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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040217 ID=TCONS_00040217|Name=TCONS_00040217|organism=Clytia hemisphaerica|type=transcript|length=785bp
ctaggacaaaaaacaacaataataGAGAATAAATTCCGTCAACGGAGTTC
ACAAAGTAATAAAAACTAAGATGCATGATGTATTGGATTTCTTCACCAGA
GAAATTGAATTGCCAAAGGTTGAAGACAACGATAAAAATGAAGAGCTTGA
AGACTCAGTCAGTGTTTCTCTCTTCAGCTTACCACAcccaattttttcag
aaataatTCAGATTCCTAACACCCAACCTGACCCATCAAAACTTATTTTC
AAGCATCACTTTGACGATTCTAAATGCTTATTGGATGTTAAAAACCACAT
TACCAAAGGCTTTGGCATTCCTGGTGactctcaaattcttttgagaTACT
TTCCAGAAACCAAATCATACAAAGCTTCACCTTTAccagaaaatgtcaaa
atctcGAGTCTCTTAATGAACGCAAAAGGAGAATCAATTGGAAATAAATT
GATACTATTATTGGCAGTTTGCCAGCAAGGTGAAATTGAATCGAAACTTA
AGGAACAGTTGTTGGAATACAATATTCCAGAATTAAAAGGGTTTACTATT
AAAGGGTACGAATCAAGACATATTATAATGATGGCAAACTCTTTTGAGTT
TAATCGTATCGTAGAAAATACATCCAGGATCACTGGATTGCGTAACGAAG
ACCAAATGTATCATGATGATAATGGCGTAACTGGTGATCCTGTTAATATC
CCAGAAAATGATTTATTCAAAGATATTTATTTATCTACAAAGAGTCTTGA
TCAGGAGCAACGTTGTTTTGAATGGGGAGTCAANN Run BLAST on NCBI protein sequence of TCONS_00040217-protein >TCONS_00040217-protein ID=TCONS_00040217-protein|Name=TCONS_00040217-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MHDVLDFFTREIELPKVEDNDKNEELEDSVSVSLFSLPHPIFSEIIQIPN
TQPDPSKLIFKHHFDDSKCLLDVKNHITKGFGIPGDSQILLRYFPETKSY
KASPLPENVKISSLLMNAKGESIGNKLILLLAVCQQGEIESKLKEQLLEY
NIPELKGFTIKGYESRHIIMMANSFEFNRIVENTSRITGLRNEDQMYHDD
NGVTGDPVNIPENDLFKDIYLSTKSLDQEQRCFEWGVX Run BLAST on NCBI transcript from alignment at sc0002351:26405..27189 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040217 ID=TCONS_00040217|Name=TCONS_00040217|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at sc0002351:26405..27189 (Clytia hemisphaerica)
NNTTGACTCCCCATTCAAAACAACGTTGCTCCTGATCAAGACTCTTTGTA
GATAAATAAATATCTTTGAATAAATCATTTTCTGGGATATTAACAGGATC
ACCAGTTACGCCATTATCATCATGATACATTTGGTCTTCGTTACGCAATC
CAGTGATCCTGGATGTATTTTCTACGATACGATTAAACTCAAAAGAGTTT
GCCATCATTATAATATGTCTTGATTCGTACCCTTTAATAGTAAACCCTTT
TAATTCTGGAATATTGTATTCCAACAACTGTTCCTTAAGTTTCGATTCAA
TTTCACCTTGCTGGCAAACTGCCAATAATAGTATCAATTTATTTCCAATT
GATTCTCCTTTTGCGTTCATTAAGAGACTCgagattttgacattttctgg
TAAAGGTGAAGCTTTGTATGATTTGGTTTCTGGAAAGTAtctcaaaagaa
tttgagagtCACCAGGAATGCCAAAGCCTTTGGTAATGTGGTTTTTAACA
TCCAATAAGCATTTAGAATCGTCAAAGTGATGCTTGAAAATAAGTTTTGA
TGGGTCAGGTTGGGTGTTAGGAATCTGAattatttctgaaaaaattgggT
GTGGTAAGCTGAAGAGAGAAACACTGACTGAGTCTTCAAGCTCTTCATTT
TTATCGTTGTCTTCAACCTTTGGCAATTCAATTTCTCTGGTGAAGAAATC
CAATACATCATGCATCTTAGTTTTTATTACTTTGTGAACTCCGTTGACGG
AATTTATTCTCtattattgttgttttttgtcctag Coding sequence (CDS) from alignment at sc0002351:26405..27189 >TCONS_00040217 ID=TCONS_00040217|Name=TCONS_00040217|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0002351:26405..27189 (Clytia hemisphaerica)
NTTGACTCCCCATTCAAAACAACGTTGCTCCTGATCAAGACTCTTTGTAG
ATAAATAAATATCTTTGAATAAATCATTTTCTGGGATATTAACAGGATCA
CCAGTTACGCCATTATCATCATGATACATTTGGTCTTCGTTACGCAATCC
AGTGATCCTGGATGTATTTTCTACGATACGATTAAACTCAAAAGAGTTTG
CCATCATTATAATATGTCTTGATTCGTACCCTTTAATAGTAAACCCTTTT
AATTCTGGAATATTGTATTCCAACAACTGTTCCTTAAGTTTCGATTCAAT
TTCACCTTGCTGGCAAACTGCCAATAATAGTATCAATTTATTTCCAATTG
ATTCTCCTTTTGCGTTCATTAAGAGACTCgagattttgacattttctggT
AAAGGTGAAGCTTTGTATGATTTGGTTTCTGGAAAGTAtctcaaaagaat
ttgagagtCACCAGGAATGCCAAAGCCTTTGGTAATGTGGTTTTTAACAT
CCAATAAGCATTTAGAATCGTCAAAGTGATGCTTGAAAATAAGTTTTGAT
GGGTCAGGTTGGGTGTTAGGAATCTGAattatttctgaaaaaattgggTG
TGGTAAGCTGAAGAGAGAAACACTGACTGAGTCTTCAAGCTCTTCATTTT
TATCGTTGTCTTCAACCTTTGGCAATTCAATTTCTCTGGTGAAGAAATCC
AATACATCATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040217-exon-sc0002351-1491911889:26405..27189 | TCONS_00040217-exon-sc0002351-1491911889:26405..27189 | Clytia hemisphaerica | exon |
| TCONS_00040217-exon-sc0002351-1510915933:26405..27189 | TCONS_00040217-exon-sc0002351-1510915933:26405..27189 | Clytia hemisphaerica | exon |
| TCONS_00040217-exon-sc0002351-1575043694:26405..27189 | TCONS_00040217-exon-sc0002351-1575043694:26405..27189 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002351 | supercontig | sc0002351:26405..27189 . |
Blast
The following BLAST results are available for this feature:
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