TCONS_00040166 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040166
Unique NameTCONS_00040166
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040166 ID=TCONS_00040166|Name=TCONS_00040166|organism=Clytia hemisphaerica|type=transcript|length=369bp
AAAATCACGGATAATCATTGATTTAAGACTCTTGCGAAATTAATGATTAT
CGTTGATTTAACGGTGATAACGGGTTGTTTAATCGCCTTCTTTCCACTAA
CACTAGTTAACCTCTTTGCTCTGTGAGTCCACCCACAGTTTTTTCTTGGA
AGGGAGCTTTTGAGATCTCAATCGAACTACAATTCTTGATTAAGCTTGAT
TGGCTTTTTGAGCGTGCTAGTATTAAAATTTTTCCTGTCAACAGCTGTCA
GATGTGTTGTATGCGTTTTTTGCTAGTAGAATACAATCTGATTGGGCTTG
AGAAAACACATCACTGACTGCATTGGATTCTCTGCTCTAGTCGATTATAA
AAGACGCCCATATTCTTNN
Run BLAST on NCBI

transcript from alignment at sc0002337:14138..14552-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040166 ID=TCONS_00040166|Name=TCONS_00040166|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at sc0002337:14138..14552- (Clytia hemisphaerica)
AAAATCACGGATAATCATTGATTTAAGACTCTTGCGAAATTAATGATTAT
CGTTGATTTAACGGTGATAACGGGTTGTTTAATCGCCTTCTTTCCACTAA
CACTAGTTAACCTCTTTGCTCTGTGAGTCCACCCACAGTTTTTTCTTGGA
AGTTGTATGTTTTAGGATTTCAGGTTGAAATTCAGCTTTTCCTCCAGGGG
AGCTTTTGAGATCTCAATCGAACTACAATTCTTGATTAAGCTTGATTGGC
TTTTTGAGCGTGCTAGTATTAAAATTTTTCCTGTCAACAGCTGTCAGATG
TGTTGTATGCGTTTTTTGCTAGTAGAATACAATCTGATTGGGCTTGAGAA
AACACATCACTGACTGCATTGGATTCTCTGCTCTAGTCGATTATAAAAGA
CGCCCATATTCTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024368XLOC_024368Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040166-exon-sc0002337-1575043694:14402..14552TCONS_00040166-exon-sc0002337-1575043694:14402..14552Clytia hemisphaericaexon
TCONS_00040166-exon-sc0002337-1575043694:14138..14355TCONS_00040166-exon-sc0002337-1575043694:14138..14355Clytia hemisphaericaexon
TCONS_00040166-exon-sc0002337-1510915933:14402..14552TCONS_00040166-exon-sc0002337-1510915933:14402..14552Clytia hemisphaericaexon
TCONS_00040166-exon-sc0002337-1510915933:14138..14355TCONS_00040166-exon-sc0002337-1510915933:14138..14355Clytia hemisphaericaexon
TCONS_00040166-exon-sc0002337-1491911889:14402..14552TCONS_00040166-exon-sc0002337-1491911889:14402..14552Clytia hemisphaericaexon
TCONS_00040166-exon-sc0002337-1491911889:14138..14355TCONS_00040166-exon-sc0002337-1491911889:14138..14355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002337supercontigsc0002337:14138..14552 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
59.7988	58.8177	24.5185	11.2397	5.08243	4.41461	2.48901	0	5.80415	8.11729	3.86058	5.13622	0.422234	2.16231	1.5109	0.793132	3.42952	0.471312	2.82437	0.871868	1.53019	0.407334	130.075	90.7171	0	1.08436	3.4264	5.42706	91.3756	88.8157
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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