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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040182 ID=TCONS_00040182|Name=TCONS_00040182|organism=Clytia hemisphaerica|type=transcript|length=635bp
CTTTTTTACTCAGATACAAAGAAATCCCCACTAACAACAAAAAAATCGAA
GCAACTATTGCAAAACAAGAAGTAAAACGTGAAGTCTTGgccattttaca
aaaaaaaacaagagaaTGACTTATCAAATTGATCATGTCAATGGGCTCGT
TTCAAGTCTCCAAGGAACAATTGACCACAGTGATGCTCAGCACCCTGTTT
TTTATATTGGAGCGCTCACCCTCACGTTAGATAACGTTCATGGTGTAGAT
GAAAATCTTAAGGAGACATTGAGGCTACTCGGAACAGATGACGAGGACGT
GTACCAATCATTCCGATCATGTTACTTATTCAACCAACAATCGGTTTTAA
AGATCGGAACATTCGTTTGTCTTGCTGATGGAGTGGTTAGTAAGATAGGC
GAATTTATGTTTACAAGGGTAGCCAAATTCGTTCGGTTACAAACGTACAA
TTTCACTGGCATGACGATCAAGGGTTTCAAGGTTTTACAACCGACTGGAA
ATAGTAAAGTTGTTCAGATAAGTGTGGTTCGACGGAAAGTGATTGTTTAC
AACGGAAATAACGATTTACTTTTTGTCGATTTTGACCGaccaagtttttc
ttttaatttcaaTGCTGTGCCTCCTGTTATAGAGT Run BLAST on NCBI protein sequence of TCONS_00040182-protein >TCONS_00040182-protein ID=TCONS_00040182-protein|Name=TCONS_00040182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MTYQIDHVNGLVSSLQGTIDHSDAQHPVFYIGALTLTLDNVHGVDENLKE
TLRLLGTDDEDVYQSFRSCYLFNQQSVLKIGTFVCLADGVVSKIGEFMFT
RVAKFVRLQTYNFTGMTIKGFKVLQPTGNSKVVQISVVRRKVIVYNGNND
LLFVDFDRPSFSFNFNAVPPVIE Run BLAST on NCBI transcript from alignment at sc0002346:7894..11720- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040182 ID=TCONS_00040182|Name=TCONS_00040182|organism=Clytia hemisphaerica|type=transcript|length=3827bp|location=Sequence derived from alignment at sc0002346:7894..11720- (Clytia hemisphaerica)
CTTTTTTACTCAGATACAAAGAAATCCCCACTAACAACAAAAAAATCGAA
GCAACTATTGCAAAACAAGAAGTAAAACGTGAAGTCTTGGCCATTTTACA
AAAAAAAACAAGAGAATGACTTATCAAATTGATCATGTCAATGGGGTAAG
CTAGTTGTTGTCTTTTATGTTACACCAATTAAAGAAACAAAGAGTACAGT
TTCAGTAGCCAGAGTTAATGAGCGAGAATAAAAGTGATGGTCAAACAGGG
AGGTCAAGCAGTTAGCACAAGACACTATGCCTACTACCTTATTGGTATAT
ATTTTCGCGTGTTACAAATTTTCGCGGGTACTTAATTTCGCGAGTTTTAT
GGTCAATTTTCGCGAAATATAATACTGTATAAATTTTTCAAAATTACAAA
ATCGCAAAATGAAATACACGCGAAAAAATTTTTCTTAGTATTTTGTTAGT
ATTTTTACATCAAAAACGTTGTTCCAAGCAAAATCAGTCTTTTTCTTGCT
TTATATATTCCCACTTTCTGAAAATACCTAGTTTAGTGAATCGCAAAATT
TAACAGCCGCGAAAATTTTCCAGAAGTCGGCAATCGCGAAATTTAATACA
CGCGAAACACGTTTTTTCGAAAACAATTCGCGATTCGCGAAAATTTGTAA
CACGCGAAAATATATACCAATAAGTTCACTGCTTTTCTGCAAGAAGTTTG
TAACACCACCACCCTTTGTACACTTAGTACAGTTGGTAATAACTGAACTT
TGGGTCAAATTTACATACACCACCCTTGAAAAATGGCTTTTTGTCCACCA
TAAAAGCTATAAAATCTAATAAAACAAAATCAAATATATTAACTGTTTCA
ATTTTCAATCTTTCAATAGGAAATTACGACATTTTTATTATTTTAGAACA
TCCAATTTCTATCGTGTAAAATACGATGTTTTCTTGAAAATTTCCTCATA
AAATTTCATTTTTCACGCAGTTTTTACTAACATTTTGCAATTTTTTTGCA
GTTAGTAATGATTTCATAGAATTCACATGGCACACCACCATGCATAGTGT
CTAGTACTACAATGACCCCCCCCCCCCCTTGGGCCAAAAAATATCCCCTG
TTTATTTTGAAACTACAAAGAGTTTTTTTCAGCCAATAAATCAACAAATT
ACATCATTGTCGCAGAATTGTAAATAGCCGGTGTTGTTGTGAGCTTCTCT
GTTTGTTGTTCACGATTTACCGATGGGGTAATTATTTTCCAAAACTTGCT
GACATCATCATAAAATTACCCGATTTTTCAAAGATATATTTTTAAGTCCT
CACTGGTGGTATAATTACTTGCTTTATTTAGCAGATTCAACCAATGAAGT
ACAAGCCCGAAGGGCTAGAATCGAATCTCTATGGTGGGATTTGAAGCCTT
CCCATCCCACCAAAGTTGCGCGCCCTTGAGCGACCCAGCTTTTTTTTCTA
CAAATAACAGATAGAAACTAAAATTTTTCCCTAGCTTTCAAAAAATATAC
CACTCAAAAACAAAGAAATCACTTAAGCCTATCCGTCTCGCCAAAACACC
GCACCGCGCATATTATAAAGCTTCACTTTTTCTTGCCTCAGAAAAGATTC
GATTCTACCTTAAAGGGGCAATCCCAGCCACGTAACACGGTTTGCTTTTG
TTTTTCTAAAACTCGATTACTTTTAGGGTGCATAGGGGAATTTCCAGTTG
AGGCGGAGTGATCGAGATAAAAATATCACGTGACTTTTGACGGGAAAAAA
ATCAAAACAAACTTATGAGAACTGATGGATGGCACAAAAAACTATCTTCC
TTTCTCAGAAAAAAGCTATCATTTTGTTTCAGCTGAAGGCTTCATATAAG
ATTTTTATAATGACTCCTAGTTATCTCAAATTATCTAAATCTCCCTCGGC
AGTAGCAATTCAATATGATTTGATTTATAGGTAAAAAAGAAATGGTTTGA
AAAACAAAGAGCACAGGATAATTTTTATAAGTAGATGTAAAGATGTTATT
TTTTATTGAAACATACAAGTGTCTGAAATGTTACAAGAAAATCTATGAAA
ATTTTAGATTATAAATTTAGAATCTTTAGTCCAAAAAAGGTTCCTCAAAG
CTTTCTAATAATAGCACCAAAAACAAAGGCTCCTATGTCTTTTCTTTAAA
ATTATATAAAGTTAAGGAAAGAAAATACTTATAAATCTCTGACAGGCTTT
GACACGTTTTGATGAAACATGGAAACCTCGAAACAATGCTTTCGTGGAAA
ACCTATCACATAAACACTACTGAAATTCTATGAAATAAACGAGAATTAAT
TGATAANTGTGGACAATCTATCACATAAACACTACTGAAATTCTATGAAA
TAAGCAAGAATTAATTGATAAAAAATGAAATTGAAATAACTTATTACATT
GGAGCACTAAAAGATAACACTACAACAATCCAAACAAGAAATGACGTCGC
GTTAAAACATTCAAAAATATACTCAAAGCCAAGATGCAATATATTTATTA
AATACATGCTCACAGTATCTCTAGTCAGGGAAAACAATCACACATTCAAA
AGTGTCTTTAACTTTAGTCAGGAAAACAACCAAAACAATCACACAAGTTT
CAAGAGTTTAGAAAACCCACAAAACCTCTGACCTCGTGAATATAAGAACC
AAGCATTAAAGACTTTGTTTTGGAGTCACTCGGTAAACAAATCTCATATA
ACTTGTTCCAGAGATATTGTCCATATAAGAGTTTATATTTCAAAGCAAAA
ATAATTCTCGTACTGCCCATTTTTCTCATCAATTCTTCAACTTGAACCAG
TTTCACATCTTAATAGAACGTTAATACTATTTTGCCAACCATTTAATGTC
CAAAGTTATGGGGATGTAGCGTTTTCTTCATGTCAAGCAAATGTCTCTGA
AATCTTTTAGTTGGTTGGTTTGGTATTCGGAAGAGGTAATCCATGGATAT
CTTTGTAATCAATGATGAAAAACTCTTAAAATTACTGATGATTACAGTTG
AAGTGTTAGCCTCACATTTCATGTAATTATTGGTCGCCAATTAGATGAAA
ATTGTATGTTTTTTGTTCGTCAGAAAAGAGTTATAACTTTTAAAAAGCCA
AGAGTGGATTTTCGTCCATCTTGTATTTTGATCTGAATTATTCGTGTCTT
GATTACTCAAAAACATGCGCGTAACATCAAGGTAAATCCGTGCGATTTTG
TCTGAATAACTAAGGCAAATGAAAACAAAAACAAACTACGCAATGTGGTG
GCGGATTGCCCCTTTAAGTGGATTTAATTTGGATTCAACGTTTGTTTGAA
AAATATTTAAGATTGATCAAACTGATTCTTTTTCCAGCTCGTTTCAAGTC
TCCAAGGAACAATTGACCACAGTGATGCTCAGCACCCTGTTTTTTATATT
GGAGCGCTCACCCTCACGTTAGATAACGTTCATGGTGTAGATGAAAATCT
TAAGGAGACATTGAGGCTACTCGGAACAGATGACGAGGACGTGTACCAAT
CATTCCGATCATGTTACTTATTCAACCAACAATCGGTTTTAAAGATCGGA
ACATTCGTTTGTCTTGCTGATGGAGTGGTTAGTAAGATAGGCGAATTTAT
GTTTACAAGGGTAGCCAAATTCGTTCGGTTACAAACGTACAATTTCACTG
GCATGACGATCAAGGGTTTCAAGGTTTTACAACCGACTGGAAATAGTAAA
GTTGTTCAGATAAGTGTGGTTCGACGGAAAGTGATTGTTTACAACGGAAA
TAACGATTTACTTTTTGTCGATTTTGACCGACCAAGTTTTTCTTTTAATT
TCAATGCTGTGCCTCCTGTTATAGAGT Coding sequence (CDS) from alignment at sc0002346:7894..11720- >TCONS_00040182 ID=TCONS_00040182|Name=TCONS_00040182|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at sc0002346:7894..11720- (Clytia hemisphaerica)
CTCGTTTCAAGTCTCCAAGGAACAATTGACCACAGTGATGCTCAGCACCC
TGTTTTTTATATTGGAGCGCTCACCCTCACGTTAGATAACGTTCATGGTG
TAGATGAAAATCTTAAGGAGACATTGAGGCTACTCGGAACAGATGACGAG
GACGTGTACCAATCATTCCGATCATGTTACTTATTCAACCAACAATCGGT
TTTAAAGATCGGAACATTCGTTTGTCTTGCTGATGGAGTGGTTAGTAAGA
TAGGCGAATTTATGTTTACAAGGGTAGCCAAATTCGTTCGGTTACAAACG
TACAATTTCACTGGCATGACGATCAAGGGTTTCAAGGTTTTACAACCGAC
TGGAAATAGTAAAGTTGTTCAGATAAGTGTGGTTCGACGGAAAGTGATTG
TTTACAACGGAAATAACGATTTACTTTTTGTCGATTTTGACCGACCAAGT
TTTTCTTTTAATTTCAATGCTGTGCCTCCTGTTATAGAGATGACTTATCA
AATTGATCATGTCAATGGGCTCGTTTCAAGTCTCCAAGGAACAATTGACC
ACAGTGATGCTCAGCACCCTGTTTTTTATATTGGAGCGCTCACCCTCACG
TTAGATAACGTTCATGGTGTAGATGAAAATCTTAAGGAGACATTGAGGCT
ACTCGGAACAGATGACGAGGACGTGTACCAATCATTCCGATCATGTTACT
TATTCAACCAACAATCGGTTTTAAAGATCGGAACATTCGTTTGTCTTGCT
GATGGAGTGGTTAGTAAGATAGGCGAATTTATGTTTACAAGGGTAGCCAA
ATTCGTTCGGTTACAAACGTACAATTTCACTGGCATGACGATCAAGGGTT
TCAAGGTTTTACAACCGACTGGAAATAGTAAAGTTGTTCAGATAAGTGTG
GTTCGACGGAAAGTGATTGTTTACAACGGAAATAACGATTTACTTTTTGT
CGATTTTGACCGACCAAGTTTTTCTTTTAATTTCAATGCTGTGCCTCCTG
TTATAGAGATGACTTATCAAATTGATCATGTCAATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040182-exon-sc0002346-1575043694:11576..11720 | TCONS_00040182-exon-sc0002346-1575043694:11576..11720 | Clytia hemisphaerica | exon |
| TCONS_00040182-exon-sc0002346-1575043694:7894..8383 | TCONS_00040182-exon-sc0002346-1575043694:7894..8383 | Clytia hemisphaerica | exon |
| TCONS_00040182-exon-sc0002346-1510915933:11576..11720 | TCONS_00040182-exon-sc0002346-1510915933:11576..11720 | Clytia hemisphaerica | exon |
| TCONS_00040182-exon-sc0002346-1510915933:7894..8383 | TCONS_00040182-exon-sc0002346-1510915933:7894..8383 | Clytia hemisphaerica | exon |
| TCONS_00040182-exon-sc0002346-1491911889:11576..11720 | TCONS_00040182-exon-sc0002346-1491911889:11576..11720 | Clytia hemisphaerica | exon |
| TCONS_00040182-exon-sc0002346-1491911889:7894..8383 | TCONS_00040182-exon-sc0002346-1491911889:7894..8383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002346 | supercontig | sc0002346:7894..11720 - |
Blast
The following BLAST results are available for this feature:
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