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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040177 ID=TCONS_00040177|Name=TCONS_00040177|organism=Clytia hemisphaerica|type=transcript|length=2617bpRun BLAST on NCBI transcript from alignment at sc0002345:196..20853- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00040177 ID=TCONS_00040177|Name=TCONS_00040177|organism=Clytia hemisphaerica|type=transcript|length=20658bp|location=Sequence derived from alignment at sc0002345:196..20853- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00040177 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 178.718 bits (452), Expect = 1.541e-45 Identity = 96/212 (45.28%), Postives = 125/212 (58.96%), Query Frame = 3
Query: 1806 TACGSGTESRSRDCNNPTPLPGGS-CNGPSTESQSCNDGPCPVDGQWGSWTSWNTCTESCAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTHPCPIHGVWTGWGSWQSCNITCGGGEENRTRTCTNPPPQHGGDPCSGDPIDIQSCNIHPCPIHGNWSQWSNWTECDKPCGVGFQNRSRTCTNPPPQHGGDNCTDHDAERSFCNEHPC 2438
CG G + RSR CN P P GG C G E ++C + PCPVDG W W+ W CT SC G +R+R+C++PS HGG C G+A + CN PCP+HG W+ W W +C+ +CG G + R R C NPPP GG C G +Q CN CPIHG W+ W++W+ C CG G + R+R C++P PQ+GG C D + FCN PC
Sbjct: 4543 VTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 2 Score: 174.096 bits (440), Expect = 3.690e-44 Identity = 103/215 (47.91%), Postives = 129/215 (60.00%), Query Frame = 3
Query: 1809 ACGSGTESRSRDCNNPTPLPGGS-CNGPSTESQSCNDGPCPVDGQWGSWTSWNTCTESCAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTHPCPIHGVWTGWGSWQSCNITCGGGEENRTRTCTNPPPQHGGDPCSGDPIDIQSCNIHPCPIHGNWSQWSNWTECDKPCGVGFQNRSRTCTNPPPQHGGDNCTDHDAERSFCNEHPCTDMC 2450
+CG G ++R+R CNNP+ GG C G + E CN PCPV G W +W W TC+ESC GT +R+R C++P P GGS C G+ + Q CN CPIHG W W SW +C+++CGGG RTR C++P PQ+GG C G + CN PCP HGNWS WS W C + C G R RTC NPPP +GG C D++ CN TDMC
Sbjct: 4601 SCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCN----TDMC 4811 HSP 3 Score: 164.466 bits (415), Expect = 4.617e-41 Identity = 95/211 (45.02%), Postives = 125/211 (59.24%), Query Frame = 3
Query: 1809 ACGSGTESRSRDCNNPTPLPGGS-CNGPSTESQSCNDGPCPVDGQWGSWTSWNTCTESCAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTHPCPIHGVWTGWGSWQSCNITCGGGEENRTRTCTNPPPQHGGDPCSGDPIDIQSCNIHPCPIHGNWSQWSNWTECDKPCGVGFQNRSRTCTNPPPQHGGDNCTDHDAERSFCNEHPC 2438
+CG GT++R+R CNNP P GGS C+G T+ Q CN+ CP+ G+W +W SW+ C+ SC GG R+R C P P +GG +C GS S CN+ PCP HG W+ W W +C+ TC GG+ R RTC NPPP +GG C G IQ CN CP+ G+W W +W++C CG G + R R C +P P GG C + + CN C
Sbjct: 4658 SCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 4 Score: 138.658 bits (348), Expect = 5.522e-33 Identity = 76/170 (44.71%), Postives = 99/170 (58.24%), Query Frame = 3
Query: 1929 VDGQWGSWTSWNTCTESCAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTHPCPIHGVWTGWGSWQSCNITCGGGEENRTRTCTNPPPQHGGDPCSGDPIDIQSCNIHPCPIHGNWSQWSNWTECDKPCGVGFQNRSRTCTNPPPQHGGDNCTDHDAERSFCNEHPC 2438
V G + W++W C+ +C G RSR C+ P P +GG C GS + ++C PCP+ G W+ W W+ C +CG G + RTRTC NP QHGG PC G+ ++I CNI PCP+HG WS W W C + CG G Q R+R C NPPP GG C + + CNE C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697 HSP 5 Score: 111.694 bits (278), Expect = 1.115e-24 Identity = 70/156 (44.87%), Postives = 88/156 (56.41%), Query Frame = 3
Query: 1806 TACGSGTESRSRDCNNPTPLPGG-SCNGPSTESQSCNDGPCPVDGQWGSWTSWNTCTESCAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTHPCPIHGVWTGWGSWQSCNITCGGGEENRTRTCTNPPPQHGGDPCSGDPIDIQSCNIHPCP 2270
+CG G R+R C++P P GG C G +S CN PCP G W W+ W TC+ +C GG R R+CD+P P +GG C G S Q CNT CP+ G W W SW C+ +CGGGE+ R R C +P P GG PC GD + CN+ CP
Sbjct: 4714 VSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00040177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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