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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040165 ID=TCONS_00040165|Name=TCONS_00040165|organism=Clytia hemisphaerica|type=transcript|length=665bp
NNAAGAATATGGGCGTCTTTTATAATCGACTAGAGCAGAGAATCCAATGC
AGTCAGTGATGTGTTTTCTCAAGCCCAATCAGATTGTATTCTACTAGCAA
AAAACGCATACAACACATCTGACAGCTGTTGACAGGAAAAATTTTAATAC
TAGCACGCTCAAAAAGCCAATCAAGCTTAATCAAGAATTGTAGTTCGATT
GAGATCTCAAAAGCTCCCCTGGAGGAAAAGCTGAATTTCAACCTGAAATC
CTAAAACATACAACTTCCAAGAAAAAACTGTGGGTGGACTCACAGAGCAA
AGAGGTTAACTAGTGTTAGTGGAAAGAAGGCGATTAAACAACCCGTTATC
ACCGTTAAATCAACGATAATCATTAATTTCGCAAGAGTCTTAAATCAATG
ATTATCCGTGATTTTAAGTGCCGTGTCCGCCGCCTTGCGCTCGCTCCTCT
TCATTTAGTTTGCGCTTTAATAATGGTATCCTAGTTGCGTAAACTTCCCC
TGTATTCTGCTCATACTTCATTCAGTGCCAATCAACTGTGCTCTTATATC
CAAATTGACAAACACACATTGCTAGTTATCTCGTTATGGATTCTAATAAG
caagaaaaagGAACAACTAACAAGAGAACCTTGAAAGAAAACCAACCATC
ATCAGTTAAAGatAG Run BLAST on NCBI transcript from alignment at sc0002337:14138..17443+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040165 ID=TCONS_00040165|Name=TCONS_00040165|organism=Clytia hemisphaerica|type=transcript|length=3306bp|location=Sequence derived from alignment at sc0002337:14138..17443+ (Clytia hemisphaerica)
NNAAGAATATGGGCGTCTTTTATAATCGACTAGAGCAGAGAATCCAATGC
AGTCAGTGATGTGTTTTCTCAAGCCCAATCAGATTGTATTCTACTAGCAA
AAAACGCATACAACACATCTGACAGCTGTTGACAGGAAAAATTTTAATAC
TAGCACGCTCAAAAAGCCAATCAAGCTTAATCAAGAATTGTAGTTCGATT
GAGATCTCAAAAGCTCCCCTGGAGGAAAAGCTGAATTTCAACCTGAAATC
CTAAAACATACAACTTCCAAGAAAAAACTGTGGGTGGACTCACAGAGCAA
AGAGGTTAACTAGTGTTAGTGGAAAGAAGGCGATTAAACAACCCGTTATC
ACCGTTAAATCAACGATAATCATTAATTTCGCAAGAGTCTTAAATCAATG
ATTATCCGTGATTTTAAGTGCCGTGTCCGCCGCCTTGCGCTCGCTCCTCT
TCATTTAGTTTGCGCTTTAATAATGGTATCCTAGTTGCGTAAACTTCCCC
TGTATTCTGCTCATACTTCATTCAGTGCCAATCAACTGTGCTCTTATATC
CAAATTGACAAACACACATTGCTAGTTATCTCGTTATGGATTCTAATAAG
caagaaaaaggtttgtttaatttatttttttcaaatttcatcacAGAAGG
ATCATCAATCAGTGGGTAATCATCTGATCTGACATCTGGATCTGATATCA
TCCACAATCGATATAATAATATGGATCAGCTTTAGCTAGTGCTAGTGCGC
TAGTTAGTAGGATGATATGGATCGGTCATTATGATATGGAGATCATTGTT
GTAGGTCGATTGATCATCGTTAGGTTGATGGATCAATAGGTCGACAAATT
GGTTGGTTGACGTGTATTGCTTagttccagacgatctcaatcgaacgtat
cgacgatcaaaccagtcgaaccaaatcaagcgcaatcgactgattgaaat
tcgattgtcgaacgcaatcgaatctcaatcgaacgtcaaaattctgggta
atactcgattggttcgattgttgttcgactagttcgatcgtcgattccgt
tcgattgagatcgtctggctttattcttgcagcttcccaacatccaagct
ctcaaacatctcAAGCCCAATAAAATTACTTTCGTTTcctgtagaaatta
tgcgaaaaattgaaaattgcggtaatattcgattgagattcgattgcgtt
cgacaatcgaatttcaatcggttgattgcgttcgatttggttcgactggt
tcgatcgtcgattccattCTATTGAGATCGCCTGGTTAGTTGGCTGGCAG
GCCAATGGATTGGTTGGTTAAGGGATTGGTAGTCAATGGATTGGGTATAG
GTCGGCGGATTGGTTAGTTGATNTTGGTTGGTTAAGGGATTGGTAGTCAA
TGGATTGGGTATAGGTCGGCGGATTGGTTGGTTGATGAATTTAGTAGGTC
AACGAAGAAGGTAGATCGACTAATTGTTTTTGGTTGACAAATTCTCAATG
GATTGGTAGGTATATGGGTTTGTTAGTTGATGGATTGGTAGGTCAGCAGA
TTGGTAGGCCAATGGATTGTTTGGATTGATGGGTCGGCTGGGGATTGATG
GTTGCTCAATGAATCGGTGGGTGGGATGGATGAATTGATTGGTCAACGAG
TTGGTAGGTCGATGGATTAGTAGGTCAACAGATTGGCTAGTGGATAGATC
ACTAGGTGGATAAATCGTGAGGTTGTTTGATCGTTAGTAGTGCGATAATC
AAAGCGCTAGACAAatgcccactgaaaattgaaactaggaatttatagAA
ATATTTCACTAAAGCATCaaacgtttttatttttttatataattatgaaa
ttaaagttttaattttttggaaatcataggaaaattaaagtaaatttaaa
atgattgagtgaatattgggcggacgggcgttttggaAGTATGCTTTGTC
ATACTTCTAAACAACTGAAACCATCCGGGGATAAGTAACATGANGACTTT
AACATTGGACACTTCGACGTTGGACAATTGACTGGGAGACTTTACAAAAC
ATTTTCGCTTGGAATGTAAGTTTTGAATTTCGAAGTAAGGAAATTTTAAA
ACGGTCGAAAGTTAATCGAGTACCCTTAATAAAAGATGAAGCTTTGAATG
AAGCTCAAATTGTTCACAATCTGTTCgtaaaacttttgataaaaaataac
ccTTGTGTAGAGTGGTTGGCAAACGATTTCTCCaactccaaccctgaccc
tgacCCTAACTNaattcatttgagggctatgctaTGTTAAATTTTGAGTA
CAAATGTAGATGATTCAATTAAATTGAGGAGTAACTTATacaaatttgaa
attcttttttaggttatttatgatatattttatatttgtcaGGAACAACT
AACAAGAGAACCTTGAAAGAAAACCAACCATCATCAGTTAAAGGTATACA
TCATTGTTTTTAATGTGATGTTCTTCTTCTTAAAATCTAACTATAAGCCG
ATATCGGAGAAATACAAGATTGTCTTGCTTTCCTATTCTTTTCCCTAAAA
TCCTTTAAGAATCTACAAGttacattttgtacattaaagAAGGGTATAAt
tagttttaaaaatcattttcaaaacattattGAGAGACCTTAATAAAAAT
GAATCAGGCTCTTTTTTGGAAGAACCTTTAGAGAAAATAGACATATTGAA
GGGGTTAAATTGCTGGTAAAATTTTGAAGAGAAGGACGAAAGGGTGAGTT
TTTTACATAATATTGAGAAGGTAGGTTACAAGTAAATACAGTAATTGAAT
AATTTACTTGTACAAATTACTGACCGATTATCAATCTAACTAACTAactg
acatgacatgacatcaATTACTAAAATCACGATTACTTTAACATTGGACA
CTTCGACGTTGGACAATTGACTGGGAGACTTTACAAAACATTTTCACTTG
GAAtgtaagttttgaatttcaaagtaAGGAAATTTTAAAACGGTCGAAAG
TTAATCGAGTACCCTTAATAAAAGATGAAGCTTTGAATGAAGCTCAAATT
GTTCACAATCTGTTCgtaaaacttttgataaaaaataacccTTGTGTAGA
GTGGTTGGCAAACGATTTCTCCaactccaaccctgaccctgaccctaact
gataataatgaAACTTCTGTCTACAGATCCACAGATTGCAAAATAGGCTT
GCATCCTGaggtatgatatcgtttgctgaCCGTGTATATCATGTGGCTAG
TTGAATCATATAGAAATAATGTTTACAGAAGGTTgctaattttacttttt
agatAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040165-exon-sc0002337-1491911889:14138..14747 | TCONS_00040165-exon-sc0002337-1491911889:14138..14747 | Clytia hemisphaerica | exon |
| TCONS_00040165-exon-sc0002337-1510915933:14138..14747 | TCONS_00040165-exon-sc0002337-1510915933:14138..14747 | Clytia hemisphaerica | exon |
| TCONS_00040165-exon-sc0002337-1575043694:14138..14747 | TCONS_00040165-exon-sc0002337-1575043694:14138..14747 | Clytia hemisphaerica | exon |
| TCONS_00040165-exon-sc0002337-1491911889:16530..16580 | TCONS_00040165-exon-sc0002337-1491911889:16530..16580 | Clytia hemisphaerica | exon |
| TCONS_00040165-exon-sc0002337-1510915933:16530..16580 | TCONS_00040165-exon-sc0002337-1510915933:16530..16580 | Clytia hemisphaerica | exon |
| TCONS_00040165-exon-sc0002337-1575043694:16530..16580 | TCONS_00040165-exon-sc0002337-1575043694:16530..16580 | Clytia hemisphaerica | exon |
| TCONS_00040165-exon-sc0002337-1491911889:17440..17443 | TCONS_00040165-exon-sc0002337-1491911889:17440..17443 | Clytia hemisphaerica | exon |
| TCONS_00040165-exon-sc0002337-1510915933:17440..17443 | TCONS_00040165-exon-sc0002337-1510915933:17440..17443 | Clytia hemisphaerica | exon |
| TCONS_00040165-exon-sc0002337-1575043694:17440..17443 | TCONS_00040165-exon-sc0002337-1575043694:17440..17443 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002337 | supercontig | sc0002337:14138..17443 + |
Blast
The following BLAST results are available for this feature:
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