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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040180 ID=TCONS_00040180|Name=TCONS_00040180|organism=Clytia hemisphaerica|type=transcript|length=731bp
AGACATGTGTGATACTCCCAAGAAAACGTGTAATTGCTCGGGTGTTCCAG
TGATATACGATATGTCCAAATTACAAACCAATGACACTTTCTATGGGATT
GATGAAACGGCTGTGAATGCTTCGCTCACTTCTATCGGGATCTGGGATGC
AGAACAGATAAAACTGGTTTGCAAACAAGCTCAATGCAAGGAAGATCAAC
TGCAAAATGCAATCGAGGGCATTCAGATAAACATGACATCTTTGCAATCA
TCTCTGGACATTGCAGCTCTCTCCCAAATTCTCATTCGTAAGATGATCGA
TTGTCACGCCAATGTTTGGTCAAGAAAAGGAGAATTATTTGATCATTATG
AACAGCTTTGTCAACGCAAAGTGATCATTCAACAAGTTTTGAgtgatttg
aaaatcaaaaagataatcttggaaaatgaaaagaagAGATGTGCTGATAG
AAGCTGGCTTCGACACGTGCTTGAAGATACTTGGCATAACGTGGTGCCCT
CCTTATAAATGGACTTGATTCAATAAAGTTTCACAAGAGGACGCACAGAT
TAAAATGGATGTTTGActgaaaacacaagaaaaagaacaaatatCTGTCA
TATGCAGGAAAACTAAAATATATGTTGATAATTAAATtgttggaaaactt
ttgaaaaattcaaatcgCTTAGAACTCTTTTTAAAACCCAAAATTGCTGA
AATATTGGTCCAGATGACTTCAAATGTTGAT Run BLAST on NCBI transcript from alignment at sc0002345:21004..24416- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040180 ID=TCONS_00040180|Name=TCONS_00040180|organism=Clytia hemisphaerica|type=transcript|length=3413bp|location=Sequence derived from alignment at sc0002345:21004..24416- (Clytia hemisphaerica)
AGACATGTGTGATACTCCCAAGAAAACGTGTAATTGCTCGGGTGTTCCAG
TGATATACGATATGTCCAAATTACAAACCAATGACACTTTCTATGGGATT
GATGAAACGGCTGTGAATGCTTCGCTCACTTCTATCGGGATCTGGGATGC
AGAACAGATAAAACTGGTTTGCAAACGTGAGTGTATTGTCAAACGAATGA
TCGTTTTCGTTTATCAATTTTGATTTTGGATTATTTTCAAAGATCGATTT
AAGGTGGAGGATGTTTGTATTTGTACCAAGACCTTCTGATTACCTGTGAT
AATTAGTAATTTCCTAACAAAGATGTGTGATGACGATTGAAAATTCAGTT
CAAACTTGCAGATATCTAACTCTTTAATGCAACTTACTGTTCATTGAGAT
CGGCCTATGAGTTTCAAATTTTGCCATTTCTCAACAAAAGGTTTTAAAAC
TCCCTAGTAAAATGAAGGAAAAGTATCGAAAATAGGGCAAAACTGCGAAA
ATTAATTCCCGCGAAAATCAGTTCCCGCTAAAATTCGTTCCCTTAAGGTA
GCATCCCGGACAAGTCACTCTCTGATTTATGCTAACGTTAAGTAGAGTCC
CATTTTTTATAAGAAAGTTCTGTTATATTTTTAGAAGCTCAATGCAATGA
AGATCAACTTCAACATGCAATTGAGGGCATCCTANTGCAACTTACTGTTC
ATTGAGATCGGCCTATGGATGTTTTTCGAACATCATAAGAAAAGGATAGC
ATCTCAGACAAGTCACTCTTTGCTTCTCGCTAACGTTAAGAAGAGTTTTT
CAATTTTTATAAGAAAGTTCTGTTATATCTTTAGAAGCTCAATGCAAGGA
AGATCAACTGCAAAATGCAATCGAGGGCATTCAGATAAACATGACATCTT
TGCAATCATCTCTGGACATTGCAGCTCTCTCCCAAATTCTCATTCGTAAG
ATGATCGATTGTCACGCCAATGTTTGGTCAAGAAAAGGAGAATTATTTGA
TCATTATGAACAGCTTTGTCAACGCAAAGTGATCATTCAACAAGTTTTGA
GTGATTTGAAAATCAAAAAGATAATCTTGGAAAATGAAAAGAAGAGATGT
GCTGATAGAAGTAAGTTTTGTGTCACGTTATTTTTTCATAAGAACAAACT
TTATAAGAACATAAGGCTTCGATGTCCAAAATATATGAATTAGTTAAGAA
CATTTTAAGGCTTTGCGGACTCTTAATCGCCCATGCAGCACCAAATTTCT
AAGGAAACTGAATAAAGATAGAGGAAAAATGAGGAACAAAATGAGGAAAA
TAAGATCTTATTAAGAGCATTTAAGCTTAGAACTTTAAAAATGTTAGAAA
CATCTAAAGACCGCAAATATTTTGGAGGATAAAAGTTTTGGATGAAAAAA
TAATGTAAAATTGAAAAAAATGTTGTATGTATGTCGAGATTTCAAAATTA
AACAAGACGACTCGGAAGTCGAAAATTTCGCATAATATTCAAGATTGAGA
AATATTGACCATAAAATAACGAGGTTAAGCAGGGGGATATCTGCAGAAGG
ATATTGTACACAAGGTTGTAGATACCATTTTACTTTCTCATAGAGAACCT
AAATCCTATCCATAAACCACCATCAAGATTCTTTTTTATAAGCGTAGAAA
AGGCTTCTATAGATGGCAATTTCACAATTGACTTCGTACAGAAGAATACT
GAGTAGATATTATCCTAGGCTAAGTCTATATTTATCTGCTTTTTTTACTT
GTTATGAATCATACTTCTTAAAAAGTATATAAGTGTAACTTGCACTCAAA
AATGAATACTCTAATAATAAATACCCAAAGGCTCAATCTGAGTTAGATTT
TTCCAAATTGAAAAATGAGAGTATCAATTAATAAACTGACTAAAATATGG
CTGTTTTTAGCCCAAATTTTCCAACCGAATGAAAATATGGTAAAAAAGCT
CAACCGAGGCTTGTGGCCAAGACAGAATAAGGGGCTTATTTTTAGCACTT
GTCACTCATTTGTTCCCACCTGCTGTACCCCTATTTCAGGTTCGCATTTT
ATTAAACAATAGAGCCATTGTTTGGATATCAAAATACATGCTTATAGAAA
GGCAAAGCGGAGGCAAAGTTATGCTTATGGAAAAAAAACATTATTGACCT
TTGCAAATCTTCTTAGCAGCATAGGGTCAACCTCCCTCCACCCGTTAACA
GCCAAATACCATTAAAAATTGAAAATGGTTTGTTGATGGCCCCTTCAGGA
GTGAAATGGCAGGGTCGTAGCCTTATTTAACCTGGGCATTGTGTCCAAAA
AAAAGGTCTATTTAACACTCTCCCACTCGTTACAATCAATAACTTTTTCC
AACAATGACCAATGGTGGATAAGATATAGATTGATTTCCACCTTCACATG
TTTTGGGCGTGCTCAGCCCAGTTTTTTGGAGGCAAAAATGAAAAAGTTTG
TGACCTTTAACCACAGAAAGCCCTATCTATTTCCACGAAACAGCGCTCGA
AGTACAGGTGAATCATAGATTGAAAAAAGATAAATCATTTTGAAAATGAC
GTCATTTATATGCAAAACTATGCAAATCTATTTCGGAAATCTATGATTTG
TATGAAAAATAGCTGCTTGCATATGAATGTGATCAATGACGAAAAGCTCT
ATTCATCTCACTATCAACACCTATGACTAATTACTAAAAAATATTATACC
TGTGTTTATTGTATTGAAGGGTTCTGTTGTCAGTTGTGGGGTGTGTGGTG
AAAAAGAAACCAAAAACTCTTACTACTGAGCACTGTAAAAGTTTATTGGT
GCATTCACAAACATAAGACGTTAAGTAGTAAAAGAAGAAAGTAGTAAAAG
TTACCTGAGAACATAATAAAAATATATACAGCAGCAAAAGTGTACAAAAG
TGTTGACTTCAAGCAGCCATTAAAACGCTTTCACGAGGAATGTTTACGAA
CCCTTGGTTACACTCACCTTGTAGAATCATTAAAGAAACGCCGTTATTCA
TCTTTCTGCGTGAGTCCATCTATAGAATATTCAGTGCCGAGTGTTGATTT
TTAGCACCACCTCGAAAACAGAAAACCGATTGTAATACTTTCGCTATGCG
AAATATATTATATTGATTTTTTTTCTTCAACCAGGCTGGCTTCGACACGT
GCTTGAAGATACTTGGCATAACGTGGTGCCCTCCTTATAAATGGACTTGA
TTCAATAAAGTTTCACAAGAGGACGCACAGATTAAAATGGATGTTTGACT
GAAAACACAAGAAAAAGAACAAATATCTGTCATATGCAGGAAAACTAAAA
TATATGTTGATAATTAAATTGTTGGAAAACTTTTGAAAAATTCAAATCGC
TTAGAACTCTTTTTAAAACCCAAAATTGCTGAAATATTGGTCCAGATGAC
TTCAAATGTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040180-exon-sc0002345-1575043694:24241..24416 | TCONS_00040180-exon-sc0002345-1575043694:24241..24416 | Clytia hemisphaerica | exon |
| TCONS_00040180-exon-sc0002345-1575043694:23307..23582 | TCONS_00040180-exon-sc0002345-1575043694:23307..23582 | Clytia hemisphaerica | exon |
| TCONS_00040180-exon-sc0002345-1575043694:21004..21282 | TCONS_00040180-exon-sc0002345-1575043694:21004..21282 | Clytia hemisphaerica | exon |
| TCONS_00040180-exon-sc0002345-1510915933:24241..24416 | TCONS_00040180-exon-sc0002345-1510915933:24241..24416 | Clytia hemisphaerica | exon |
| TCONS_00040180-exon-sc0002345-1510915933:23307..23582 | TCONS_00040180-exon-sc0002345-1510915933:23307..23582 | Clytia hemisphaerica | exon |
| TCONS_00040180-exon-sc0002345-1510915933:21004..21282 | TCONS_00040180-exon-sc0002345-1510915933:21004..21282 | Clytia hemisphaerica | exon |
| TCONS_00040180-exon-sc0002345-1491911889:24241..24416 | TCONS_00040180-exon-sc0002345-1491911889:24241..24416 | Clytia hemisphaerica | exon |
| TCONS_00040180-exon-sc0002345-1491911889:23307..23582 | TCONS_00040180-exon-sc0002345-1491911889:23307..23582 | Clytia hemisphaerica | exon |
| TCONS_00040180-exon-sc0002345-1491911889:21004..21282 | TCONS_00040180-exon-sc0002345-1491911889:21004..21282 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002345 | supercontig | sc0002345:21004..24416 - |
Blast
The following BLAST results are available for this feature:
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