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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040174 ID=TCONS_00040174|Name=TCONS_00040174|organism=Clytia hemisphaerica|type=transcript|length=721bp
AGTTGCTGAAATACTGAATGTGTAAAAAGTATAAGCAAAAGAAGATATGA
TATCAGAGCGGGTAAGAGCGCCAGCATGTTTAGAAAGTCTGCTCTCGTGG
GTTCAGCCTTTAATGACAGCCAAGGTGAGAACTGTGTTTTTATCGAAGAA
AACATGCATTCAATCGCAGTTCCATCTCCTCGTGCTTCGACTTCGACTGA
ATTACTGTCCTACCATCAAGAAACGAAATAATAACAAACACCAGAGATGG
TAAACCGATGACGAACAGAATGACTGCCgtAAATTTTGGGACTTGCGCAC
ATTCACAGCTGAATAGCGCTGACAAAATTGTGTTATAAAAGCAGCGTCTG
AACGAGTATTGAAGACAGTGCTGACTTATGTGAATTATTGGAAAGATTTC
AATGAACAGGTCATACATAGGGAAGATCAATAAGTTTTTGCTATGACAAA
TGGTGAATACTACCGAAAGCAAATTACAGGATTTAAGAAAATAATACACG
AAGAATACAAAGAgactcaaccaagtacaacgaCCTTTGCATCACATCTG
ACAATACTTTGTAAATACCCTGACTATCAGCAGTTATATAATTGGTATTT
GATTGTAGTTACATCGCTTGATCTGAATCTTGTTAATTTAATTACTTcca
gtttaaaattttttcggaattccgaaattttatgatttttctgaATTCcg
aaattttatgattttacgAAA Run BLAST on NCBI transcript from alignment at sc0002341:15661..16590+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040174 ID=TCONS_00040174|Name=TCONS_00040174|organism=Clytia hemisphaerica|type=transcript|length=930bp|location=Sequence derived from alignment at sc0002341:15661..16590+ (Clytia hemisphaerica)
AGTTGCTGAAATACTGAATGTGTAAAAAGTATAAGCAAAAGAAGATATGA
TATCAGAGCGGGTAAGAGCGCCAGCATGTTTAGAAAGTCTGCTCTCGTGG
GTTCAGCCTTTAATGACAGCCAAGGTGAGAACTGTGTTTTTATCGAAGAA
AACATGCATTCAATCGCAGTTCCATCTCCTCGTGCTTCGACTTCGACTGA
ATTACTGTCCTACCATCAAGAAACGAAATAATAACAAACACCAGAGATGG
TAAACCGATGACGAACAGAATGACTGCCGTAAGTTTCCTCGTCATACTGC
TCTtatatttagtaattttaaaagaattcaGAATGTAGCGCAAACAGCAA
ATGCTGGAAGTTTTAAAACAGAATGCCAGTAGAGCCAGTAGATACAATAT
TTTGAGAGCTTTTTGACTGCACACAAAACTTTTGAATGAAGGATGTGAAA
CTGTACAAGTGACACAATTAtctctttcttttttaaggtAAATTTTGGGA
CTTGCGCACATTCACAGCTGAATAGCGCTGACAAAATTGTGTTATAAAAG
CAGCGTCTGAACGAGTATTGAAGACAGTGCTGACTTATGTGAATTATTGG
AAAGATTTCAATGAACAGGTCATACATAGGGAAGATCAATAAGTTTTTGC
TATGACAAATGGTGAATACTACCGAAAGCAAATTACAGGATTTAAGAAAA
TAATACACGAAGAATACAAAGAgactcaaccaagtacaacgaCCTTTGCA
TCACATCTGACAATACTTTGTAAATACCCTGACTATCAGCAGTTATATAA
TTGGTATTTGATTGTAGTTACATCGCTTGATCTGAATCTTGTTAATTTAA
TTACTTccagtttaaaattttttcggaattccgaaattttatgatttttc
tgaATTCcgaaattttatgattttacgAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040174-exon-sc0002341-1491911889:15661..15938 | TCONS_00040174-exon-sc0002341-1491911889:15661..15938 | Clytia hemisphaerica | exon |
| TCONS_00040174-exon-sc0002341-1510915933:15661..15938 | TCONS_00040174-exon-sc0002341-1510915933:15661..15938 | Clytia hemisphaerica | exon |
| TCONS_00040174-exon-sc0002341-1575043694:15661..15938 | TCONS_00040174-exon-sc0002341-1575043694:15661..15938 | Clytia hemisphaerica | exon |
| TCONS_00040174-exon-sc0002341-1491911889:16148..16590 | TCONS_00040174-exon-sc0002341-1491911889:16148..16590 | Clytia hemisphaerica | exon |
| TCONS_00040174-exon-sc0002341-1510915933:16148..16590 | TCONS_00040174-exon-sc0002341-1510915933:16148..16590 | Clytia hemisphaerica | exon |
| TCONS_00040174-exon-sc0002341-1575043694:16148..16590 | TCONS_00040174-exon-sc0002341-1575043694:16148..16590 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002341 | supercontig | sc0002341:15661..16590 + |
Blast
The following BLAST results are available for this feature:
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