TCONS_00040205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040205
Unique NameTCONS_00040205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040205 ID=TCONS_00040205|Name=TCONS_00040205|organism=Clytia hemisphaerica|type=transcript|length=2365bp
cccgacttttcaagggccgtaggcgacgcaccggactctgcaagGCTTTG
cctattgcaagaccatatctcctggcaaacagattccatggtcgacgaat
agttaacaagaaaagagtTTAAGGTGCCTTTAAAgggataaaaaatgaaa
ctttattAATCCAGGTATAGCAGATGAAAAATTCAGGTCAAAGTCATATA
CAGATCCTTTCCAAGATTGTAATATAATCCGAATTTTAGAATTTCCACTA
AGGAGTCCATATTGAGGATCAGGATTGAGTCTAGAATAAAATGACCATGG
TATGTAAAGGAAACCTGTCATTTGCCATGTGTCAAGTGGTCAATCAtaat
aaaagaattttgttCAACTATGGGTCTCCTTCTAGTCTGCTCTaaatcat
tttagtttaatggcTAGCTTGTGTAAACACAAATTTTCCAAGTTCAAATT
TCTCACTTTAATTTGGGTTAACCATAGTGAAAAGATTTCTAGAATTTGGA
TTGAGCTGGACTGAGTGAACTTCTGAATCAGTAGAATGTGAACTTGTTGT
TAGGGTTGATGTATACAGCAAATGTGTAACTGTGAAAATTGGCAGACTTT
GGGCTAATCAGAAGAGTGTAAATGGTCTGCATGGAGAATGGAGCTGGGCg
tgaattttgacATTTTTCCCTCTCTCAAAGAATATCAAACCACAAATTCT
CAAATTTGTGCATTTTTGTGTTGCCAAAAATCAAAGTAGCTGAACTGACT
AAATATTTTATATACTTCCAAATTCATTGGAAGAGACTCTCGAGAGAGAT
ATCGATAACTTTTTAACACTTTTACCATCCTCAATTTCCCTCAATTTATT
TTCACAATAATTTGgaataaagaaataaataataaaaaattcagACTCTG
ATAGTGCAGCTTATTACAAGGATAATTTTATCAGTTAATAAGTTGATATA
CTTTGAGCTAGATAGCGATTTTATGCGCATTGAAAAGATTATCGTGAGTG
GGATattatcaacaaaaaaatttcaaaatggagatgaaaaatgaaaaaga
aaaaaaccaaCTCCTGGTAGAATTGTGATATAATCACCATTTTTACAGGG
GATTCTTGAATCTTACAACATATCATTActgtgaaaaaaacttttcaaaa
atatttattcagtcaaaagatattgcACAAAGCTCATCACTGATTGACTC
tgaaaaaacaccaaaaaacagCGAAAGACAGCCTTTTTTACACTTAACTA
GCTGAAGACTTTGTgtcataattttttaattgaataagtatttttgaaat
atacttTAATATGACAATTATATGACATGTATTTTTAAGTGTAAATGATT
AATTTGATCAAGTAAAATGAGATCAGGAAAATACAAGTTAGGCGGTCCAA
TTGTAAGtaatttgtttgcttttttgataGAGAAGAAGTCAAGTGATTCT
CAGATTACAAGCTAAAGTTTCAAATCTAGAAATTCTTGCTCTGACAAACA
TTGATATTATAAATATTGGCGTTTATTGAATCAGATATCTTACCAACAAA
GCATACATAGTTTTTTGTAAAGAATTCTTTTTCAAGAGTCACAGGGCTCA
ATATCGAGAAATTTTTAAGAGTTTTTCAAGAATAACACTGAACCTCAAAT
TTTGGCCGAAGAGGGTTCTTTTCAGACAACTTCTATGTTATTGAATGGTT
GTGAAGAAGTAAATTGCACagggaaaaaatctaaatttttgagacGAATT
TTCGTGGCATATTCAAGTAAAAAGAGGTTTGAATTCTGGTCATTGCCGCG
TACTCTCGTGTAGATTCTACCACAAATggattaaagatttaaaaggACAC
CTCGGGCGCGCTCATAATATGACGTTggtatctcataaaaaattacCTCC
GTCTCAGCTCAGTAGTGTCGTACAGAAAAATAAGGCAAACCAGATGTATG
CATAGAAGACCAACCGTTTTCAAGCTGCTCACAAAGCCAATCATTGGGTC
CAGCCGTAACTGAGTTAGATATATTTGGAAAAGATGCTAGCGATAGCGAG
AAAGTGAATCAAAATCTCACAAGTGATGAAGAAAGCGATGGCGAAAGAAG
TGTTCTCGACTCTGATGTATCACTTTCTTCGCCTTTTTATCCTGGAATCA
TTAGTCCAAGTCCTAAAAAAGATCTGGATATCACACGAGTTCGAAGAGTC
ATACTACCGGAATTATGATAAAGAGTTTTATATACACAAACATTTTATAT
CTTTACGAAAAAGAAACAATTTCTGAAATAACACGCTGTTAGtctcttta
aaacttttgatcatggtgtaatttattttcataattgTGTACATCACGTC
GATCCATTTTGGGGG
Run BLAST on NCBI

transcript from alignment at sc0002351:604..4895+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040205 ID=TCONS_00040205|Name=TCONS_00040205|organism=Clytia hemisphaerica|type=transcript|length=4292bp|location=Sequence derived from alignment at sc0002351:604..4895+ (Clytia hemisphaerica)
cccgacttttcaagggccgtaggcgacgcaccggactctgcaagGCTTTG
cctattgcaagaccatatctcctggcaaacagattccatggtcgacgaat
agttaacaagaaaagagtTTAAGGTGCCTTTAAAgggataaaaaatgaaa
ctttattAATCCAGGTATAGCAGATGAAAAATTCAGGTCAAAGTCATATA
CAGATCCTTTCCAAGATTGTAATATAATCCGAATTTTAGAATTTCCACTA
AGGAGTCCATATTGAGGATCAGGATTGAGTCTAGAATAAAATGACCATGG
TATGTAAAGGAAACCTGTCATTTGCCATGTGTCAAGTGGTCAATCAtaat
aaaagaattttgttCAACTATGGGTCTCCTTCTAGTCTGCTCTaaatcat
tttagtttaatggcTAGCTTGTGTAAACACAAATTTTCCAAGTTCAAATT
TCTCACTTTAATTTGGGTTAACCATAGTGAAAAGATTTCTAGAATTTGGA
TTGAGCTGGACTGAGTGAACTTCTGAATCAGTAGAATGTGAACTTGTTGT
TAGGGTTGATGTATACAGCAAATGTGTAACTGTGAAAATTGGCAGACTTT
GGGCTAATCAGAAGAGTGTAAATGGTCTGCATGGAGAATGGAGCTGGGCg
tgaattttgacattttttcctCTCTCAAAGAATATCAAACCACAAATTCT
CAAATTTGTGCATTTTTGTGTTGCCAAAAATCAAAGTAGCTGAACTGACT
AATTATTTTATACNCATTTTTCCCTCTCTCAAAGAATATCAAACCACAAA
TTCTCAAATTTGTGCATTTTTGTGTTGCCAAAAATCAAAGTAGCTGAACT
GACTAAATATTTTATATACTTCCAAATTCATTGGAAGAGACTCTCGAGAG
AGATATCGATAACTTTTTAACACTTTTACCATCCTCAATTTCCCTCAATT
TATTTTCACAATAATTTGgaataaagaaataaataataaaaaattcagAC
TCTGATAGTGCAGCTTATTACAAGGATAATTTTATCAGTTAATAAGTTGA
TATACTTTGAGCTAGATAGCGATTTTATGCGCATTGAAAAGATTATCGTG
AGTGGGATattatcaacaaaaaaatttcaaaatggagatgaaaaatgaaa
aagaaaaaaaccaaCTCCTGGTAGAATTGTGATATAATCACCATTTTTAC
AGGGGATTCTTGAATCTTACAACATATCATTActgtgaaaaaaacttttc
aaaaatatttattcagtcaaaagatattgcACAAAGCTCATCACTGATTG
ACTCtgaaaaaacaccaaaaaacagCGAAAGACAGCCTTTTTTACACTTA
ACTAGCTGAAGACTTTGTgtcataattttttaattgaataagtatttttg
aaatatacttTAATATGACAATTATATGACATGTATTTTTAAGTGTAAAT
GATTAATTTGATCAAGTAAAATGAGATCAGGAAAATACAAGTTAGGCGGT
CCAATTGTAAGtaatttgtttgcttttttgataGAGAAGAAGTCAAGTGA
TTCTCAGATTACAAGCTAAAGTTTCAAATCTAGAAATTCTTGCTCTGACA
AACATTGATATTATAAATATTGGCGTTTATTGAATCAGATATCTTACCAA
CAAAGCATACATAGTTTTTTGTAAAGAATTCTTTTTCAAGAGTCACAGGG
CTCAATATCGAGAAATTTTTAAGAGTTTTTCAAGAATAACACTGAACCTC
AAATTTTGGCCGAAGAGGGTTCTTTTCAGACAACTTCTATGTTATTGAAT
GGTTGTGAAGAAGTAAATTGCACagggaaaaaatctaaatttttgagacG
AATTTTCGTGGCATATTCAAGTAAAATCATCTTTTAATATCTTCAAAACT
TAAAAGTCACTTAAGTTCgggaaaaattaagaattgcGACGCTCATTGTG
TATTATTTTCTGTATCTTTTTAGGTAAAAAGAGGTTTGAATTCTGGTCAT
TGCCGCGTACTCTCGTGTAGATTCTACCACAAATggattaaagatttaaa
aggACACCTCGGGCGCGCTCATAATATGACGTTggtatctcataaaaaat
tacCTCCGTCTCAGCTCAGTAGTGTCGTACAGAAAAATAAGGGTAAATAT
CATATGAAAAGTAGGAAAATTGAGCTATGTAGCCTAAAGGGGTGTATACA
CTATATGCAACCTCAAACGGATCTTACCCGACATTTAAAAAACTGTCACG
CTGGTATGACGAAGAGGGAATATTATGCTAAAAGGTACTATCAAATTAAG
TTTATGAACGTCTGACCATCTCGTTTCTTTTTAATCGGCCTATGAACCCT
ATGAAGGCAAAAGTGGGCGGGGTATGAGGTAAAAGGGGTGACCTGATCTT
TCATGGGGGCTGCAGGAttttaagatttatttttttaaactggTCACAAT
CCATTTTACCTTCAGTATTTAGATATTTGCCATTTGTATTTTTAATTCAT
TATAAGCCATAGTGTCTAGGTATTTAGTACCTCATAATGTATACATGTTT
TTTCTTTTATAAGCAtaacgtttataagcatatgcaggctcagtttttgg
tacctaaacaatggctctattgtttgagaacaatagaatgctaagcataa
tgcgagcctgatgtaggggcagtcacttgcttataaaaaaaaacatgtat
ttgaataaatgagaaagatttttaagcattcATTGAACTTTAATGTATGA
CAACAGCCTTTGATGGTTAAAGCCGAGAAAGTCTGGGGGGGGCTATCATG
AATCGAATTTTCTGGAGGGCGCTAAGTGAAAAGGGGGAGCTGAATTTTCT
GGGGAATTTGTTTATAACTCGTTTAAAATCTTTAAGCATCGTTATTCATT
TGTCTTGTTTAGCAAACCAGATGTATGCATAGAAGACCAACCGTTTTCAA
GCTGCTCACAAAGCCAATCATTGGGTCCAGCCGTAACTGAGTTAGATATA
TTTGGAAAAGGTATGACAATTCGATCTTTAATGATTGGCACAAAAACTTA
TGCTGAAATAAACTGGGCAGAACTCGTAGACTAGAAAAATAGTCGTTAAA
ATCAGGTCCCAATACGACAAAATTCAagctcaaaagaaaaagaattgtaT
ACCCTGGACTAGTCTCGTCTTCTTCTTAGTTTTTGGCTAAATTTCAGGCC
AAATTCTTatagaaattcaaattctcGTGTAAAACCGTGTATTGAAATAC
TTAAATCATTTCAGAGTGTAACACCGACATATCACTCTGAGGAATTCTTT
TGAAGCctgaaaaatcctatttttttcCAGAAATGTTTTTCCTTTATTGA
TTATAGATGCTAGCGATAGCGAGAAAGTGAATCAAAATCTCACAAGTGAT
GAAGAAAGCGATGGCGAAAGAAGTGTTCTCGACTCTGATGTATCACTTTC
TTCGCCTTTTTATCCTGGAATCATTAGTCCAAGTCCTAAAAAAGGTTTGT
TAAATATTCCGCTTCTGTATTCTTTCACTTCAACGTAGAATGCATTAGGC
GTGCAAGTTATCGCGAGCAGAAAGTTTTGCGAGGTCGAAATTTATgacat
ttacttttgcgaaaaaggccaatttttgaaaatcgcgaaagtttctgctc
gcgaaagtttgtataATTAAAGCTGATTAAAGTAAAACCTTTGGTTGCTT
TTCTCGAACATAAATGATAGATAGCATAAATAGGTCTCACTCTATTTTGA
TTTGCTTGATGTGATTAATGCCAATGATGTATCCTTTTCCTACCgatatt
ttaaaaacatacgTGTACgtacaaaaaaagtttcaaaatgatACATGTTA
GATTTAGATTTAATATTTAAACCATATCAATACTACAAGTTTGGTGTTAT
GTGTCGACACATAACATCAATGATGTAAAACAAAGtacttatttttttct
aaaatgcaGGCCTCCCTGTTATGTGATGTTATTAGACCCTGTTATTAGAC
CCTCCCCAACAACAACACTAAAAGAGTATCAAACGTACTCTCTTTTCCGT
TGTTTCAAGGAAGCTGACTTTTgtaatctttattttttcattcgaCAGAT
CTGGATATCACACGAGTTCGAAGAGTCATACTACCGGAATTATGATAAAG
AGTTTTATATACACAAACATTTTATATCTTTACGAAAAAGAAACAATTTC
TGAAATAACACGCTGTTAGtctctttaaaacttttgatcatggtgtaatt
tattttcataattgTGTACATCACGTCGATCCATTTTGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024395XLOC_024395Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040205-exon-sc0002351-1491911889:604..1264TCONS_00040205-exon-sc0002351-1491911889:604..1264Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1510915933:604..1264TCONS_00040205-exon-sc0002351-1510915933:604..1264Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1575043694:604..1264TCONS_00040205-exon-sc0002351-1575043694:604..1264Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1491911889:1369..2473TCONS_00040205-exon-sc0002351-1491911889:1369..2473Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1510915933:1369..2473TCONS_00040205-exon-sc0002351-1510915933:1369..2473Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1575043694:1369..2473TCONS_00040205-exon-sc0002351-1575043694:1369..2473Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1491911889:2577..2745TCONS_00040205-exon-sc0002351-1491911889:2577..2745Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1510915933:2577..2745TCONS_00040205-exon-sc0002351-1510915933:2577..2745Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1575043694:2577..2745TCONS_00040205-exon-sc0002351-1575043694:2577..2745Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1491911889:3516..3613TCONS_00040205-exon-sc0002351-1491911889:3516..3613Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1510915933:3516..3613TCONS_00040205-exon-sc0002351-1510915933:3516..3613Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1575043694:3516..3613TCONS_00040205-exon-sc0002351-1575043694:3516..3613Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1491911889:3960..4097TCONS_00040205-exon-sc0002351-1491911889:3960..4097Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1510915933:3960..4097TCONS_00040205-exon-sc0002351-1510915933:3960..4097Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1575043694:3960..4097TCONS_00040205-exon-sc0002351-1575043694:3960..4097Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1491911889:4702..4895TCONS_00040205-exon-sc0002351-1491911889:4702..4895Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1510915933:4702..4895TCONS_00040205-exon-sc0002351-1510915933:4702..4895Clytia hemisphaericaexon
TCONS_00040205-exon-sc0002351-1575043694:4702..4895TCONS_00040205-exon-sc0002351-1575043694:4702..4895Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002351supercontigsc0002351:604..4895 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.439392	0.654679	0.440862	0.365418	0.802196	0.830754	0.819265	0.515033	0.433188	0.681734	0.942616	0.71319	0.48623	0.649189	0.883937	1.02708	0.730366	0.663795	1.22663	0.746043	2.15842	2.2761	1.00138	0.978081	0	0.185898	1.98166	2.00837	2.52452	2.07109
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top