TCONS_00040158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040158
Unique NameTCONS_00040158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040158 ID=TCONS_00040158|Name=TCONS_00040158|organism=Clytia hemisphaerica|type=transcript|length=685bp
GTTTATTGAAGCTTTTCCCGATAAATGAGAAAAACACAGCATATCTCAAA
AGGGCTGAGGCTGCAGGTTTGACTAAGCTTACTAAAGAAGAAGCAATAGA
AGCAGCAAATGAGAAGGTCAAGGAGTTAGACAAGGAATTCAGACAGGACT
ATGTTTGTAGCTTCAAGGAGGCGGTTGGTTTAGATGGAATATCAAAAAGA
AAGGTTAAGAGAAAGATTCAAAGGGAGACAAAGAAAGATATAGAAGTTCA
ATGGAAGGAGACATCTATCTTGAGTGCTTTTGGTGGAACAACATCAATTA
AAACGCGAGAGAAAAATAGATCTACTGatggttttgaaagttttgatgaT
GCGGTTGCTAGAACGGCCAAAGATAATGAAAAGATAGCAAGAGGATTGAA
GAGAAAGCGTGATCATGTGGGGCATTTGGAGAATTATACATGTGATTGGG
ATAACTTATACGATAAGttttcctcGTTTCTTTTTGGGTCGATTTTAAAC
CTGACGCAACTGGCAAGAGACTTCAATCTCAAAAACTCGTCAGGCGAATA
TCCGTGTAATGGGGGACAAGTCGTTCGAAAATTCTTAGAGGAAGTACACC
ACATTGATTTAGGACAATACAAACTCGTCCATAGCGGAATACGCGTTcgt
aaagcaaaaaagagGATGACGAAATCAGATGTTCC
Run BLAST on NCBI

protein sequence of TCONS_00040158-protein

>TCONS_00040158-protein ID=TCONS_00040158-protein|Name=TCONS_00040158-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
LLKLFPINEKNTAYLKRAEAAGLTKLTKEEAIEAANEKVKELDKEFRQDY
VCSFKEAVGLDGISKRKVKRKIQRETKKDIEVQWKETSILSAFGGTTSIK
TREKNRSTDGFESFDDAVARTAKDNEKIARGLKRKRDHVGHLENYTCDWD
NLYDKFSSFLFGSILNLTQLARDFNLKNSSGEYPCNGGQVVRKFLEEVHH
IDLGQYKLVHSGIRVRKAKKRMTKSDV
Run BLAST on NCBI

transcript from alignment at sc0002331:3455..5673-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040158 ID=TCONS_00040158|Name=TCONS_00040158|organism=Clytia hemisphaerica|type=transcript|length=2219bp|location=Sequence derived from alignment at sc0002331:3455..5673- (Clytia hemisphaerica)
GTTTATTGAAGCTTTTCCCGATAAATGAGAAAAACACAGCATATCTCAAA
AGGGCTGAGGCTGCAGGTTTGACTAAGCTTACTAAAGAAGAAGCAATAGA
AGCAGCAAATGAGAAGGTCAAGGAGTTAGACAAGGAATTCAGACAGGACT
ATGTTTGTAGCTTCAAGGAGGCGGTTGGTTTAGATGGAATATCAAAAAGA
AAGGTTAAGAGAAAGATTCAAAGGGAGACAAAGAAAGATATAGAAGTTCA
ATGGAAGGAGACATCTATCTTGAGGTTTGGAAGCAGTTGTATATACCTTT
ACAAGCCAGAGCAGGGGGTCAACATTCAGGGTATTAAAGCATAGCTTGTG
GGATGCGGTTCATATTTGCAAATAATTAAAGTGACTGTAAGTAAGTAAAT
TTACTTATTGGGTGGTAACATCTTAATTAAATCTTTTTGATGGGTGGGTT
AACTTAACTAGAAAGCCAAAAGAATTAGGTGAGTACCTTTTTTGTTGAAG
AAAGTTATCTACTCTGGCTATCATCTAGTACCCTGAGATTTGACTTCCTG
GCAAGAGCCAATAAACAACAGTACAGTCTTAGATCCACTCGTTCTTGTCA
ACTCGTAGCTTGAAATTAACTTAAGGTTCCAGCTCTGTCTTGTTGGTTTA
TATTTATATATGATCTCTCTGTACTATGCGCAATTTTTTACATGTTTGTC
TAGATTAACACGAATTAGATTATANTATATATGATCTCTCTGTACTATGC
ACAATTTTTTACATGTTTGTCTAGATTAACACGAATTAGATTATAGGTAT
TTTAAAACATTAACAATCAACTCAGTTATCATTANATATGATCTCTCTGT
ACTATGCACAATTTTTTACATTTTTGTCTAGATTAACACGAATTAGATTA
TAGGTATTTTAAAACATTAACAATTAACTCAGTTAACATTGAAACATTAA
ATCAGATATGTTCTTTTGCACTAGAAACCATTGATCAAAGATTAGTTCAT
AACCAAAATAACTTTGAAGTTAACTTTATTTCATGCTCTCATTTAGTGCT
TTTGGTGGAACAACATCAATTAAAACGCGAGAGAAAAATAGATCTACTGA
TGGTTTTGAAAGTTTTGATGATGCGGTTGCTAGAACGGCCAAAGATAATG
AAAAGATAGCAAGAGGATTGAAGAGAAAGCGTGATCATGTGGGGCATTTG
GAGAATTATACATGTGATTGGGATAACTTATACGATAAGGTATTACTTAT
ATGATATGATATGATAAGATGTTACTCGAAGGTCCATAATGACTCCCCGG
CCCCAACCCTTTGTTAATTTTCAAGTTTTTCCCATCCCCCATACCAAACT
GTATGCAGCGGGATACCAAATCAAACCAAATATGGCTAATTTTGATTGTT
CAATTGTTTTACAAGTTTGTTTTGGACACGTGATTTTAATTGTTCTCTTT
AATGACACGTGGTTCACGCAATGTTTACATTTAACTACTTTAATGTCCCT
TCAACTCACTCAAAATACAGATCTTGCGAACAATTGACTGATACCCTCTC
TTTTTTTCTTTTTTTTAGTTTTCCTCGTTTCTTTTTGGGTCGATTTTAAA
CCTGACGCAACTGGCAAGAGACTTCAATCTCAAAAACTCGTCAGGTAGAG
ATTTTGATTGGTTATAATCATAAGTTTGACCTTTTTTGTTTCACTTTTGA
TGCTCGTTCGACTGGTACAAATTTATTAATTTGGTTACTAGGGTAACCAA
TGACCATTTTTGCAGTAGGCTAGGGCAAGCCTTTGATGTCATAATTCTTT
TTTAAATCTCTGTATGGAATCTTATGCTCAAATTAAATTTATAATTCTCA
TTTATGTAGGCGAATATCCGTGTAATGGGGGACAAGTCGTTCGAAAATTC
TTAGAGGAAGTACACCACATTGATTTAGGACAATACAAACTCGTCCATAG
CGGAATACGCGTTCGTAAAGCAAAAAAGAGGTTTTAAAACTAACATTTTA
CTTCATTTTTAATTGGTCTAACGTGGGCTTTTGTTTTTAATATGTCTCAC
TAATTTTCTCAGAGTTTCTGTTGTTAATCTAAATTTACTTCATTTTATAA
TTTTCTTGCAGTATATATTTCCTACTTATATTGTACAGAAGCCTAACTCT
TTCCCAGTCAAGACAGGTATACTTACCGTTATCGTGTTGTTGTTTTAGGA
TGACGAAATCAGATGTTCC

Coding sequence (CDS) from alignment at sc0002331:3455..5673-

>TCONS_00040158 ID=TCONS_00040158|Name=TCONS_00040158|organism=Clytia hemisphaerica|type=CDS|length=3405bp|location=Sequence derived from alignment at sc0002331:3455..5673- (Clytia hemisphaerica)
GATGACGAAATCAGATGTTGCGAATATCCGTGTAATGGGGGACAAGTCGT
TCGAAAATTCTTAGAGGAAGTACACCACATTGATTTAGGACAATACAAAC
TCGTCCATAGCGGAATACGCGTTCGTAAAGCAAAAAAGAGTTTTCCTCGT
TTCTTTTTGGGTCGATTTTAAACCTGACGCAACTGGCAAGAGACTTCAAT
CTCAAAAACTCGTCAGTGCTTTTGGTGGAACAACATCAATTAAAACGCGA
GAGAAAAATAGATCTACTGATGGTTTTGAAAGTTTTGATGATGCGGTTGC
TAGAACGGCCAAAGATAATGAAAAGATAGCAAGAGGATTGAAGAGAAAGC
GTGATCATGTGGGGCATTTGGAGAATTATACATGTGATTGGGATAACTTA
TACGATAAGTTATTGAAGCTTTTCCCGATAAATGAGAAAAACACAGCATA
TCTCAAAAGGGCTGAGGCTGCAGGTTTGACTAAGCTTACTAAAGAAGAAG
CAATAGAAGCAGCAAATGAGAAGGTCAAGGAGTTAGACAAGGAATTCAGA
CAGGACTATGTTTGTAGCTTCAAGGAGGCGGTTGGTTTAGATGGAATATC
AAAAAGAAAGGTTAAGAGAAAGATTCAAAGGGAGACAAAGAAAGATATAG
AAGTTCAATGGAAGGAGACATCTATCTTGAGGATGACGAAATCAGATGTT
GCGAATATCCGTGTAATGGGGGACAAGTCGTTCGAAAATTCTTAGAGGAA
GTACACCACATTGATTTAGGACAATACAAACTCGTCCATAGCGGAATACG
CGTTCGTAAAGCAAAAAAGAGTTTTCCTCGTTTCTTTTTGGGTCGATTTT
AAACCTGACGCAACTGGCAAGAGACTTCAATCTCAAAAACTCGTCAGTGC
TTTTGGTGGAACAACATCAATTAAAACGCGAGAGAAAAATAGATCTACTG
ATGGTTTTGAAAGTTTTGATGATGCGGTTGCTAGAACGGCCAAAGATAAT
GAAAAGATAGCAAGAGGATTGAAGAGAAAGCGTGATCATGTGGGGCATTT
GGAGAATTATACATGTGATTGGGATAACTTATACGATAAGTTATTGAAGC
TTTTCCCGATAAATGAGAAAAACACAGCATATCTCAAAAGGGCTGAGGCT
GCAGGTTTGACTAAGCTTACTAAAGAAGAAGCAATAGAAGCAGCAAATGA
GAAGGTCAAGGAGTTAGACAAGGAATTCAGACAGGACTATGTTTGTAGCT
TCAAGGAGGCGGTTGGTTTAGATGGAATATCAAAAAGAAAGGTTAAGAGA
AAGATTCAAAGGGAGACAAAGAAAGATATAGAAGTTCAATGGAAGGAGAC
ATCTATCTTGAGGATGACGAAATCAGATGTTGCGAATATCCGTGTAATGG
GGGACAAGTCGTTCGAAAATTCTTAGAGGAAGTACACCACATTGATTTAG
GACAATACAAACTCGTCCATAGCGGAATACGCGTTCGTAAAGCAAAAAAG
AGTTTTCCTCGTTTCTTTTTGGGTCGATTTTAAACCTGACGCAACTGGCA
AGAGACTTCAATCTCAAAAACTCGTCAGTGCTTTTGGTGGAACAACATCA
ATTAAAACGCGAGAGAAAAATAGATCTACTGATGGTTTTGAAAGTTTTGA
TGATGCGGTTGCTAGAACGGCCAAAGATAATGAAAAGATAGCAAGAGGAT
TGAAGAGAAAGCGTGATCATGTGGGGCATTTGGAGAATTATACATGTGAT
TGGGATAACTTATACGATAAGTTATTGAAGCTTTTCCCGATAAATGAGAA
AAACACAGCATATCTCAAAAGGGCTGAGGCTGCAGGTTTGACTAAGCTTA
CTAAAGAAGAAGCAATAGAAGCAGCAAATGAGAAGGTCAAGGAGTTAGAC
AAGGAATTCAGACAGGACTATGTTTGTAGCTTCAAGGAGGCGGTTGGTTT
AGATGGAATATCAAAAAGAAAGGTTAAGAGAAAGATTCAAAGGGAGACAA
AGAAAGATATAGAAGTTCAATGGAAGGAGACATCTATCTTGAGGATGACG
AAATCAGATGTTGCGAATATCCGTGTAATGGGGGACAAGTCGTTCGAAAA
TTCTTAGAGGAAGTACACCACATTGATTTAGGACAATACAAACTCGTCCA
TAGCGGAATACGCGTTCGTAAAGCAAAAAAGAGTTTTCCTCGTTTCTTTT
TGGGTCGATTTTAAACCTGACGCAACTGGCAAGAGACTTCAATCTCAAAA
ACTCGTCAGTGCTTTTGGTGGAACAACATCAATTAAAACGCGAGAGAAAA
ATAGATCTACTGATGGTTTTGAAAGTTTTGATGATGCGGTTGCTAGAACG
GCCAAAGATAATGAAAAGATAGCAAGAGGATTGAAGAGAAAGCGTGATCA
TGTGGGGCATTTGGAGAATTATACATGTGATTGGGATAACTTATACGATA
AGTTATTGAAGCTTTTCCCGATAAATGAGAAAAACACAGCATATCTCAAA
AGGGCTGAGGCTGCAGGTTTGACTAAGCTTACTAAAGAAGAAGCAATAGA
AGCAGCAAATGAGAAGGTCAAGGAGTTAGACAAGGAATTCAGACAGGACT
ATGTTTGTAGCTTCAAGGAGGCGGTTGGTTTAGATGGAATATCAAAAAGA
AAGGTTAAGAGAAAGATTCAAAGGGAGACAAAGAAAGATATAGAAGTTCA
ATGGAAGGAGACATCTATCTTGAGGATGACGAAATCAGATGTTGCGAATA
TCCGTGTAATGGGGGACAAGTCGTTCGAAAATTCTTAGAGGAAGTACACC
ACATTGATTTAGGACAATACAAACTCGTCCATAGCGGAATACGCGTTCGT
AAAGCAAAAAAGAGTTTTCCTCGTTTCTTTTTGGGTCGATTTTAAACCTG
ACGCAACTGGCAAGAGACTTCAATCTCAAAAACTCGTCAGTGCTTTTGGT
GGAACAACATCAATTAAAACGCGAGAGAAAAATAGATCTACTGATGGTTT
TGAAAGTTTTGATGATGCGGTTGCTAGAACGGCCAAAGATAATGAAAAGA
TAGCAAGAGGATTGAAGAGAAAGCGTGATCATGTGGGGCATTTGGAGAAT
TATACATGTGATTGGGATAACTTATACGATAAGTTATTGAAGCTTTTCCC
GATAAATGAGAAAAACACAGCATATCTCAAAAGGGCTGAGGCTGCAGGTT
TGACTAAGCTTACTAAAGAAGAAGCAATAGAAGCAGCAAATGAGAAGGTC
AAGGAGTTAGACAAGGAATTCAGACAGGACTATGTTTGTAGCTTCAAGGA
GGCGGTTGGTTTAGATGGAATATCAAAAAGAAAGGTTAAGAGAAAGATTC
AAAGGGAGACAAAGAAAGATATAGAAGTTCAATGGAAGGAGACATCTATC
TTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024362XLOC_024362Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040158-exon-sc0002331-1575043694:5400..5673TCONS_00040158-exon-sc0002331-1575043694:5400..5673Clytia hemisphaericaexon
TCONS_00040158-exon-sc0002331-1575043694:4435..4627TCONS_00040158-exon-sc0002331-1575043694:4435..4627Clytia hemisphaericaexon
TCONS_00040158-exon-sc0002331-1575043694:4030..4105TCONS_00040158-exon-sc0002331-1575043694:4030..4105Clytia hemisphaericaexon
TCONS_00040158-exon-sc0002331-1575043694:3694..3814TCONS_00040158-exon-sc0002331-1575043694:3694..3814Clytia hemisphaericaexon
TCONS_00040158-exon-sc0002331-1575043694:3455..3475TCONS_00040158-exon-sc0002331-1575043694:3455..3475Clytia hemisphaericaexon
TCONS_00040158-exon-sc0002331-1510915933:5400..5673TCONS_00040158-exon-sc0002331-1510915933:5400..5673Clytia hemisphaericaexon
TCONS_00040158-exon-sc0002331-1510915933:4435..4627TCONS_00040158-exon-sc0002331-1510915933:4435..4627Clytia hemisphaericaexon
TCONS_00040158-exon-sc0002331-1510915933:4030..4105TCONS_00040158-exon-sc0002331-1510915933:4030..4105Clytia hemisphaericaexon
TCONS_00040158-exon-sc0002331-1510915933:3694..3814TCONS_00040158-exon-sc0002331-1510915933:3694..3814Clytia hemisphaericaexon
TCONS_00040158-exon-sc0002331-1510915933:3455..3475TCONS_00040158-exon-sc0002331-1510915933:3455..3475Clytia hemisphaericaexon
TCONS_00040158-exon-sc0002331-1491911889:5400..5673TCONS_00040158-exon-sc0002331-1491911889:5400..5673Clytia hemisphaericaexon
TCONS_00040158-exon-sc0002331-1491911889:4435..4627TCONS_00040158-exon-sc0002331-1491911889:4435..4627Clytia hemisphaericaexon
TCONS_00040158-exon-sc0002331-1491911889:4030..4105TCONS_00040158-exon-sc0002331-1491911889:4030..4105Clytia hemisphaericaexon
TCONS_00040158-exon-sc0002331-1491911889:3694..3814TCONS_00040158-exon-sc0002331-1491911889:3694..3814Clytia hemisphaericaexon
TCONS_00040158-exon-sc0002331-1491911889:3455..3475TCONS_00040158-exon-sc0002331-1491911889:3455..3475Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040158-proteinTCONS_00040158-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002331supercontigsc0002331:3455..5673 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0726815	0	0	0.342515	0.746656	1.05797	1.51059	0.139138	0.600023	0.280195	0.23859	0.0579327	0.581975	0.109809	0.325554	0	0.0144501	0	0	0	0.316347	0.0854582	0	1.12032	1.13709	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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