TCONS_00040156 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040156
Unique NameTCONS_00040156
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length929

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040156 ID=TCONS_00040156|Name=TCONS_00040156|organism=Clytia hemisphaerica|type=transcript|length=929bp
AATCTTTTcgaaaatacttacaaaatcaCTCAGCAGCGTATATCTTCTCT
TCTTTCAACAATCGAATTTATTTTGAGAAGTCCTTACACAACAGCACGAG
TTTTGTGTCGCCTAACAGGAAAAGTcgtttcaatgaaatttgttTTGTCA
AACATTATCAAATTAAAAACTAGATCTTTATACAAAGCCATTGATGAAGC
TGTCTCATGGGATGGGAAgtttaacattttcaattatccAGACGCTCACA
GAGAAATTCTTTTTTGGAGAGACAATGTAAATGTATTAAATAACAAAAGC
GTGTTAAAGTCCCAAGTGAAGTATACTATCTATTCTGACGCAAGTAGCAG
TGGGATAGGAGCTGTATTAAAAGAGAATTCAATTTTAAATGTGTGTCACA
AAATGTTTGATGTAGAGGAAATTGATAGAAGTTCAACTTGGAGGGAACTC
GAAGCGATCAGATTCGGATTGGATTCATTTTGCCATAAGTTAAGTAACTC
TTCCATATCTTGGATGACAGATAATAGAGCAGCCATGTATGTTTCTTCAG
GTGGTAGCAATAAGCCCCATTTACAAGAATTAGCACTAAGAATCTACGAA
TTGTCTCGTAACTTTAATATAAATGTGGAAGTGAATTGGGTTCCTAGGGA
CGAGAACCGAGTAGCGGACAGAGTTTCTAAAATAATAGATCCAGACGACT
GGGAAATCACAGAGGAATTTTTGCACTTTCTCGAACATCGTTGGGGTAAC
TTTACAGTCGTGAGATTCGCTAATTTTGACAATGCAAAATGCGAGAGGTT
TAATTCCAAGTATGTTGTGCCCGGTACAGAGGCTGTTGACGCCTTCACCC
AAGACTGGCGCTTAGAGCGAAATTTATTAGTTCCTCCTGTCAGCCAGATT
CCTCAAGTCTTACGCCTTTTAAAAAGCCA
Run BLAST on NCBI

protein sequence of TCONS_00040156-protein

>TCONS_00040156-protein ID=TCONS_00040156-protein|Name=TCONS_00040156-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
NLFENTYKITQQRISSLLSTIEFILRSPYTTARVLCRLTGKVVSMKFVLS
NIIKLKTRSLYKAIDEAVSWDGKFNIFNYPDAHREILFWRDNVNVLNNKS
VLKSQVKYTIYSDASSSGIGAVLKENSILNVCHKMFDVEEIDRSSTWREL
EAIRFGLDSFCHKLSNSSISWMTDNRAAMYVSSGGSNKPHLQELALRIYE
LSRNFNINVEVNWVPRDENRVADRVSKIIDPDDWEITEEFLHFLEHRWGN
FTVVRFANFDNAKCERFNSKYVVPGTEAVDAFTQDWRLERNLLVPPVSQI
PQVLRLLKS
Run BLAST on NCBI

transcript from alignment at sc0002331:24010..25027+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040156 ID=TCONS_00040156|Name=TCONS_00040156|organism=Clytia hemisphaerica|type=transcript|length=1018bp|location=Sequence derived from alignment at sc0002331:24010..25027+ (Clytia hemisphaerica)
AATCTTTTcgaaaatacttacaaaatcaCTCAGCAGCGTATATCTTCTCT
TCTTTCAACAATCGAATTTATTTTGAGAAGTCCTTACACAACAGCACGAG
TTTTGTGTCGCCTAACAGGAAAAGTcgtttcaatgaaatttgttTTGTCA
AACATTATCAAATTAAAAACTAGATCTTTATACAAAGCCATTGATGAAGC
TGTCTCATGGGATGGGAAgtttaacattttcaattatccAGACGCTCACA
GAGAAATTCTTTTTTGGAGAGACAATGTAAATGTATTAAATAACAAAAGC
GTGTTAAAGTCCCAAGTGAAGTATACTATCTATTCTGACGCAAGTAGCAG
TGGGATAGGAGCTGTATTAAAAGAGAATTCAATTTTAAATGTGTGTCACA
AAATGTTTGATGTAGAGGAAATTGATAGAAGTTCAACTTGGAGGGAACTC
GAAGCGATCAGATTCGGATTGGATTCATTTTGCCATAAGTTAAGTAACTC
TTCCATATCTTGGATGACAGATAATAGAGCAGCCATGTATGTTTCTTCAG
GTGGTAGCAATAAGCCCCATTTACAAGAATTAGCACTAAGAATCTACGAA
TTGTCTCGTAACTTTAATATAAATGTGGAAGTGAATTGGGTTCCTAGGGA
CGAGAACCGAGTAGCGGACAGAGTTTCTAAAATAATAGATCCAGACGACT
GGGAAATCACAGAGGAATTTTTGCACTTTCTCGAACATCGTTGGGGTAAC
TTTACAGTCGTGAGATTCGCTAATTTTGACAATGCAAAATGCGAGAGGTT
TAATTCCAAGTATGTTGTGCCCGGTACAGAGGCTGTTGACGCCTTCACCC
AAGACTGNACAGATTCGCTAATTTTGACAATGCAAAATGCGAGAGGTTTA
ATTCCAAGTATGTTGTGCCCGGTACAGAGGCCTTCACCCAAGACTGGCGC
TTAGAGCGAAATTTATTAGTTCCTCCTGTCAGCCAGATTCCTCAAGTCTT
ACGCCTTTTAAAAAGCCA

Coding sequence (CDS) from alignment at sc0002331:24010..25027+

>TCONS_00040156 ID=TCONS_00040156|Name=TCONS_00040156|organism=Clytia hemisphaerica|type=CDS|length=1854bp|location=Sequence derived from alignment at sc0002331:24010..25027+ (Clytia hemisphaerica)
AATCTTTTcgaaaatacttacaaaatcaCTCAGCAGCGTATATCTTCTCT
TCTTTCAACAATCGAATTTATTTTGAGAAGTCCTTACACAACAGCACGAG
TTTTGTGTCGCCTAACAGGAAAAGTcgtttcaatgaaatttgttTTGTCA
AACATTATCAAATTAAAAACTAGATCTTTATACAAAGCCATTGATGAAGC
TGTCTCATGGGATGGGAAgtttaacattttcaattatccAGACGCTCACA
GAGAAATTCTTTTTTGGAGAGACAATGTAAATGTATTAAATAACAAAAGC
GTGTTAAAGTCCCAAGTGAAGTATACTATCTATTCTGACGCAAGTAGCAG
TGGGATAGGAGCTGTATTAAAAGAGAATTCAATTTTAAATGTGTGTCACA
AAATGTTTGATGTAGAGGAAATTGATAGAAGTTCAACTTGGAGGGAACTC
GAAGCGATCAGATTCGGATTGGATTCATTTTGCCATAAGTTAAGTAACTC
TTCCATATCTTGGATGACAGATAATAGAGCAGCCATGTATGTTTCTTCAG
GTGGTAGCAATAAGCCCCATTTACAAGAATTAGCACTAAGAATCTACGAA
TTGTCTCGTAACTTTAATATAAATGTGGAAGTGAATTGGGTTCCTAGGGA
CGAGAACCGAGTAGCGGACAGAGTTTCTAAAATAATAGATCCAGACGACT
GGGAAATCACAGAGGAATTTTTGCACTTTCTCGAACATCGTTGGGGTAAC
TTTACAGTCGTGAGATTCGCTAATTTTGACAATGCAAAATGCGAGAGGTT
TAATTCCAAGTATGTTGTGCCCGGTACAGAGGCTGTTGACGCCTTCACCC
AAGACTGGCGCTTAGAGCGAAATTTATTAGTTCCTCCTGTCAGCCAGATT
CCTCAAGTCTTACGCCTTTTAAAAAGCAATCTTTTcgaaaatacttacaa
aatcaCTCAGCAGCGTATATCTTCTCTTCTTTCAACAATCGAATTTATTT
TGAGAAGTCCTTACACAACAGCACGAGTTTTGTGTCGCCTAACAGGAAAA
GTcgtttcaatgaaatttgttTTGTCAAACATTATCAAATTAAAAACTAG
ATCTTTATACAAAGCCATTGATGAAGCTGTCTCATGGGATGGGAAgttta
acattttcaattatccAGACGCTCACAGAGAAATTCTTTTTTGGAGAGAC
AATGTAAATGTATTAAATAACAAAAGCGTGTTAAAGTCCCAAGTGAAGTA
TACTATCTATTCTGACGCAAGTAGCAGTGGGATAGGAGCTGTATTAAAAG
AGAATTCAATTTTAAATGTGTGTCACAAAATGTTTGATGTAGAGGAAATT
GATAGAAGTTCAACTTGGAGGGAACTCGAAGCGATCAGATTCGGATTGGA
TTCATTTTGCCATAAGTTAAGTAACTCTTCCATATCTTGGATGACAGATA
ATAGAGCAGCCATGTATGTTTCTTCAGGTGGTAGCAATAAGCCCCATTTA
CAAGAATTAGCACTAAGAATCTACGAATTGTCTCGTAACTTTAATATAAA
TGTGGAAGTGAATTGGGTTCCTAGGGACGAGAACCGAGTAGCGGACAGAG
TTTCTAAAATAATAGATCCAGACGACTGGGAAATCACAGAGGAATTTTTG
CACTTTCTCGAACATCGTTGGGGTAACTTTACAGTCGTGAGATTCGCTAA
TTTTGACAATGCAAAATGCGAGAGGTTTAATTCCAAGTATGTTGTGCCCG
GTACAGAGGCTGTTGACGCCTTCACCCAAGACTGGCGCTTAGAGCGAAAT
TTATTAGTTCCTCCTGTCAGCCAGATTCCTCAAGTCTTACGCCTTTTAAA
AAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024360XLOC_024360Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040156-proteinTCONS_00040156-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040156-exon-sc0002331-1491911889:24010..24849TCONS_00040156-exon-sc0002331-1491911889:24010..24849Clytia hemisphaericaexon
TCONS_00040156-exon-sc0002331-1510915933:24010..24849TCONS_00040156-exon-sc0002331-1510915933:24010..24849Clytia hemisphaericaexon
TCONS_00040156-exon-sc0002331-1575043694:24010..24849TCONS_00040156-exon-sc0002331-1575043694:24010..24849Clytia hemisphaericaexon
TCONS_00040156-exon-sc0002331-1491911889:24939..25027TCONS_00040156-exon-sc0002331-1491911889:24939..25027Clytia hemisphaericaexon
TCONS_00040156-exon-sc0002331-1510915933:24939..25027TCONS_00040156-exon-sc0002331-1510915933:24939..25027Clytia hemisphaericaexon
TCONS_00040156-exon-sc0002331-1575043694:24939..25027TCONS_00040156-exon-sc0002331-1575043694:24939..25027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002331supercontigsc0002331:24010..25027 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.593039	0.559303	0.345331	0	0	0	0	0	0	0	0	0	0.0516786	0	0	0	0	0.0176231	0	0	0	0	0.497414	0.118039	0	0	0.123689	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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