TCONS_00040203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040203
Unique NameTCONS_00040203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2163

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040203 ID=TCONS_00040203|Name=TCONS_00040203|organism=Clytia hemisphaerica|type=transcript|length=2163bp
GAggttatgagtacgaacggatgcgaaaatcaatttgtcccccgactttt
caagggccgtaggcgacgcaccggactctgcaagGCTTTGCCNAATAAGT
TTTTTCTCTTTATGCCTTTGCTGAggttatgagtacgaacggatgcgaaa
atcaatttgtcccccgacttttcaagggccgtaggcgacgcaccggactc
tgcaagGCTTTGcctattgcaagaccatatctcctggcaaacagattcca
tggtcgacgaatagttaacaagaaaagagtTTAAGGTGCCTTTAAAggga
taaaaaatgaaactttattAATCCAGGTATAGCAGATGAAAAATTCAGGT
CAAAGTCATATACAGATCCTTTCCAAGATTGTAATATAATCCGAATTTTA
GAATTTCCACTAAGGAGTCCATATTGAGGATCAGGATTGAGTCTAGAATA
AAATGACCATGGTATGTAAAGGAAACCTGTCATTTGCCATGTGTCAAGTG
GTCAATCAtaataaaagaattttgttCAACTATGGGTCTCCTTCTAGTCT
GCTCTaaatcattttagtttaatggcTAGCTTGTGTAAACACAAATTTTC
CAAGTTCAAATTTCTCACTTTAATTTGGGTTAACCATAGTGAAAAGATTT
CTAGAATTTGGATTGAGCTGGACTGAGTGAACTTCTGAATCAGTAGAATG
TGAACTTGTTGTTAGGGTTGATGTATACAGCAAATGTGTAACTGTGAAAA
TTGGCAGACTTTGGGCTAATCAGAAGAGTGTAAATGGTCTGCATGGAGAA
TGGAGCTGGGCgtgaattttgacATTTTTCCCTCTCTCAAAGAATATCAA
ACCACAAATTCTCAAATTTGTGCATTTTTGTGTTGCCAAAAATCAAAGTA
GCTGAACTGACTAAATATTTTATATACTTCCAAATTCATTGGAAGAGACT
CTCGAGAGAGATATCGATAACTTTTTAACACTTTTACCATCCTCAATTTC
CCTCAATTTATTTTCACAATAATTTGgaataaagaaataaataataaaaa
attcagACTCTGATAGTGCAGCTTATTACAAGGATAATTTTATCAGTTAA
TAAGTTGATATACTTTGAGCTAGATAGCGATTTTATGCGCATTGAAAAGA
TTATCGTGAGTGGGATattatcaacaaaaaaatttcaaaatggagatgaa
aaatgaaaaagaaaaaaaccaaCTCCTGGTAGAATTGTGATATAATCACC
ATTTTTACAGGGGATTCTTGAATCTTACAACATATCATTActgtgaaaaa
aacttttcaaaaatatttattcagtcaaaagatattgcACAAAGCTCATC
ACTGATTGACTCtgaaaaaacaccaaaaaacagCGAAAGACAGCCTTTTT
TACACTTAACTAGCTGAAGACTTTGTgtcataattttttaattgaataag
tatttttgaaatatacttTAATATGACAATTATATGACATGTATTTTTAA
GTGTAAATGATTAATTTGATCAAGTAAAATGAGATCAGGAAAATACAAGT
TAGGCGGTCCAATTGTAAAAAGAGGTTTGAATTCTGGTCATTGCCGCGTA
CTCTCGTGTAGATTCTACCACAAATggattaaagatttaaaaggACACCT
CGGGCGCGCTCATAATATGACGTTggtatctcataaaaaattacCTCCGT
CTCAGCTCAGTAGTGTCGTACAGAAAAATAAGGCAAACCAGATGTATGCA
TAGAAGACCAACCGTTTTCAAGCTGCTCACAAAGCCAATCATTGGGTCCA
GCCGTAACTGAGTTAGATATATTTGGAAAAGATGCTAGCGATAGCGAGAA
AGTGAATCAAAATCTCACAAGTGATGAAGAAAGCGATGGCGAAAGAAGTG
TTCTCGACTCTGATGTATCACTTTCTTCGCCTTTTTATCCTGGAATCATT
AGTCCAAGTCCTAAAAAAGATCTGGATATCACACGAGTTCGAAGAGTCAT
ACTACCGGAATTATGATAAAGAGTTTTATATACACAAACATTTTATATCT
TTACGAAAAAGAAACAATTTCTGAAATAACACGCTGTTAGtctctttaaa
acttttgatcatggtgtaatttattttcataattgTGTACATCACGTCGA
TCCATTTTGGGGG
Run BLAST on NCBI

transcript from alignment at sc0002351:442..4895+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040203 ID=TCONS_00040203|Name=TCONS_00040203|organism=Clytia hemisphaerica|type=transcript|length=4454bp|location=Sequence derived from alignment at sc0002351:442..4895+ (Clytia hemisphaerica)
GAggttatgagtacgaacggatgcgaaaatcaatttgtcccccgactttt
caagggccgtaggcgacgcaccggactctgcaagGCTTTGCCNAATAAGT
TTTTTCTCTTTATGCCTTTGCTGAggttatgagtacgaacggatgcgaaa
atcaatttgtcccccgacttttcaagggccgtaggcgacgcaccggactc
tgcaagGCTTTGcctattgcaagaccatatctcctggcaaacagattcca
tggtcgacgaatagttaacaagaaaagagtTTAAGGTGCCTTTAAAggga
taaaaaatgaaactttattAATCCAGGTATAGCAGATGAAAAATTCAGGT
CAAAGTCATATACAGATCCTTTCCAAGATTGTAATATAATCCGAATTTTA
GAATTTCCACTAAGGAGTCCATATTGAGGATCAGGATTGAGTCTAGAATA
AAATGACCATGGTATGTAAAGGAAACCTGTCATTTGCCATGTGTCAAGTG
GTCAATCAtaataaaagaattttgttCAACTATGGGTCTCCTTCTAGTCT
GCTCTaaatcattttagtttaatggcTAGCTTGTGTAAACACAAATTTTC
CAAGTTCAAATTTCTCACTTTAATTTGGGTTAACCATAGTGAAAAGATTT
CTAGAATTTGGATTGAGCTGGACTGAGTGAACTTCTGAATCAGTAGAATG
TGAACTTGTTGTTAGGGTTGATGTATACAGCAAATGTGTAACTGTGAAAA
TTGGCAGACTTTGGGCTAATCAGAAGAGTGTAAATGGTCTGCATGGAGAA
TGGAGCTGGGCgtgaattttgacattttttcctCTCTCAAAGAATATCAA
ACCACAAATTCTCAAATTTGTGCATTTTTGTGTTGCCAAAAATCAAAGTA
GCTGAACTGACTAATTATTTTATACNCATTTTTCCCTCTCTCAAAGAATA
TCAAACCACAAATTCTCAAATTTGTGCATTTTTGTGTTGCCAAAAATCAA
AGTAGCTGAACTGACTAAATATTTTATATACTTCCAAATTCATTGGAAGA
GACTCTCGAGAGAGATATCGATAACTTTTTAACACTTTTACCATCCTCAA
TTTCCCTCAATTTATTTTCACAATAATTTGgaataaagaaataaataata
aaaaattcagACTCTGATAGTGCAGCTTATTACAAGGATAATTTTATCAG
TTAATAAGTTGATATACTTTGAGCTAGATAGCGATTTTATGCGCATTGAA
AAGATTATCGTGAGTGGGATattatcaacaaaaaaatttcaaaatggaga
tgaaaaatgaaaaagaaaaaaaccaaCTCCTGGTAGAATTGTGATATAAT
CACCATTTTTACAGGGGATTCTTGAATCTTACAACATATCATTActgtga
aaaaaacttttcaaaaatatttattcagtcaaaagatattgcACAAAGCT
CATCACTGATTGACTCtgaaaaaacaccaaaaaacagCGAAAGACAGCCT
TTTTTACACTTAACTAGCTGAAGACTTTGTgtcataattttttaattgaa
taagtatttttgaaatatacttTAATATGACAATTATATGACATGTATTT
TTAAGTGTAAATGATTAATTTGATCAAGTAAAATGAGATCAGGAAAATAC
AAGTTAGGCGGTCCAATTGTAAGtaatttgtttgcttttttgataGAGAA
GAAGTCAAGTGATTCTCAGATTACAAGCTAAAGTTTCAAATCTAGAAATT
CTTGCTCTGACAAACATTGATATTATAAATATTGGCGTTTATTGAATCAG
ATATCTTACCAACAAAGCATACATAGTTTTTTGTAAAGAATTCTTTTTCA
AGAGTCACAGGGCTCAATATCGAGAAATTTTTAAGAGTTTTTCAAGAATA
ACACTGAACCTCAAATTTTGGCCGAAGAGGGTTCTTTTCAGACAACTTCT
ATGTTATTGAATGGTTGTGAAGAAGTAAATTGCACagggaaaaaatctaa
atttttgagacGAATTTTCGTGGCATATTCAAGTAAAATCATCTTTTAAT
ATCTTCAAAACTTAAAAGTCACTTAAGTTCgggaaaaattaagaattgcG
ACGCTCATTGTGTATTATTTTCTGTATCTTTTTAGGTAAAAAGAGGTTTG
AATTCTGGTCATTGCCGCGTACTCTCGTGTAGATTCTACCACAAATggat
taaagatttaaaaggACACCTCGGGCGCGCTCATAATATGACGTTggtat
ctcataaaaaattacCTCCGTCTCAGCTCAGTAGTGTCGTACAGAAAAAT
AAGGGTAAATATCATATGAAAAGTAGGAAAATTGAGCTATGTAGCCTAAA
GGGGTGTATACACTATATGCAACCTCAAACGGATCTTACCCGACATTTAA
AAAACTGTCACGCTGGTATGACGAAGAGGGAATATTATGCTAAAAGGTAC
TATCAAATTAAGTTTATGAACGTCTGACCATCTCGTTTCTTTTTAATCGG
CCTATGAACCCTATGAAGGCAAAAGTGGGCGGGGTATGAGGTAAAAGGGG
TGACCTGATCTTTCATGGGGGCTGCAGGAttttaagatttatttttttaa
actggTCACAATCCATTTTACCTTCAGTATTTAGATATTTGCCATTTGTA
TTTTTAATTCATTATAAGCCATAGTGTCTAGGTATTTAGTACCTCATAAT
GTATACATGTTTTTTCTTTTATAAGCAtaacgtttataagcatatgcagg
ctcagtttttggtacctaaacaatggctctattgtttgagaacaatagaa
tgctaagcataatgcgagcctgatgtaggggcagtcacttgcttataaaa
aaaaacatgtatttgaataaatgagaaagatttttaagcattcATTGAAC
TTTAATGTATGACAACAGCCTTTGATGGTTAAAGCCGAGAAAGTCTGGGG
GGGGCTATCATGAATCGAATTTTCTGGAGGGCGCTAAGTGAAAAGGGGGA
GCTGAATTTTCTGGGGAATTTGTTTATAACTCGTTTAAAATCTTTAAGCA
TCGTTATTCATTTGTCTTGTTTAGCAAACCAGATGTATGCATAGAAGACC
AACCGTTTTCAAGCTGCTCACAAAGCCAATCATTGGGTCCAGCCGTAACT
GAGTTAGATATATTTGGAAAAGGTATGACAATTCGATCTTTAATGATTGG
CACAAAAACTTATGCTGAAATAAACTGGGCAGAACTCGTAGACTAGAAAA
ATAGTCGTTAAAATCAGGTCCCAATACGACAAAATTCAagctcaaaagaa
aaagaattgtaTACCCTGGACTAGTCTCGTCTTCTTCTTAGTTTTTGGCT
AAATTTCAGGCCAAATTCTTatagaaattcaaattctcGTGTAAAACCGT
GTATTGAAATACTTAAATCATTTCAGAGTGTAACACCGACATATCACTCT
GAGGAATTCTTTTGAAGCctgaaaaatcctatttttttcCAGAAATGTTT
TTCCTTTATTGATTATAGATGCTAGCGATAGCGAGAAAGTGAATCAAAAT
CTCACAAGTGATGAAGAAAGCGATGGCGAAAGAAGTGTTCTCGACTCTGA
TGTATCACTTTCTTCGCCTTTTTATCCTGGAATCATTAGTCCAAGTCCTA
AAAAAGGTTTGTTAAATATTCCGCTTCTGTATTCTTTCACTTCAACGTAG
AATGCATTAGGCGTGCAAGTTATCGCGAGCAGAAAGTTTTGCGAGGTCGA
AATTTATgacatttacttttgcgaaaaaggccaatttttgaaaatcgcga
aagtttctgctcgcgaaagtttgtataATTAAAGCTGATTAAAGTAAAAC
CTTTGGTTGCTTTTCTCGAACATAAATGATAGATAGCATAAATAGGTCTC
ACTCTATTTTGATTTGCTTGATGTGATTAATGCCAATGATGTATCCTTTT
CCTACCgatattttaaaaacatacgTGTACgtacaaaaaaagtttcaaaa
tgatACATGTTAGATTTAGATTTAATATTTAAACCATATCAATACTACAA
GTTTGGTGTTATGTGTCGACACATAACATCAATGATGTAAAACAAAGtac
ttatttttttctaaaatgcaGGCCTCCCTGTTATGTGATGTTATTAGACC
CTGTTATTAGACCCTCCCCAACAACAACACTAAAAGAGTATCAAACGTAC
TCTCTTTTCCGTTGTTTCAAGGAAGCTGACTTTTgtaatctttatttttt
cattcgaCAGATCTGGATATCACACGAGTTCGAAGAGTCATACTACCGGA
ATTATGATAAAGAGTTTTATATACACAAACATTTTATATCTTTACGAAAA
AGAAACAATTTCTGAAATAACACGCTGTTAGtctctttaaaacttttgat
catggtgtaatttattttcataattgTGTACATCACGTCGATCCATTTTG
GGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024395XLOC_024395Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040203-exon-sc0002351-1491911889:442..1264TCONS_00040203-exon-sc0002351-1491911889:442..1264Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1510915933:442..1264TCONS_00040203-exon-sc0002351-1510915933:442..1264Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1575043694:442..1264TCONS_00040203-exon-sc0002351-1575043694:442..1264Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1491911889:1369..2109TCONS_00040203-exon-sc0002351-1491911889:1369..2109Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1510915933:1369..2109TCONS_00040203-exon-sc0002351-1510915933:1369..2109Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1575043694:1369..2109TCONS_00040203-exon-sc0002351-1575043694:1369..2109Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1491911889:2577..2745TCONS_00040203-exon-sc0002351-1491911889:2577..2745Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1510915933:2577..2745TCONS_00040203-exon-sc0002351-1510915933:2577..2745Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1575043694:2577..2745TCONS_00040203-exon-sc0002351-1575043694:2577..2745Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1491911889:3516..3613TCONS_00040203-exon-sc0002351-1491911889:3516..3613Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1510915933:3516..3613TCONS_00040203-exon-sc0002351-1510915933:3516..3613Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1575043694:3516..3613TCONS_00040203-exon-sc0002351-1575043694:3516..3613Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1491911889:3960..4097TCONS_00040203-exon-sc0002351-1491911889:3960..4097Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1510915933:3960..4097TCONS_00040203-exon-sc0002351-1510915933:3960..4097Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1575043694:3960..4097TCONS_00040203-exon-sc0002351-1575043694:3960..4097Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1491911889:4702..4895TCONS_00040203-exon-sc0002351-1491911889:4702..4895Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1510915933:4702..4895TCONS_00040203-exon-sc0002351-1510915933:4702..4895Clytia hemisphaericaexon
TCONS_00040203-exon-sc0002351-1575043694:4702..4895TCONS_00040203-exon-sc0002351-1575043694:4702..4895Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002351supercontigsc0002351:442..4895 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
216.788	324.672	612.761	681.574	203.771	2964.76	709.564	92.2875	161.941	283.179	988.904	216.501	110.433	280.472	274.258	113.884	908.499	213.314	1028.24	95.4804	122.339	162.101	222.923	163.487	365.184	315.347	335.228	680.094	178.741	263.254
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top