TCONS_00040175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040175
Unique NameTCONS_00040175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040175 ID=TCONS_00040175|Name=TCONS_00040175|organism=Clytia hemisphaerica|type=transcript|length=390bp
ACCTCTTGGTATAGTTCATTTCTTTGGTGAATCTGAGGAAAGCGTTCATT
GGATCAGAACCAGTGGATAAAACAAAGACCAACGGAATGGTCGAAGACAT
ATCTTCGTAAAGGATTTGAAGATCCACAGCTGGACTTTCCACAAATTCTT
GACCTTGTTGAACTTATTTATTTGTATAAATTCAGTGATAGCGAAAGTGA
CTTTTTCTTCTCTGAATGCTTTGATAATGATAAGCCTTTGGAAATTGGTA
AGTTCATGTTCAAGGCATGCCATTTCGGGTGATATATCGGTCGTGTAGCT
GTCACATTGCTCTGGGTTGATGTCGACCTACAGccagaaattgaaattct
taAAGTTTATTTATATATTCATCAACCCAGTCCTGAAACG
Run BLAST on NCBI

transcript from alignment at sc0002341:4452..4841

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040175 ID=TCONS_00040175|Name=TCONS_00040175|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at sc0002341:4452..4841 (Clytia hemisphaerica)
CGTTTCAGGACTGGGTTGATGAATATATAAATAAACTTtaagaatttcaa
tttctggCTGTAGGTCGACATCAACCCAGAGCAATGTGACAGCTACACGA
CCGATATATCACCCGAAATGGCATGCCTTGAACATGAACTTACCAATTTC
CAAAGGCTTATCATTATCAAAGCATTCAGAGAAGAAAAAGTCACTTTCGC
TATCACTGAATTTATACAAATAAATAAGTTCAACAAGGTCAAGAATTTGT
GGAAAGTCCAGCTGTGGATCTTCAAATCCTTTACGAAGATATGTCTTCGA
CCATTCCGTTGGTCTTTGTTTTATCCACTGGTTCTGATCCAATGAACGCT
TTCCTCAGATTCACCAAAGAAATGAACTATACCAAGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024377XLOC_024377Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040175-exon-sc0002341-1491911889:4452..4841TCONS_00040175-exon-sc0002341-1491911889:4452..4841Clytia hemisphaericaexon
TCONS_00040175-exon-sc0002341-1510915933:4452..4841TCONS_00040175-exon-sc0002341-1510915933:4452..4841Clytia hemisphaericaexon
TCONS_00040175-exon-sc0002341-1575043694:4452..4841TCONS_00040175-exon-sc0002341-1575043694:4452..4841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002341supercontigsc0002341:4452..4841 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.82334	2.10992	3.09797	2.14575	3.23841	4.50823	2.54747	2.61774	3.41714	4.13363	3.55389	3.97758	0.782159	0.81228	0.556504	0.994981	0.882862	2.11145	2.50035	0.91537	1.81784	1.84352	1.79793	2.31963	2.97039	3.52867	4.0393	2.82377	2.27325	0.942979
Blast
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BLAST of TCONS_00040175 vs. Swiss-Prot (Human)
Match: DYH6 (Dynein heavy chain 6, axonemal OS=Homo sapiens GN=DNAH6 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.260e-18
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = -3 
Query:    2 GQEFVESPAVDLQILYEDMSSTIPLVFVLSTGSDPMNAFLRFTKEMNYTKR 154
            G++F+E+P VDL  LY+DMS   PLVF+LSTGSDPM AF RF +E  Y++R
Sbjct: 3518 GKQFIETPPVDLPTLYQDMSCNTPLVFILSTGSDPMGAFQRFARESGYSER 3568

HSP 2 Score: 34.2686 bits (77), Expect = 2.260e-18
Identity = 14/26 (53.85%), Postives = 22/26 (84.62%), Query Frame = -1 
Query:  175 LTNFQRLIIIKAFREEKVTFAITEFI 252
            L++F +LI+IK  +EEKV FA+T+F+
Sbjct: 3488 LSSFHKLILIKCCKEEKVVFALTDFV 3513
The following BLAST results are available for this feature:
BLAST of TCONS_00040175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH62.260e-1860.78Dynein heavy chain 6, axonemal OS=Homo sapiens GN=... [more]
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