TCONS_00040191 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040191
Unique NameTCONS_00040191
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length840

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040191 ID=TCONS_00040191|Name=TCONS_00040191|organism=Clytia hemisphaerica|type=transcript|length=840bp
AACgattgtctttaaaaatattcgatgtaaaatttacaaaatcaagtaaa
atattaaaaatatgcTTTCTCTACTAGAAACGATCAGCTTCTCATTGCTG
CAGGAGCtaagaaaaaatcattcaaatggTTCAACAAAGTGGGATTTACG
AATTCATACACAACCGCACTTAACAAAAACAAGCAGTTAGCAGTCGACCA
CGATAAGATCGTAATCGAGTGGAAGCAGGCAATCGAAAACGCAGCAAAGT
CAATTTGTGACCTTTTTCCAGATTCGACACctgaagaatttaaaaaagag
cTCAAAGAACGGATATTGGCAGAGTATCAGCTTATCGGAGACAACATTGA
TTTCGAGCAGATAGTCCGGCATCAAAGCAAACTGAATCAAAACAAGAGTA
TTCATTGGTTTCATTATATGGCCGTGAAAGAAAGATTCCACAGTTCTCAA
GATTTGCGTTCAGCTGATTTCTACAAAAACATggacattcttccaaatgg
tcaAGCGCAAAGAACTCTTGAAGATAATTTTACAACATTGATTGCTCGCT
CCATCGTTTCATATCTTCCAGCATTTAAATCGTTTAGCAAGCATGTTCCT
AAGCATTTAAAGCATCAGTTAACCCATGAAATGTCCAAAAAGTCTGAAGT
GGTACCGTTGGGTTTGATTTTCCGACAAGAAACAGTCAACGCTGAAATGA
TTCAGATTATGCAGGAGATGCAAAAATATGTACCAAAACTCTACAATGAC
GACAAGAGTGTAAAGGATATTGTGGAACCAATCCCATTTGGTGGTGATCA
GTTGACAGTAGAGAGAGCTACTAACTGCAAAGTCGCCATG
Run BLAST on NCBI

protein sequence of TCONS_00040191-protein

>TCONS_00040191-protein ID=TCONS_00040191-protein|Name=TCONS_00040191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MAVKERFHSSQDLRSADFYKNMDILPNGQAQRTLEDNFTTLIARSIVSYL
PAFKSFSKHVPKHLKHQLTHEMSKKSEVVPLGLIFRQETVNAEMIQIMQE
MQKYVPKLYNDDKSVKDIVEPIPFGGDQLTVERATNCKVAM
Run BLAST on NCBI

transcript from alignment at sc0002349:11193..12488+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040191 ID=TCONS_00040191|Name=TCONS_00040191|organism=Clytia hemisphaerica|type=transcript|length=1296bp|location=Sequence derived from alignment at sc0002349:11193..12488+ (Clytia hemisphaerica)
AACgattgtctttaaaaatattcgatgtaaaatttacaaaatcaagtaaa
atattaaaaatatgcTTTCTCTACTAGAAACGATCAGCTTCTCATTGCTG
CAGGAGCtaagaaaaaatcattcaaatggTTCAACAAAGTGGGATTTACG
AATTCATACACAACCGCACTTAACAAAAACAAGCAGTTAGCAGTCGACCA
CGATAAGATCGTAATCGAGTGGAAGCAGGCAATCGAAAACGCAGCAAAGT
CAATTTGTGACCTTTTTCCAGATTCGACACctgaagaatttaaaaaagag
cTCAAAGAACGGATATTGGCAGAGTATCAGGTAAATATTCATAGTAGGAA
AAATTCAGGGGAGGGGTTGATCAAGCAGGTTGGGGTACGGAGAGGCGTTA
CCCACTATGAATAGTAAattaatatataaaaaatatgtatacAAATACAG
CATGATGAATCTTACTTCAAATTTACTAgcaatatatattttcttctaTT
TCAAGCTTATCGGAGACAACATTGATTTCGAGCAGATAGTCCGGCATCAA
AGCAAACTGAATCAAAACAAGAGTATTCATTGGTTTCATTATATGGCCGT
GAAAGAAAGATTCCACAGTTCTCAAGGTAATTTTTTCGAAGATTGGCGTC
ATAAGCTCCATTGATGCAATACGATATGATACGATTCATTTCTTTGACCT
AAATGGctttagaaagatttttcaagttgaaattACAAGTGTGCCAGCTA
TTACTCTATTATATCTTGCCACTTCCATTGTTCACATAATTATCTTTTAG
ATTTGCGTTCAGCTGATTTCTACAAAAACATggacattcttccaaatggt
caAGCGCAAAGAACTCTTGAAGATAATTTTACAACATTGATTGCTCGCTC
CATCGTTTCATATCTTCCAGCATTTAAATCGTTTAGCAAGCATGTTCCTA
AGCATTTAAAGCATCAGTTAACCCATGAAATGTCCAAAAAGTCTGAAGTG
GTATGCACGATTCAAACTCTTctacatttttttaattattattttgtttt
gactgtAAAGAAAGAGAAATATAAAACATTAAATAGTAATTAATATCTTA
ATCCCAGGTACCGTTGGGTTTGATTTTCCGACAAGAAACAGTCAACGCTG
AAATGATTCAGATTATGCAGGAGATGCAAAAATATGTACCAAAACTCTAC
AATGACGACAAGAGTGTAAAGGATATTGTGGAACCAATCCCATTTGGTGG
TGATCAGTTGACAGTAGAGAGAGCTACTAACTGCAAAGTCGCCATG

Coding sequence (CDS) from alignment at sc0002349:11193..12488+

>TCONS_00040191 ID=TCONS_00040191|Name=TCONS_00040191|organism=Clytia hemisphaerica|type=CDS|length=1269bp|location=Sequence derived from alignment at sc0002349:11193..12488+ (Clytia hemisphaerica)
ATGGCCGTGAAAGAAAGATTCCACAGTTCTCAAGATTTGCGTTCAGCTGA
TTTCTACAAAAACATggacattcttccaaatggtcaAGCGCAAAGAACTC
TTGAAGATAATTTTACAACATTGATTGCTCGCTCCATCGTTTCATATCTT
CCAGCATTTAAATCGTTTAGCAAGCATGTTCCTAAGCATTTAAAGCATCA
GTTAACCCATGAAATGTCCAAAAAGTCTGAAGTGGTACCGTTGGGTTTGA
TTTTCCGACAAGAAACAGTCAACGCTGAAATGATTCAGATTATGCAGGAG
ATGCAAAAATATGTACCAAAACTCTACAATGACGACAAGAGTGTAAAGGA
TATTGTGGAACCAATCCCATTTGGTGGTGATCAGTTGACAGTAGAGAGAG
CTACTAACTGCAAAGTCGCCATGATGGCCGTGAAAGAAAGATTCCACAGT
TCTCAAGATTTGCGTTCAGCTGATTTCTACAAAAACATggacattcttcc
aaatggtcaAGCGCAAAGAACTCTTGAAGATAATTTTACAACATTGATTG
CTCGCTCCATCGTTTCATATCTTCCAGCATTTAAATCGTTTAGCAAGCAT
GTTCCTAAGCATTTAAAGCATCAGTTAACCCATGAAATGTCCAAAAAGTC
TGAAGTGGTACCGTTGGGTTTGATTTTCCGACAAGAAACAGTCAACGCTG
AAATGATTCAGATTATGCAGGAGATGCAAAAATATGTACCAAAACTCTAC
AATGACGACAAGAGTGTAAAGGATATTGTGGAACCAATCCCATTTGGTGG
TGATCAGTTGACAGTAGAGAGAGCTACTAACTGCAAAGTCGCCATGATGG
CCGTGAAAGAAAGATTCCACAGTTCTCAAGATTTGCGTTCAGCTGATTTC
TACAAAAACATggacattcttccaaatggtcaAGCGCAAAGAACTCTTGA
AGATAATTTTACAACATTGATTGCTCGCTCCATCGTTTCATATCTTCCAG
CATTTAAATCGTTTAGCAAGCATGTTCCTAAGCATTTAAAGCATCAGTTA
ACCCATGAAATGTCCAAAAAGTCTGAAGTGGTACCGTTGGGTTTGATTTT
CCGACAAGAAACAGTCAACGCTGAAATGATTCAGATTATGCAGGAGATGC
AAAAATATGTACCAAAACTCTACAATGACGACAAGAGTGTAAAGGATATT
GTGGAACCAATCCCATTTGGTGGTGATCAGTTGACAGTAGAGAGAGCTAC
TAACTGCAAAGTCGCCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024390XLOC_024390Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040191-exon-sc0002349-1491911889:11193..11522TCONS_00040191-exon-sc0002349-1491911889:11193..11522Clytia hemisphaericaexon
TCONS_00040191-exon-sc0002349-1510915933:11193..11522TCONS_00040191-exon-sc0002349-1510915933:11193..11522Clytia hemisphaericaexon
TCONS_00040191-exon-sc0002349-1575043694:11193..11522TCONS_00040191-exon-sc0002349-1575043694:11193..11522Clytia hemisphaericaexon
TCONS_00040191-exon-sc0002349-1491911889:11698..11818TCONS_00040191-exon-sc0002349-1491911889:11698..11818Clytia hemisphaericaexon
TCONS_00040191-exon-sc0002349-1510915933:11698..11818TCONS_00040191-exon-sc0002349-1510915933:11698..11818Clytia hemisphaericaexon
TCONS_00040191-exon-sc0002349-1575043694:11698..11818TCONS_00040191-exon-sc0002349-1575043694:11698..11818Clytia hemisphaericaexon
TCONS_00040191-exon-sc0002349-1491911889:11993..12192TCONS_00040191-exon-sc0002349-1491911889:11993..12192Clytia hemisphaericaexon
TCONS_00040191-exon-sc0002349-1510915933:11993..12192TCONS_00040191-exon-sc0002349-1510915933:11993..12192Clytia hemisphaericaexon
TCONS_00040191-exon-sc0002349-1575043694:11993..12192TCONS_00040191-exon-sc0002349-1575043694:11993..12192Clytia hemisphaericaexon
TCONS_00040191-exon-sc0002349-1491911889:12300..12488TCONS_00040191-exon-sc0002349-1491911889:12300..12488Clytia hemisphaericaexon
TCONS_00040191-exon-sc0002349-1510915933:12300..12488TCONS_00040191-exon-sc0002349-1510915933:12300..12488Clytia hemisphaericaexon
TCONS_00040191-exon-sc0002349-1575043694:12300..12488TCONS_00040191-exon-sc0002349-1575043694:12300..12488Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040191-proteinTCONS_00040191-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002349supercontigsc0002349:11193..12488 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.337348	0.383795	0.254642	0	4.54932	3.29536	3.75885	4.2634	2.4931	2.11273	3.41779	1.79737	2.62469	2.30802	1.16074	2.11754	4.13635	3.64155	1.4563	2.65833	6.07584	5.17607	2.3807	3.19253	0.664025	3.07088	3.73518	3.74759	3.26257	3.46946
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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