TCONS_00040183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040183
Unique NameTCONS_00040183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040183 ID=TCONS_00040183|Name=TCONS_00040183|organism=Clytia hemisphaerica|type=transcript|length=303bp
ACAACGTCGTGCACAAGAAACTGGTTACACAGGCCTTAATCTTCTTACAA
AATTGAATGATCTTTATGGTTTTGACCCAACAAAGGATACTGTCCGTGAA
GCGATGCATCTGGTTAGGTTGAACCTATGCAAGAAGTTGTTTAGGCGATA
TTTTAATTGTGGAGAATTTGACATTGATGGGCTTCAGGATAAACTGGCTG
AATTTCCATTTACATCTGAAATGTTGGATGGCCATTGCCCACGCAATGTA
CACAAATTCAAATCGTGGACTGCCGAAGAATGGAAGATTTTTGCGTTCCC
TGT
Run BLAST on NCBI

protein sequence of TCONS_00040183-protein

>TCONS_00040183-protein ID=TCONS_00040183-protein|Name=TCONS_00040183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
QRRAQETGYTGLNLLTKLNDLYGFDPTKDTVREAMHLVRLNLCKKLFRRY
FNCGEFDIDGLQDKLAEFPFTSEMLDGHCPRNVHKFKSWTAEEWKIFAFP
Run BLAST on NCBI

transcript from alignment at sc0002346:12142..14988-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040183 ID=TCONS_00040183|Name=TCONS_00040183|organism=Clytia hemisphaerica|type=transcript|length=2847bp|location=Sequence derived from alignment at sc0002346:12142..14988- (Clytia hemisphaerica)
ACAACGTCGTGCACAAGAAACTGGTTACACAGGCCTTAATCTTCTTACAA
AATTGAATGATCTTTATGGTTTTGACCCAACAAAGGATACTGTCCGTGAA
GCGATGCATCTGGTTAGGTTGAACCTATGCAAGAAGTTGTTTAGGCGATA
TTTTAATTGTGGAGAATTTGACATTGATGGGCTTCAGGATAAACTGGCTG
AATTTCCATTTACATCTGGTTAGTAAACTCGGTTCTTCAAACTCTTTTCC
TATGATAGGGGTCAATGTGTGAAAGCACAATTTTAAACAAAGTTACTTCA
CATGTACTGTAACTGATACAAATCCAAAAGAATCTGTGTGTGACGCTTTT
TTCCAAACTTATCCTGTGTAAATTTCGAGAATGACACTTTTAAGTATCAG
AAAGTTTTTTAGCTTTCTATTTACAGATTTTTTCTCTTTTAAGAAATTAT
GTTACACACTTGATAATCCCCGACTTCATAGATTCTAATCCCTTTTTTTC
TGCTTATTTTTAGGGGGTTAGCGTCTTGTTATTTAGGAGGGTTCAAGTTT
TTGTAAAATCTTTGTTTGTGCGGCTGTTAGTTAAATAAAAAAGCTGCAAA
TAGCTTTTGTTTTTAAATACCTTATTCAAACAAATTTTGGCGGGAAGAAA
ATTTCGCGGATTTGCCTTAAACCCACCAAATTAAGTTCCCCTCAAATATA
ATTTTATTCGCAATTTTCAAATTAAATTCCTGCCAAATTTAATTTTTTCC
GTTTTTAAGTTTGATTTTTCACAACTTAAGTACCATTGACCGCAATAATA
AGCATTGTTTGTTAAAATGTTGTTGAATTTGTTTGTTATAAACATTGGTA
GTGCATAGAATGCACCCGGCTGAGCTTAGGGAGGGGCGAAGCCATTTTTG
CTTGTTTGGGAGCTGTATTAAAAAAAACTGGTGGCTAGCTTGCTAGGGGC
TGAGTGTTGAGTAATAGAACTTGGGACAGCTGATAGGTTACAAATCTATG
CTTTGGAGAAGGTTTTCACACCAGCTATAAAGTATTTTGCCTGCGGAGCA
ATAAATTTATTGAGATTATCATGCATAATTTCTATGATGTTATGTAAAGG
TGTGGGCTATTTTCCTTAGCCTCATTATCATTATTGTTATTATCATTAAT
TTATTTGTCACAGGTCAGGTTCTATATACAAAACTATATATACAAGCTAT
ATACAATTCTATATATATTGGCAGTAAAAACGGATGTGGACCTGCAGGCT
AAGAAACAAAAAAGTAAAACCGATGCAAAGGCGAAATGTATTTTATGCAA
AAATAAGACTAAGGCTAGGTTAATTAAAGTGTGTCTGAGAAATTAATGAA
GAGGATTTAGAATATGTAAATCTTATGTGTTACAAATAAATAATTTAAAA
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTGATACCCCTTTTTTACGTGTTTTTAACACTTTCCGAAA
AGTGAATTTTGACTTTAAAAGCTCATAAGTAGAGAACAAGTCGGTCAAAT
TTAAAAAGTGATAACTTAAATTTTAAGTTAGGATATCTACTTTCTAAATA
TCAAAACTCCAAGCACTTTGTGACATTTGTTCGGCCTCAAGTTGTCGGGA
AACGTCCGAACTTTTTCGTGGGTCACCCGGTATATGTTATGTTTTTATAA
ATATATAAAGTATAAAAATAATAAATATGTTTTCGGTTATGATATATGAT
ATAACTTTAGTAATAAATGAAGTCTTCGTGAAGAAGAGCTCTTCCTGTCA
TTTTGAAATTAACTTTTTCAAGGCAGTCTGATTTTTTCAGATCCTTCTTG
AAGAATTTGAAATTGTCCGTATTTTTAATTCTGTCTGGAATATTGTTCCA
TACAATAGCATTTCTGTAGCGAAATGAACGTTTGAAAGCAACATATTTGA
ATGGAGACATATCGATTTTCAGNTTTCTTGACATGACCAAGATTTTGCTT
TTATCAGGGTGAATCGTTAAGGAGTTTCGTTTGGCATAACTCTCTAATTG
ACAAGCACTGTTTTGGAGGCTGTCAAGAACATCATCAGCAGTTGGTCCAG
TGGTATAGGTTGTTGAGTCATCTGCAAGCTGGTCTAAATCACTTTCAATA
CAATCACTCATATCGTTTACATTGATTGATGGAAAAACTTGGTGGTCCAA
TTAGAGATCCTTGCGGAACACCATATTCGACTCTTTCAAGGTTGGATTCG
ATTCCATTTAGTGATGTNTTTGGCTAGGACAGCATTATCACGAACAGACT
TTTTGACTCGATTTATGAACCGTGCAGCCTTTATGTGGACATTCTCGACA
TACGACATAAGATTCTCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCTTTCTGTTA
CTAAGGTAGCTCGTTAGGTATGAGAGAAAATCTCCAGATATTCCAGAAGC
ACTCATTTTCTTTAATAGGATTGGGTGTGACACGCTATCGAACGCCTTGC
GAAAGTCGATAAACAGGACTGCGACTACCTCATTTTTGTCGATAGATTTC
CTCCACTTTTCTTACTCGCCCTTAACAATGCTGGGGGCTGGACTCCTCTG
CACACTATGTAGTGAGAGTTTATTAAGGGGGTCTTCATTTTTACATTGTA
ATATTACTTCAGAAATGTTGGATGGCCATTGCCCACGCAATGTACACAAA
TTCAAATCGTGGACTGCCGAAGAATGGAAGATTTTTGCGTTCCCTGT

Coding sequence (CDS) from alignment at sc0002346:12142..14988-

>TCONS_00040183 ID=TCONS_00040183|Name=TCONS_00040183|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0002346:12142..14988- (Clytia hemisphaerica)
AAATGTTGGATGGCCATTGCCCACGCAATGTACACAAATTCAAATCGTGG
ACTGCCGAAGAATGGAAGATTTTTGCGTTCCCTCAACGTCGTGCACAAGA
AACTGGTTACACAGGCCTTAATCTTCTTACAAAATTGAATGATCTTTATG
GTTTTGACCCAACAAAGGATACTGTCCGTGAAGCGATGCATCTGGTTAGG
TTGAACCTATGCAAGAAGTTGTTTAGGCGATATTTTAATTGTGGAGAATT
TGACATTGATGGGCTTCAGGATAAACTGGCTGAATTTCCATTTACATCTG
AAATGTTGGATGGCCATTGCCCACGCAATGTACACAAATTCAAATCGTGG
ACTGCCGAAGAATGGAAGATTTTTGCGTTCCCTCAACGTCGTGCACAAGA
AACTGGTTACACAGGCCTTAATCTTCTTACAAAATTGAATGATCTTTATG
GTTTTGACCCAACAAAGGATACTGTCCGTGAAGCGATGCATCTGGTTAGG
TTGAACCTATGCAAGAAGTTGTTTAGGCGATATTTTAATTGTGGAGAATT
TGACATTGATGGGCTTCAGGATAAACTGGCTGAATTTCCATTTACATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024382XLOC_024382Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040183-proteinTCONS_00040183-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040183-exon-sc0002346-1575043694:14771..14988TCONS_00040183-exon-sc0002346-1575043694:14771..14988Clytia hemisphaericaexon
TCONS_00040183-exon-sc0002346-1575043694:12142..12226TCONS_00040183-exon-sc0002346-1575043694:12142..12226Clytia hemisphaericaexon
TCONS_00040183-exon-sc0002346-1510915933:14771..14988TCONS_00040183-exon-sc0002346-1510915933:14771..14988Clytia hemisphaericaexon
TCONS_00040183-exon-sc0002346-1510915933:12142..12226TCONS_00040183-exon-sc0002346-1510915933:12142..12226Clytia hemisphaericaexon
TCONS_00040183-exon-sc0002346-1491911889:14771..14988TCONS_00040183-exon-sc0002346-1491911889:14771..14988Clytia hemisphaericaexon
TCONS_00040183-exon-sc0002346-1491911889:12142..12226TCONS_00040183-exon-sc0002346-1491911889:12142..12226Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002346supercontigsc0002346:12142..14988 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.367683	0.426915	0	0.508472	0.803603	0.969513	0	0.317732	1.18069	2.29201	0	0	0	0.214101	0.459526	0.28305	0	0.400812	0.419421	0.364553	0.533448	0	0	0	0.361293	0.517009	0	0.418495	0.426381
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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