphaerica | exon |
| TCONS_00040225-exon-sc0002355-1575043694:3094..5623 | TCONS_00040225-exon-sc0002355-1575043694:3094..5623 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002355 | supercontig | sc0002355:1126..5623 + |
Blast
The following BLAST results are available for this feature:
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