TCONS_00040202 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00040202
Unique Name	TCONS_00040202
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2305

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0002351:442..4895+
coding sequence from alignment at sc0002351:442..4895+

transcript sequence

>TCONS_00040202 ID=TCONS_00040202|Name=TCONS_00040202|organism=Clytia hemisphaerica|type=transcript|length=2305bp
GAggttatgagtacgaacggatgcgaaaatcaatttgtcccccgactttt
caagggccgtaggcgacgcaccggactctgcaagGCTTTGCCNAATAAGT
TTTTTCTCTTTATGCCTTTGCTGAggttatgagtacgaacggatgcgaaa
atcaatttgtcccccgacttttcaagggccgtaggcgacgcaccggactc
tgcaagGCTTTGcctattgcaagaccatatctcctggcaaacagattcca
tggtcgacgaatagttaacaagaaaagagtTTAAGGTGCCTTTAAAggga
taaaaaatgaaactttattAATCCAGGTATAGCAGATGAAAAATTCAGGT
CAAAGTCATATACAGATCCTTTCCAAGATTGTAATATAATCCGAATTTTA
GAATTTCCACTAAGGAGTCCATATTGAGGATCAGGATTGAGTCTAGAATA
AAATGACCATGGTATGTAAAGGAAACCTGTCATTTGCCATGTGTCAAGTG
GTCAATCAtaataaaagaattttgttCAACTATGGGTCTCCTTCTAGTCT
GCTCTaaatcattttagtttaatggcTAGCTTGTGTAAACACAAATTTTC
CAAGTTCAAATTTCTCACTTTAATTTGGGTTAACCATAGTGAAAAGATTT
CTAGAATTTGGATTGAGCTGGACTGAGTGAACTTCTGAATCAGTAGAATG
TGAACTTGTTGTTAGGGTTGATGTATACAGCAAATGTGTAACTGTGAAAA
TTGGCAGACTTTGGGCTAATCAGAAGAGTGTAAATGGTCTGCATGGAGAA
TGGAGCTGGGCgtgaattttgacATTTTTCCCTCTCTCAAAGAATATCAA
ACCACAAATTCTCAAATTTGTGCATTTTTGTGTTGCCAAAAATCAAAGTA
GCTGAACTGACTAAATATTTTATATACTTCCAAATTCATTGGAAGAGACT
CTCGAGAGAGATATCGATAACTTTTTAACACTTTTACCATCCTCAATTTC
CCTCAATTTATTTTCACAATAATTTGgaataaagaaataaataataaaaa
attcagACTCTGATAGTGCAGCTTATTACAAGGATAATTTTATCAGTTAA
TAAGTTGATATACTTTGAGCTAGATAGCGATTTTATGCGCATTGAAAAGA
TTATCGTGAGTGGGATattatcaacaaaaaaatttcaaaatggagatgaa
aaatgaaaaagaaaaaaaccaaCTCCTGGTAGAATTGTGATATAATCACC
ATTTTTACAGGGGATTCTTGAATCTTACAACATATCATTActgtgaaaaa
aacttttcaaaaatatttattcagtcaaaagatattgcACAAAGCTCATC
ACTGATTGACTCtgaaaaaacaccaaaaaacagCGAAAGACAGCCTTTTT
TACACTTAACTAGCTGAAGACTTTGTgtcataattttttaattgaataag
tatttttgaaatatacttTAATATGACAATTATATGACATGTATTTTTAA
GTGTAAATGATTAATTTGATCAAGTAAAATGAGATCAGGAAAATACAAGT
TAGGCGGTCCAATTGTAAAAAGAGGTTTGAATTCTGGTCATTGCCGCGTA
CTCTCGTGTAGATTCTACCACAAATggattaaagatttaaaaggACACCT
CGGGCGCGCTCATAATATGACGTTggtatctcataaaaaattacCTCCGT
CTCAGCTCAGTAGTGTCGTACAGAAAAATAAGGGTAAATATCATATGAAA
AGTAGGAAAATTGAGCTATGTAGCCTAAAGGGGTGTATACACTATATGCA
ACCTCAAACGGATCTTACCCGACATTTAAAAAACTGTCACGCTGGTATGA
CGAAGAGGGAATATTATGCTAAAAGCAAACCAGATGTATGCATAGAAGAC
CAACCGTTTTCAAGCTGCTCACAAAGCCAATCATTGGGTCCAGCCGTAAC
TGAGTTAGATATATTTGGAAAAGATGCTAGCGATAGCGAGAAAGTGAATC
AAAATCTCACAAGTGATGAAGAAAGCGATGGCGAAAGAAGTGTTCTCGAC
TCTGATGTATCACTTTCTTCGCCTTTTTATCCTGGAATCATTAGTCCAAG
TCCTAAAAAAGATCTGGATATCACACGAGTTCGAAGAGTCATACTACCGG
AATTATGATAAAGAGTTTTATATACACAAACATTTTATATCTTTACGAAA
AAGAAACAATTTCTGAAATAACACGCTGTTAGtctctttaaaacttttga
tcatggtgtaatttattttcataattgTGTACATCACGTCGATCCATTTT
GGGGG

Run BLAST on NCBI

protein sequence of TCONS_00040202-protein

>TCONS_00040202-protein ID=TCONS_00040202-protein|Name=TCONS_00040202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MRSGKYKLGGPIVKRGLNSGHCRVLSCRFYHKWIKDLKGHLGRAHNMTLV
SHKKLPPSQLSSVVQKNKGKYHMKSRKIELCSLKGCIHYMQPQTDLTRHL
KNCHAGMTKREYYAKSKPDVCIEDQPFSSCSQSQSLGPAVTELDIFGKDA
SDSEKVNQNLTSDEESDGERSVLDSDVSLSSPFYPGIISPSPKKDLDITR
VRRVILPEL

Run BLAST on NCBI

transcript from alignment at sc0002351:442..4895+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00040202 ID=TCONS_00040202|Name=TCONS_00040202|organism=Clytia hemisphaerica|type=transcript|length=4454bp|location=Sequence derived from alignment at sc0002351:442..4895+ (Clytia hemisphaerica)
GAggttatgagtacgaacggatgcgaaaatcaatttgtcccccgactttt
caagggccgtaggcgacgcaccggactctgcaagGCTTTGCCNAATAAGT
TTTTTCTCTTTATGCCTTTGCTGAggttatgagtacgaacggatgcgaaa
atcaatttgtcccccgacttttcaagggccgtaggcgacgcaccggactc
tgcaagGCTTTGcctattgcaagaccatatctcctggcaaacagattcca
tggtcgacgaatagttaacaagaaaagagtTTAAGGTGCCTTTAAAggga
taaaaaatgaaactttattAATCCAGGTATAGCAGATGAAAAATTCAGGT
CAAAGTCATATACAGATCCTTTCCAAGATTGTAATATAATCCGAATTTTA
GAATTTCCACTAAGGAGTCCATATTGAGGATCAGGATTGAGTCTAGAATA
AAATGACCATGGTATGTAAAGGAAACCTGTCATTTGCCATGTGTCAAGTG
GTCAATCAtaataaaagaattttgttCAACTATGGGTCTCCTTCTAGTCT
GCTCTaaatcattttagtttaatggcTAGCTTGTGTAAACACAAATTTTC
CAAGTTCAAATTTCTCACTTTAATTTGGGTTAACCATAGTGAAAAGATTT
CTAGAATTTGGATTGAGCTGGACTGAGTGAACTTCTGAATCAGTAGAATG
TGAACTTGTTGTTAGGGTTGATGTATACAGCAAATGTGTAACTGTGAAAA
TTGGCAGACTTTGGGCTAATCAGAAGAGTGTAAATGGTCTGCATGGAGAA
TGGAGCTGGGCgtgaattttgacattttttcctCTCTCAAAGAATATCAA
ACCACAAATTCTCAAATTTGTGCATTTTTGTGTTGCCAAAAATCAAAGTA
GCTGAACTGACTAATTATTTTATACNCATTTTTCCCTCTCTCAAAGAATA
TCAAACCACAAATTCTCAAATTTGTGCATTTTTGTGTTGCCAAAAATCAA
AGTAGCTGAACTGACTAAATATTTTATATACTTCCAAATTCATTGGAAGA
GACTCTCGAGAGAGATATCGATAACTTTTTAACACTTTTACCATCCTCAA
TTTCCCTCAATTTATTTTCACAATAATTTGgaataaagaaataaataata
aaaaattcagACTCTGATAGTGCAGCTTATTACAAGGATAATTTTATCAG
TTAATAAGTTGATATACTTTGAGCTAGATAGCGATTTTATGCGCATTGAA
AAGATTATCGTGAGTGGGATattatcaacaaaaaaatttcaaaatggaga
tgaaaaatgaaaaagaaaaaaaccaaCTCCTGGTAGAATTGTGATATAAT
CACCATTTTTACAGGGGATTCTTGAATCTTACAACATATCATTActgtga
aaaaaacttttcaaaaatatttattcagtcaaaagatattgcACAAAGCT
CATCACTGATTGACTCtgaaaaaacaccaaaaaacagCGAAAGACAGCCT
TTTTTACACTTAACTAGCTGAAGACTTTGTgtcataattttttaattgaa
taagtatttttgaaatatacttTAATATGACAATTATATGACATGTATTT
TTAAGTGTAAATGATTAATTTGATCAAGTAAAATGAGATCAGGAAAATAC
AAGTTAGGCGGTCCAATTGTAAGtaatttgtttgcttttttgataGAGAA
GAAGTCAAGTGATTCTCAGATTACAAGCTAAAGTTTCAAATCTAGAAATT
CTTGCTCTGACAAACATTGATATTATAAATATTGGCGTTTATTGAATCAG
ATATCTTACCAACAAAGCATACATAGTTTTTTGTAAAGAATTCTTTTTCA
AGAGTCACAGGGCTCAATATCGAGAAATTTTTAAGAGTTTTTCAAGAATA
ACACTGAACCTCAAATTTTGGCCGAAGAGGGTTCTTTTCAGACAACTTCT
ATGTTATTGAATGGTTGTGAAGAAGTAAATTGCACagggaaaaaatctaa
atttttgagacGAATTTTCGTGGCATATTCAAGTAAAATCATCTTTTAAT
ATCTTCAAAACTTAAAAGTCACTTAAGTTCgggaaaaattaagaattgcG
ACGCTCATTGTGTATTATTTTCTGTATCTTTTTAGGTAAAAAGAGGTTTG
AATTCTGGTCATTGCCGCGTACTCTCGTGTAGATTCTACCACAAATggat
taaagatttaaaaggACACCTCGGGCGCGCTCATAATATGACGTTggtat
ctcataaaaaattacCTCCGTCTCAGCTCAGTAGTGTCGTACAGAAAAAT
AAGGGTAAATATCATATGAAAAGTAGGAAAATTGAGCTATGTAGCCTAAA
GGGGTGTATACACTATATGCAACCTCAAACGGATCTTACCCGACATTTAA
AAAACTGTCACGCTGGTATGACGAAGAGGGAATATTATGCTAAAAGGTAC
TATCAAATTAAGTTTATGAACGTCTGACCATCTCGTTTCTTTTTAATCGG
CCTATGAACCCTATGAAGGCAAAAGTGGGCGGGGTATGAGGTAAAAGGGG
TGACCTGATCTTTCATGGGGGCTGCAGGAttttaagatttatttttttaa
actggTCACAATCCATTTTACCTTCAGTATTTAGATATTTGCCATTTGTA
TTTTTAATTCATTATAAGCCATAGTGTCTAGGTATTTAGTACCTCATAAT
GTATACATGTTTTTTCTTTTATAAGCAtaacgtttataagcatatgcagg
ctcagtttttggtacctaaacaatggctctattgtttgagaacaatagaa
tgctaagcataatgcgagcctgatgtaggggcagtcacttgcttataaaa
aaaaacatgtatttgaataaatgagaaagatttttaagcattcATTGAAC
TTTAATGTATGACAACAGCCTTTGATGGTTAAAGCCGAGAAAGTCTGGGG
GGGGCTATCATGAATCGAATTTTCTGGAGGGCGCTAAGTGAAAAGGGGGA
GCTGAATTTTCTGGGGAATTTGTTTATAACTCGTTTAAAATCTTTAAGCA
TCGTTATTCATTTGTCTTGTTTAGCAAACCAGATGTATGCATAGAAGACC
AACCGTTTTCAAGCTGCTCACAAAGCCAATCATTGGGTCCAGCCGTAACT
GAGTTAGATATATTTGGAAAAGGTATGACAATTCGATCTTTAATGATTGG
CACAAAAACTTATGCTGAAATAAACTGGGCAGAACTCGTAGACTAGAAAA
ATAGTCGTTAAAATCAGGTCCCAATACGACAAAATTCAagctcaaaagaa
aaagaattgtaTACCCTGGACTAGTCTCGTCTTCTTCTTAGTTTTTGGCT
AAATTTCAGGCCAAATTCTTatagaaattcaaattctcGTGTAAAACCGT
GTATTGAAATACTTAAATCATTTCAGAGTGTAACACCGACATATCACTCT
GAGGAATTCTTTTGAAGCctgaaaaatcctatttttttcCAGAAATGTTT
TTCCTTTATTGATTATAGATGCTAGCGATAGCGAGAAAGTGAATCAAAAT
CTCACAAGTGATGAAGAAAGCGATGGCGAAAGAAGTGTTCTCGACTCTGA
TGTATCACTTTCTTCGCCTTTTTATCCTGGAATCATTAGTCCAAGTCCTA
AAAAAGGTTTGTTAAATATTCCGCTTCTGTATTCTTTCACTTCAACGTAG
AATGCATTAGGCGTGCAAGTTATCGCGAGCAGAAAGTTTTGCGAGGTCGA
AATTTATgacatttacttttgcgaaaaaggccaatttttgaaaatcgcga
aagtttctgctcgcgaaagtttgtataATTAAAGCTGATTAAAGTAAAAC
CTTTGGTTGCTTTTCTCGAACATAAATGATAGATAGCATAAATAGGTCTC
ACTCTATTTTGATTTGCTTGATGTGATTAATGCCAATGATGTATCCTTTT
CCTACCgatattttaaaaacatacgTGTACgtacaaaaaaagtttcaaaa
tgatACATGTTAGATTTAGATTTAATATTTAAACCATATCAATACTACAA
GTTTGGTGTTATGTGTCGACACATAACATCAATGATGTAAAACAAAGtac
ttatttttttctaaaatgcaGGCCTCCCTGTTATGTGATGTTATTAGACC
CTGTTATTAGACCCTCCCCAACAACAACACTAAAAGAGTATCAAACGTAC
TCTCTTTTCCGTTGTTTCAAGGAAGCTGACTTTTgtaatctttatttttt
cattcgaCAGATCTGGATATCACACGAGTTCGAAGAGTCATACTACCGGA
ATTATGATAAAGAGTTTTATATACACAAACATTTTATATCTTTACGAAAA
AGAAACAATTTCTGAAATAACACGCTGTTAGtctctttaaaacttttgat
catggtgtaatttattttcataattgTGTACATCACGTCGATCCATTTTG
GGGG

Coding sequence (CDS) from alignment at sc0002351:442..4895+

>TCONS_00040202 ID=TCONS_00040202|Name=TCONS_00040202|organism=Clytia hemisphaerica|type=CDS|length=3150bp|location=Sequence derived from alignment at sc0002351:442..4895+ (Clytia hemisphaerica)
ATGAGATCAGGAAAATACAAGTTAGGCGGTCCAATTGTAAAAAGAGGTTT
GAATTCTGGTCATTGCCGCGTACTCTCGTGTAGATTCTACCACAAATgga
ttaaagatttaaaaggACACCTCGGGCGCGCTCATAATATGACGTTggta
tctcataaaaaattacCTCCGTCTCAGCTCAGTAGTGTCGTACAGAAAAA
TAAGGGTAAATATCATATGAAAAGTAGGAAAATTGAGCTATGTAGCCTAA
AGGGGTGTATACACTATATGCAACCTCAAACGGATCTTACCCGACATTTA
AAAAACTGTCACGCTGGTATGACGAAGAGGGAATATTATGCTAAAAGCAA
ACCAGATGTATGCATAGAAGACCAACCGTTTTCAAGCTGCTCACAAAGCC
AATCATTGGGTCCAGCCGTAACTGAGTTAGATATATTTGGAAAAGATGCT
AGCGATAGCGAGAAAGTGAATCAAAATCTCACAAGTGATGAAGAAAGCGA
TGGCGAAAGAAGTGTTCTCGACTCTGATGTATCACTTTCTTCGCCTTTTT
ATCCTGGAATCATTAGTCCAAGTCCTAAAAAAGATCTGGATATCACACGA
GTTCGAAGAGTCATACTACCGGAATTATGAATGAGATCAGGAAAATACAA
GTTAGGCGGTCCAATTGTAAAAAGAGGTTTGAATTCTGGTCATTGCCGCG
TACTCTCGTGTAGATTCTACCACAAATggattaaagatttaaaaggACAC
CTCGGGCGCGCTCATAATATGACGTTggtatctcataaaaaattacCTCC
GTCTCAGCTCAGTAGTGTCGTACAGAAAAATAAGGGTAAATATCATATGA
AAAGTAGGAAAATTGAGCTATGTAGCCTAAAGGGGTGTATACACTATATG
CAACCTCAAACGGATCTTACCCGACATTTAAAAAACTGTCACGCTGGTAT
GACGAAGAGGGAATATTATGCTAAAAGCAAACCAGATGTATGCATAGAAG
ACCAACCGTTTTCAAGCTGCTCACAAAGCCAATCATTGGGTCCAGCCGTA
ACTGAGTTAGATATATTTGGAAAAGATGCTAGCGATAGCGAGAAAGTGAA
TCAAAATCTCACAAGTGATGAAGAAAGCGATGGCGAAAGAAGTGTTCTCG
ACTCTGATGTATCACTTTCTTCGCCTTTTTATCCTGGAATCATTAGTCCA
AGTCCTAAAAAAGATCTGGATATCACACGAGTTCGAAGAGTCATACTACC
GGAATTATGAATGAGATCAGGAAAATACAAGTTAGGCGGTCCAATTGTAA
AAAGAGGTTTGAATTCTGGTCATTGCCGCGTACTCTCGTGTAGATTCTAC
CACAAATggattaaagatttaaaaggACACCTCGGGCGCGCTCATAATAT
GACGTTggtatctcataaaaaattacCTCCGTCTCAGCTCAGTAGTGTCG
TACAGAAAAATAAGGGTAAATATCATATGAAAAGTAGGAAAATTGAGCTA
TGTAGCCTAAAGGGGTGTATACACTATATGCAACCTCAAACGGATCTTAC
CCGACATTTAAAAAACTGTCACGCTGGTATGACGAAGAGGGAATATTATG
CTAAAAGCAAACCAGATGTATGCATAGAAGACCAACCGTTTTCAAGCTGC
TCACAAAGCCAATCATTGGGTCCAGCCGTAACTGAGTTAGATATATTTGG
AAAAGATGCTAGCGATAGCGAGAAAGTGAATCAAAATCTCACAAGTGATG
AAGAAAGCGATGGCGAAAGAAGTGTTCTCGACTCTGATGTATCACTTTCT
TCGCCTTTTTATCCTGGAATCATTAGTCCAAGTCCTAAAAAAGATCTGGA
TATCACACGAGTTCGAAGAGTCATACTACCGGAATTATGAATGAGATCAG
GAAAATACAAGTTAGGCGGTCCAATTGTAAAAAGAGGTTTGAATTCTGGT
CATTGCCGCGTACTCTCGTGTAGATTCTACCACAAATggattaaagattt
aaaaggACACCTCGGGCGCGCTCATAATATGACGTTggtatctcataaaa
aattacCTCCGTCTCAGCTCAGTAGTGTCGTACAGAAAAATAAGGGTAAA
TATCATATGAAAAGTAGGAAAATTGAGCTATGTAGCCTAAAGGGGTGTAT
ACACTATATGCAACCTCAAACGGATCTTACCCGACATTTAAAAAACTGTC
ACGCTGGTATGACGAAGAGGGAATATTATGCTAAAAGCAAACCAGATGTA
TGCATAGAAGACCAACCGTTTTCAAGCTGCTCACAAAGCCAATCATTGGG
TCCAGCCGTAACTGAGTTAGATATATTTGGAAAAGATGCTAGCGATAGCG
AGAAAGTGAATCAAAATCTCACAAGTGATGAAGAAAGCGATGGCGAAAGA
AGTGTTCTCGACTCTGATGTATCACTTTCTTCGCCTTTTTATCCTGGAAT
CATTAGTCCAAGTCCTAAAAAAGATCTGGATATCACACGAGTTCGAAGAG
TCATACTACCGGAATTATGAATGAGATCAGGAAAATACAAGTTAGGCGGT
CCAATTGTAAAAAGAGGTTTGAATTCTGGTCATTGCCGCGTACTCTCGTG
TAGATTCTACCACAAATggattaaagatttaaaaggACACCTCGGGCGCG
CTCATAATATGACGTTggtatctcataaaaaattacCTCCGTCTCAGCTC
AGTAGTGTCGTACAGAAAAATAAGGGTAAATATCATATGAAAAGTAGGAA
AATTGAGCTATGTAGCCTAAAGGGGTGTATACACTATATGCAACCTCAAA
CGGATCTTACCCGACATTTAAAAAACTGTCACGCTGGTATGACGAAGAGG
GAATATTATGCTAAAAGCAAACCAGATGTATGCATAGAAGACCAACCGTT
TTCAAGCTGCTCACAAAGCCAATCATTGGGTCCAGCCGTAACTGAGTTAG
ATATATTTGGAAAAGATGCTAGCGATAGCGAGAAAGTGAATCAAAATCTC
ACAAGTGATGAAGAAAGCGATGGCGAAAGAAGTGTTCTCGACTCTGATGT
ATCACTTTCTTCGCCTTTTTATCCTGGAATCATTAGTCCAAGTCCTAAAA
AAGATCTGGATATCACACGAGTTCGAAGAGTCATACTACCGGAATTATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_024395	XLOC_024395	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00040202-protein	TCONS_00040202-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002351	supercontig	sc0002351:442..4895 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.1461	18.0732	8.75193	9.12568	124.294	133.029	94.9232	111.715	68.3132	72.1413	72.5775	77.2147	102.736	82.5827	65.1933	63.4641	43.3653	54.1362	22.5917	20.6533	54.9748	55.1387	24.1184	22.1629	3.99726	11.7815	39.3	30.4235	37.0924	34.2936

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00040202 vs. Swiss-Prot (Human)

BLAST of TCONS_00040202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00040202 (transcript) - C. hemisphaerica