TCONS_00040173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040173
Unique NameTCONS_00040173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040173 ID=TCONS_00040173|Name=TCONS_00040173|organism=Clytia hemisphaerica|type=transcript|length=356bp
GTTGAGATGTACGATATCAAAGTGTATATTTTTCTTAGAAATATGATAAA
AAGTGTATAATATAGGGTGGTTTCttacaaataaaataaagatatgTTGC
AGTAAAAGGCAAAAATAGGGGATGTTTTTAAATACTATAAATGTTTACGA
TAATATTGTTGTCTATAaacttcttataaaagaaaataaattgtaGCTCT
GCTTTgattattttctccaaaaacaCGAAGGTTTGTTTTCATAGGAAATC
TATGAAAGCTGAAATCAGGCGATATAGTAGGAAGGTTAATCCTTGAGGAC
GCAGAGAAAGATAAGATTCAAATTAGCTAGTTTTGATCATTAAATCATGA
TGCAAT
Run BLAST on NCBI

transcript from alignment at sc0002340:17095..17450

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040173 ID=TCONS_00040173|Name=TCONS_00040173|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at sc0002340:17095..17450 (Clytia hemisphaerica)
ATTGCATCATGATTTAATGATCAAAACTAGCTAATTTGAATCTTATCTTT
CTCTGCGTCCTCAAGGATTAACCTTCCTACTATATCGCCTGATTTCAGCT
TTCATAGATTTCCTATGAAAACAAACCTTCGtgtttttggagaaaataat
cAAAGCAGAGCtacaatttattttcttttataagaagttTATAGACAACA
ATATTATCGTAAACATTTATAGTATTTAAAAACATCCCCTATTTTTGCCT
TTTACTGCAAcatatctttattttatttgtaaGAAACCACCCTATATTAT
ACACTTTTTATCATATTTCTAAGAAAAATATACACTTTGATATCGTACAT
CTCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024375XLOC_024375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040173-exon-sc0002340-1491911889:17095..17450TCONS_00040173-exon-sc0002340-1491911889:17095..17450Clytia hemisphaericaexon
TCONS_00040173-exon-sc0002340-1510915933:17095..17450TCONS_00040173-exon-sc0002340-1510915933:17095..17450Clytia hemisphaericaexon
TCONS_00040173-exon-sc0002340-1575043694:17095..17450TCONS_00040173-exon-sc0002340-1575043694:17095..17450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002340supercontigsc0002340:17095..17450 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.17211	3.05954	1.91284	0.802036	18.5516	7.45847	10.5498	15.9768	12.406	12.3438	5.86836	8.8404	13.1619	12.0018	4.3854	2.94138	5.61648	4.64251	9.23599	9.93326	10.7339	10.9265	12.1757	10.8179	0.777364	3.23764	11.2517	8.47631	19.2869	18.2857
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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