TCONS_00040167 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040167
Unique NameTCONS_00040167
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040167 ID=TCONS_00040167|Name=TCONS_00040167|organism=Clytia hemisphaerica|type=transcript|length=312bp
CAAGAGCAAAATCTGCAGATGATtctaaaactttgaaaagaGACAATTCT
TTGGAAGAGGAGAGTCCAGAGGAAAAAGGCAAAATGAAAAACAGATTCAA
AAgtcttgcttcatttgcaactttaACAAAATGGTGGAAAAAGAATGTTg
attataaaagaaagaaaagggaAAAAATCGAAGAGCGTAAAATGAGGCTA
AAGTTACAATATCACTTTATGACAccatttgaaaaatacaaacttGGAAG
AAAACCATGGAAACTGGGAATCCAAATCTTAAAGATTTTGATAGTAACAA
CTCAGGTATTAA
Run BLAST on NCBI

protein sequence of TCONS_00040167-protein

>TCONS_00040167-protein ID=TCONS_00040167-protein|Name=TCONS_00040167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
RAKSADDSKTLKRDNSLEEESPEEKGKMKNRFKSLASFATLTKWWKKNVD
YKRKKREKIEERKMRLKLQYHFMTPFEKYKLGRKPWKLGIQILKILIVTT
QVL
Run BLAST on NCBI

transcript from alignment at sc0002337:1081..1392

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040167 ID=TCONS_00040167|Name=TCONS_00040167|organism=Clytia hemisphaerica|type=transcript|length=312bp|location=Sequence derived from alignment at sc0002337:1081..1392 (Clytia hemisphaerica)
TTAATACCTGAGTTGTTACTATCAAAATCTTTAAGATTTGGATTCCCAGT
TTCCATGGTTTTCTTCCaagtttgtatttttcaaatggTGTCATAAAGTG
ATATTGTAACTTTAGCCTCATTTTACGCTCTTCGATTTTTtcccttttct
ttcttttataatcAACATTCTTTTTCCACCATTTTGTtaaagttgcaaat
gaagcaagacTTTTGAATCTGTTTTTCATTTTGCCTTTTTCCTCTGGACT
CTCCTCTTCCAAAGAATTGTCtcttttcaaagttttagaATCATCTGCAG
ATTTTGCTCTTG

Coding sequence (CDS) from alignment at sc0002337:1081..1392

>TCONS_00040167 ID=TCONS_00040167|Name=TCONS_00040167|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0002337:1081..1392 (Clytia hemisphaerica)
TAATACCTGAGTTGTTACTATCAAAATCTTTAAGATTTGGATTCCCAGTT
TCCATGGTTTTCTTCCaagtttgtatttttcaaatggTGTCATAAAGTGA
TATTGTAACTTTAGCCTCATTTTACGCTCTTCGATTTTTtcccttttctt
tcttttataatcAACATTCTTTTTCCACCATTTTGTtaaagttgcaaatg
aagcaagacTTTTGAATCTGTTTTTCATTTTGCCTTTTTCCTCTGGACTC
TCCTCTTCCAAAGAATTGTCtcttttcaaagttttagaATCATCTGCAGA
TTTTGCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024369XLOC_024369Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040167-proteinTCONS_00040167-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040167-exon-sc0002337-1491911889:1081..1392TCONS_00040167-exon-sc0002337-1491911889:1081..1392Clytia hemisphaericaexon
TCONS_00040167-exon-sc0002337-1510915933:1081..1392TCONS_00040167-exon-sc0002337-1510915933:1081..1392Clytia hemisphaericaexon
TCONS_00040167-exon-sc0002337-1575043694:1081..1392TCONS_00040167-exon-sc0002337-1575043694:1081..1392Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002337supercontigsc0002337:1081..1392 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.20621	6.49758	1.25957	1.71039	10.8596	4.74834	8.04243	7.37861	5.1039	4.83251	9.85379	4.43693	1.41296	0.981145	5.27017	9.46422	3.86998	4.22616	3.90063	1.88093	5.11889	11.693	5.9099	6.24805	10.7344	17.9016	5.90037	3.6197	11.8516	10.8291
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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