|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040219 ID=TCONS_00040219|Name=TCONS_00040219|organism=Clytia hemisphaerica|type=transcript|length=725bp
gggactggTTGCGCTCTAGTAATGACTTCCGGTTGGCTAGACACAAAAAC
TTTCGAAACTTTGGACATATAGTAGGTCGTCTAGcacgcagtggtcctga
ttacccattataCTTTGCGACTGCGGCCTATGCAGAAGGATGAGTCACTC
TTTATGGAAAAAGTCGGTTATTCATCTATGTTCAGTTGAGTTGCATTAAC
AATGGGTTGATTATACTTTGATTTTGTTAAAATCTCCATAATTCCGTTAT
TCCTACCAGAAAACCTTGTGCGTTGTTGCCTCAGCTGATGGTTTTGTTGA
AAGAAATGTATCGACGGCATCTGATATTTCGAGCATATGTGGATGGTCTT
TGGCAAGACGCTCTAGATATTCTCTGTGATGCCACTGATCTTGATCTGCT
TTTCATTGATTTCATAAGGATTTATTCGCGATTAAAAAATCTGTCCGGAT
AATTCTCGAGTTGATCTCCTAGAAGAATAGTTACCTTTGAGGAACACTTT
TGTAGACTTCCGGTTGGTTCCCTTCCATCTCAACAATAGACTGTAGTTAA
AGGCCAAACGGTATAACATAATTATTATGCCCAGAATCATTATGCCCAGT
TGCTGCAAATAGGTCAAGCAAGTATGACGTTTGTTGAGGCGAAGAGAAGA
TTCCAATTAATGGTTCGTTCAGCTCTGATGAAGTCTTGAACGATGCCAAC
GTAGCAGTAGTAGTCTTCCCTGAAt Run BLAST on NCBI transcript from alignment at sc0002353:16..877+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040219 ID=TCONS_00040219|Name=TCONS_00040219|organism=Clytia hemisphaerica|type=transcript|length=862bp|location=Sequence derived from alignment at sc0002353:16..877+ (Clytia hemisphaerica)
gggactggTTGCGCTCTAGTAATGACTTCCGGTTGGCTAGACACAAAAAC
TTTCGAAACTTTGGACATATAGTAggtcgtcattagcgcgcagcggtcct
gattacccattataCTTTGCGACTGCGGCCTATGCAGAAGGACGAGTCAC
TCTTTATTGAAAAAGTCGGTTATTTNGACACAAAAACCTTCGAAACTTTG
GACATATAGTAGGTCGTCTAGcacgcagtggtcctgattacccattataC
TTTGCGACTGCGGCCTATGCAGAAGGATGAGTCACTCTTTATGGAAAAAG
TCGGTTATTCATCTATGTTCAGTTGAGTTGCATTAACAATGGGTTGATTA
TACTTTGATTTTGTTAAAATCTCCATAATTCCGTTATTCCTACCAGAAAA
CCTTGTGCGTTGTTGCCTCAGCTGATGGTTTTGTTGAAAGAAATGTATCG
ACGGCATCTGATATTTCGAGCATATGTGGATGGTCTTTGGCAAGACGCTC
TAGATATTCTCTGTGATGCCACTGATCTTGATCTGCTTTTCATTGATTTC
ATAAGGATTTATTCGCGATTAAAAAATCTGTCCGGATAATTCTCGAGTTG
ATCTCCTAGAAGAATAGTTACCTTTGAGGAACACTTTTGTAGACTTCCGG
TTGGTTCCCTTCCATCTCAACAATAGACTGTAGTTAAAGGCCAAACGGTA
TAACATAATTATTATGCCCAGAATCATTATGCCCAGTTGCTGCAAATAGG
TCAAGCAAGTATGACGTTTGTTGAGGCGAAGAGAAGATTCCAATTAATGG
TTCGTTCAGCTCTGATGAAGTCTTGAACGATGCCAACGTAGCAGTAGTAG
TCTTCCCTGAAt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040219-exon-sc0002353-1491911889:16..81 | TCONS_00040219-exon-sc0002353-1491911889:16..81 | Clytia hemisphaerica | exon |
| TCONS_00040219-exon-sc0002353-1510915933:16..81 | TCONS_00040219-exon-sc0002353-1510915933:16..81 | Clytia hemisphaerica | exon |
| TCONS_00040219-exon-sc0002353-1575043694:16..81 | TCONS_00040219-exon-sc0002353-1575043694:16..81 | Clytia hemisphaerica | exon |
| TCONS_00040219-exon-sc0002353-1491911889:219..877 | TCONS_00040219-exon-sc0002353-1491911889:219..877 | Clytia hemisphaerica | exon |
| TCONS_00040219-exon-sc0002353-1510915933:219..877 | TCONS_00040219-exon-sc0002353-1510915933:219..877 | Clytia hemisphaerica | exon |
| TCONS_00040219-exon-sc0002353-1575043694:219..877 | TCONS_00040219-exon-sc0002353-1575043694:219..877 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002353 | supercontig | sc0002353:16..877 + |
Blast
The following BLAST results are available for this feature:
|
