TCONS_00040164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040164
Unique NameTCONS_00040164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040164 ID=TCONS_00040164|Name=TCONS_00040164|organism=Clytia hemisphaerica|type=transcript|length=614bp
AATGTTACTTACAGTTACTTTACTGTTACTTTCAATGTATCAGATTAATG
GAGTTTAGTTTTAAAATTTNtccctctgttgcgatttccACTGTAACCGC
ATGGCAGAATAACAAAGCCTGGCGGTTTTGTTTGCCTCTGGCATTGAAAT
TATGCAGGAAAAGTGGGTACATTATCGGAAGTAATTCCCTGATTATCGTT
CTGAATTTGGCTTTAAACAGAAGCTGATATACGGCGGTGCAGCCTTGCAA
ACTTGTCAAACGAAATTGATCAGACCGCATCCCATTGATTGAAATTATTA
Aaggaacactcacaatttttacaaatcttatgagtttgatgaattttttt
tatttgaactttaatcgttcgacaGAGTTTAATTAATACTCACTGTGATG
GCATTAAAGTGTATTAGACTTACCTTTTGAAGACATAAATGAAACTAACA
AGGCATAAATTATGTACTTATATGTCGCTAAATACATTCTCTTCAGATTT
GCTTTCTAACGTCCATATTTTAATTCTGAAAGTCAAAATAATATTCACTA
GGTTTTAATCTgcatttgatgaaaaaaattaattgtcCAATGTATGACCC
TTCAGTGTTATGTA
Run BLAST on NCBI

transcript from alignment at sc0002337:10752..11365+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040164 ID=TCONS_00040164|Name=TCONS_00040164|organism=Clytia hemisphaerica|type=transcript|length=614bp|location=Sequence derived from alignment at sc0002337:10752..11365+ (Clytia hemisphaerica)
AATGTTACTTACAGTTACTTTACTGTTACTTTCAATGTATCAGATTAATG
GAGTTTAGTTTTAAAATTTNtccctctgttgcgatttccACTGTAACCGC
ATGGCAGAATAACAAAGCCTGGCGGTTTTGTTTGCCTCTGGCATTGAAAT
TATGCAGGAAAAGTGGGTACATTATCGGAAGTAATTCCCTGATTATCGTT
CTGAATTTGGCTTTAAACAGAAGCTGATATACGGCGGTGCAGCCTTGCAA
ACTTGTCAAACGAAATTGATCAGACCGCATCCCATTGATTGAAATTATTA
Aaggaacactcacaatttttacaaatcttatgagtttgatgaattttttt
tatttgaactttaatcgttcgacaGAGTTTAATTAATACTCACTGTGATG
GCATTAAAGTGTATTAGACTTACCTTTTGAAGACATAAATGAAACTAACA
AGGCATAAATTATGTACTTATATGTCGCTAAATACATTCTCTTCAGATTT
GCTTTCTAACGTCCATATTTTAATTCTGAAAGTCAAAATAATATTCACTA
GGTTTTAATCTgcatttgatgaaaaaaattaattgtcCAATGTATGACCC
TTCAGTGTTATGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024366XLOC_024366Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040164-exon-sc0002337-1491911889:10752..11365TCONS_00040164-exon-sc0002337-1491911889:10752..11365Clytia hemisphaericaexon
TCONS_00040164-exon-sc0002337-1510915933:10752..11365TCONS_00040164-exon-sc0002337-1510915933:10752..11365Clytia hemisphaericaexon
TCONS_00040164-exon-sc0002337-1575043694:10752..11365TCONS_00040164-exon-sc0002337-1575043694:10752..11365Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002337supercontigsc0002337:10752..11365 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.07329	2.42036	1.98618	1.26029	0	0	0	0.210872	0	0	0	0.116681	0	0	0	0.114037	0	0	0	0.0974434	0	0.135007	0.316583	0	0	0.167878	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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