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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040169 ID=TCONS_00040169|Name=TCONS_00040169|organism=Clytia hemisphaerica|type=transcript|length=1847bp
GCACAAAGTCTTTGAGGAAACATGCAAGTTCATCCCCAAACTTCTTCTTC
TTGTTTCCAAGGCAGGAGTCGAAGCGCCTGGTGTTGAAGTTGTAAATGTA
AAGAGCGCGAAagcttaaaaaatagaaaagaggGTGCAAGGAGCAAACAT
GGCACGGATAGGAGTGAGAGGACAGAAAAACAGAACACAACACGGACAGC
TGCGGACAGACAGGACAGACACACGGAAATTTCCTCTTGAAAGGCCCCTT
CGCAAGCGCGCTGAGCCAAAAACTAATGAGTTCTACAATATAATTAACAA
ATCGGAGAGGTGAAATTAAGaagtttcattttaaattttcgtcTTTCACA
AATATCATCTTTCATTATTTCAATAAGATCATCCAttgattcaaatattt
tcattttcacagcATTGATACAACATCAATGAAATGTTTTAAtctaattt
ttgtattttacaaatatcttcgttCATCATTTCTATAAGATCATCCATTG
attcaaatgttttcattttcacagcATTGACACAAAATAGGGGGTTCAAA
GATGCAAATCGGTAATGTTTGATGTTAGGTTCTGAAAGTAATTTAACAAT
CTTCATCGCTTGGTCTCCAGTCCTCATCTTGGATATGGAGAGAAACAGCA
TCACTATCTATTGGTTTTCTAACATTCGTCATCAAATCAGGGCCAAACAt
ttcatttatcatttttttaacaaaatgtgAATAACTGTCAAATGGCGTGA
TGATGATCCTCAACggttgtttctttttaatttcacgTAAAGCGTTCACT
TTTTTAAATAAGGCAACAAAATATGGAAAATAAACATCCTGAGGGAAGTG
TGTGTAGATATTGATCATATTTATTCCAGTCATGCAAGTTTCATTAAACA
GGGCATCTCTTGAAAGAAGGTATTGGTGCATGTATTCATATCGGTCGAAA
TCTGGCTCTTTTATCACATCAAGTAGATTTTTAAGCAAGATATTCTTTGT
CTCTACAGTATACTTAAAATTATCGGGAAGAAAAAATGAGAATAAAAACC
GATTGATCGGCAACCAATTTGGAAGATCACAGAAACTTTGACAGTAAAGA
ATGATATTCCAAAACTGATCATCTTGAAGTCCTTGCAACATTTGAAACTC
TTCTTCAGAATCATAATCTGCATATGAATAGACCAATGTTTGTTTGACAG
TGTTGTTCCCCATCACTTGTTCATAATAAAGACGCTTCAAGAAACTTTTC
AAATCGTTGTAAGGAATACCCTTTGAAACAGAGCGGTTTGTTAGAGGGAA
ATTCCATTCGAATTGATTGACATTGAAGTTTGGCCGCCATTGGACAACAA
ATCTATCACTCGGGAGGTATACATTGATGGTGAAGCAATCTTCGTTCCGT
GTCAAAGGCTCTAAACGATGCAAGAGGTCATCCAAAAATTTCATTTCAAT
CCACTCTGCAATAATGGTTATATTATTTGTTTGTGGGCAAGCCAACATCT
CCAATTCTTGAAACTGGAACCCATCAGTTTTGCAATGGAATATCAGTATG
AAGAGAAAAGAAGTCACCAAAAAGGAGATACGGACCATTTTGTAAATACT
CGAAAAGAATTTCTGTTGTTGCAAAAAATAATGAATGAATGAATTCAATG
CTCATCTTGCAAGAATTTATGTGTACCAATTTTTAGGAAAGTCCCTTCAG
AAAGTGTTTTGAAAGAAATGATAGACCAGTTACTTACTCATTACCAAAAA
GATAATGTCATTCTATCTTACACAATCAAAAAATTAATTATATTGCATTG
CTTgagaaaggttaaagatgtTTAAATGTTAGAACCACACAAGAGAG Run BLAST on NCBI transcript from alignment at sc0002338:18877..20898+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040169 ID=TCONS_00040169|Name=TCONS_00040169|organism=Clytia hemisphaerica|type=transcript|length=2022bp|location=Sequence derived from alignment at sc0002338:18877..20898+ (Clytia hemisphaerica)
GCACAAAGTCTTTGAGGAAACATGCAAGTTCATCCCCAAACTTCTTCTTC
TTGTTTCCAAGGCAGGAGTCGAAGCGCCTGGTGTTGAAGTTGTAAATGTA
AAGAGCGCGAAagcttaaaaaatagaaaagaggGTGCAAGGAGCAAACAT
GGCACGGATAGGAGTGAGAGGACAGAAAAACAGAACACAACACGGACAGC
TGCGGACAGACAGGACAGACACACGGAAATTTCCTCTTGAAAGGCCCCTT
CGCAAGCGCGCTGAGCCAAAAACTAATGAGTTCTACAATATAATTAACAA
ATCGGAGAGGTGAAATTAAGaagtttcattttaaattttcgtcTTTCACA
AATATCATCTTTCATTATTTCAATAAGATCATCCAttgattcaaatattt
tcattttcacagcATTGATACAACATCgctaaaatgttttaattttgaat
tttcgaaGGTTTTCATTTCTAACAACATTGATACAACATCAATGAAATGT
TTTAATCTAATTTTCATCTTTTACAAATATCTTCTTTTATCATTTCTATA
AGATCGTTaaaattttcgaatgttttcattttcacaacATTGATACAACA
TTAATGAAATGTTTTAAtctaatttttgtattttacaaatatcttcgttC
ATCATTTCTATAAGATCATCCATTGattcaaatgttttcattttcacagc
ATTGACACAAAATAGGGGGTTCAAAGATGCAAATCGGTAATGTTTGATGT
TAGGTTCTGAAAGTAATTTAACAATCTTCATCGCTTGGTCTCCAGTCCTC
ATCTTGGATATGGAGAGAAACAGCATCACTATCTATTGGTTTTCTAACAT
TCGTCATCAAATCAGGGCCAAACAtttcatttatcatttttttaacaaaa
tgtgAATAACTGTCAAATGGCGTGATGATGATCCTCAACggttgtttctt
tttaatttcacgTAAAGCGTTCACTTTTTTAAATAAGGCAACAAAATATG
GAAAATAAACATCCTGAGGGAAGTGTGTGTAGATATTGATCATATTTATT
CCAGTCATGCAAGTTTCATTAAACAGGGCATCTCTTGAAAGAAGGTATTG
GTGCATGTATTCATATCGGTCGAAATCTGGCTCTTTTATCACATCAAGTA
GATTTTTAAGCAAGATATTCTTTGTCTCTACAGTATACTTAAAATTATCG
GGAAGAAAAAATGAGAATAAAAACCGATTGATCGGCAACCAATTTGGAAG
ATCACAGAAACTTTGACAGTAAAGAATGATATTCCAAAACTGATCATCTT
GAAGTCCTTGCAACATTTGAAACTCTTCTTCAGAATCATAATCTGCATAT
GAATAGACCAATGTTTGTTTGACAGTGTTGTTCCCCATCACTTGTTCATA
ATAAAGACGCTTCAAGAAACTTTTCAAATCGTTGTAAGGAATACCCTTTG
AAACAGAGCGGTTTGTTAGAGGGAAATTCCATTCGAATTGATTGACATTG
AAGTTTGGCCGCCATTGGACAACAAATCTATCACTCGGGAGGTATACATT
GATGGTGAAGCAATCTTCGTTCCGTGTCAAAGGCTCTAAACGATGCAAGA
GGTCATCCAAAAATTTCATTTCAATCCACTCTGCAATAATGGTTATATTA
TTTGTTTGTGGGCAAGCCAACATCTCCAATTCTTGAAACTGGAACCCATC
AGTTTTGCAATGGAATATCAGTATGAAGAGAAAAGAAGTCACCAAAAAGG
AGATACGGACCATTTTGTAAATACTCGAAAAGAATTTCTGTTGTTGCAAA
AAATAATGAATGAATGAATTCAATGCTCATCTTGCAAGAATTTATGTGTA
CCAATTTTTAGGAAAGTCCCTTCAGAAAGTGTTTTGAAAGAAATGATAGA
CCAGTTACTTACTCATTACCAAAAAGATAATGTCATTCTATCTTACACAA
TCAAAAAATTAATTATATTGCATTGCTTgagaaaggttaaagatgtTTAA
ATGTTAGAACCACACAAGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040169-exon-sc0002338-1491911889:18877..19289 | TCONS_00040169-exon-sc0002338-1491911889:18877..19289 | Clytia hemisphaerica | exon |
| TCONS_00040169-exon-sc0002338-1510915933:18877..19289 | TCONS_00040169-exon-sc0002338-1510915933:18877..19289 | Clytia hemisphaerica | exon |
| TCONS_00040169-exon-sc0002338-1575043694:18877..19289 | TCONS_00040169-exon-sc0002338-1575043694:18877..19289 | Clytia hemisphaerica | exon |
| TCONS_00040169-exon-sc0002338-1491911889:19353..19374 | TCONS_00040169-exon-sc0002338-1491911889:19353..19374 | Clytia hemisphaerica | exon |
| TCONS_00040169-exon-sc0002338-1510915933:19353..19374 | TCONS_00040169-exon-sc0002338-1510915933:19353..19374 | Clytia hemisphaerica | exon |
| TCONS_00040169-exon-sc0002338-1575043694:19353..19374 | TCONS_00040169-exon-sc0002338-1575043694:19353..19374 | Clytia hemisphaerica | exon |
| TCONS_00040169-exon-sc0002338-1491911889:19487..20898 | TCONS_00040169-exon-sc0002338-1491911889:19487..20898 | Clytia hemisphaerica | exon |
| TCONS_00040169-exon-sc0002338-1510915933:19487..20898 | TCONS_00040169-exon-sc0002338-1510915933:19487..20898 | Clytia hemisphaerica | exon |
| TCONS_00040169-exon-sc0002338-1575043694:19487..20898 | TCONS_00040169-exon-sc0002338-1575043694:19487..20898 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002338 | supercontig | sc0002338:18877..20898 + |
Blast
The following BLAST results are available for this feature:
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