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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040153 ID=TCONS_00040153|Name=TCONS_00040153|organism=Clytia hemisphaerica|type=transcript|length=1375bp
NNTGGTGATTTTCTCACAACCAAATACGCTGAAAACCTCAAGGAAAGCCT
CGTAAAGAATTTCCAGGATACGACTGTCATTCTTGCGCTCCAAAGTGTAG
AAAAAAGACGCAAAGTTATCAAATCTGGATTTTTCAGTGACAATGTCAAG
CAAGTTGAGAGATGCGACTACCATCAAACCGGTATGAAAGTCTTCACTCT
GGACAAAACAATGCGAATGGCGGTAAATATTCACCAGATGATTGAAATCT
TTCAGGAAGAAATCGAAAAGGAAATCGTAGACGTACCGTTGGAATACAAA
ACACGAATTCTACGCAGACCGTACGCACCCTCCGCCCGTAAAACAAGAAA
AGCCTCCAAAGATGTCCCTCTTAAGCCTCAAGAACAGAAAGAACAAAAGC
AACCGAAACCAACGGATGACGTCAGTCTCCACGATAACCCGAATCATCCC
TCAACTCAAAGCGTGCGAAGGAAAACCAACATTGCCTCATTctacgatcc
agaaaaattgtTAACAGACATAAACGCTCAATCAAGGTCTGTttccaaaa
aactttcaacttcATTCTCTTATGTTCGTGGTCAAAGTGGTCATCAAatc
aaaagtgattcaaaaccCAATCTTATTTATCTAAACGACTTAAGATTCGA
CTTCAACAACTTTAATTCGTCTGATGCAGCTTATTTGAGTGCAATTTTAA
GAAGGCTGATGAAAAAGGATGTTCAGTTAACCGTAATCTGTGGTACACTT
GAAGAACTAGCTATTCTGAAATATGTGTTTCGACATAATTTAGAGGTATC
AGAAATAACAACATTTGCACCGTCTTTAACAGGAAAATACCCAACCAAAG
CAGAGAAATTGGAGGCTTTAAAAACGGGAAAAGTTCTACTCACTTGTTAT
AGAGGTTTCAGAGGTTGTGAAATAGAGCAATGTATTTTATTTGTTAACCC
TCAAGATAACGTTCCAAAGAATTTGTACATTGAGATGCTCACTCGAGCTA
TCAATTTCGTAGACATAATCGTTCTTCCTGTAAAGAAATCAAGCAGGGTA
TCTCATTTGATTGGGATTTTCGATAAATGGCTGCAAGCTGGTCTTGTTTC
TCCTACACATACTAAACGTTCAAGTACAAACATTATTTTCTCGTCATTGG
AAGAGCTAGATGATATTGTACCACTTGATCAAACCTGCGATCAAAATGTT
GAAAGACAAATTCTTCAAGTCATTGAGGATAGCTCGTTATTCAATCACGC
CCACATCGACGCAGCAGTAGGgaaTCTACAACAATTCAGGACTAGACACT
TCGGATACGAACTTCGAGACACAGCACGTAATGGGATAGTGACAATCGAT
GGAACAAAATACGATTTTGATGNTA Run BLAST on NCBI transcript from alignment at sc0002330:1395..3971- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040153 ID=TCONS_00040153|Name=TCONS_00040153|organism=Clytia hemisphaerica|type=transcript|length=2577bp|location=Sequence derived from alignment at sc0002330:1395..3971- (Clytia hemisphaerica)
NNTGGTGATTTTCTCACAACCAAATACGCTGAAAACCTCAAGGAAAGCCT
CGTAAAGAATTTCCAGGATACGACTGTCATTCTTGCGCTCCAAAGTGTAG
AAAAAAGACGCAAAGTTATCAAATCTGGATTTTTCAGTGGTAAGTCATTC
TTAAACTTTGCGTAGACCATAAAAATGATGTTATCTTTTTTTACTCAGAT
TTCATTAGTAGGCCTGTAGACCATGTCCTTTGATGGGTTAAATGGAAAAC
AATATTTTGGGAGACTATTGCATGTACTACTTTGCTTTTTGAAGCAAGCG
AACCACTCACTTCACCATGCAATATTTTGCACAAAAACGGTTATTCAATT
TTTATCGAATTCCTTTTGTAGACAATGTCAAGCAAGTTGAGAGATGCGAC
TACCATCAAACCGGTATGAAAGTCTTCACTCTGGACAAAACAATGCGAAT
GGCGGTAAATATTCACCAGATGATTGAAATCTTTCAGGAAGAAATCGAAA
AGGAAATCGTAGACGTACCGTTGGAATACAAAACACGAATTCTACGCAGA
CCGTACGCACCCTCCGCCCGTAAAACAAGAAAAGCCTCCAAAGATGTCCC
TCTTAAGCCTCAAGAACAGAAAGAACAAAAGCAACCGAAACCAACGGATG
ACGTCAGTCTCCACGATAACCCGAATCATCCCTCAACTCAAAGCGTGCGA
AGGAAAACCAACATTGCCTCATTCTACGATCCAGAAAAATTGTTAACAGA
CATAAACGCTCAATCAAGGTCTGTTTCCAAAAAACTTTCAACTTCATTCT
CTTATGTTCGTGGTCAAAGTGGTCATCAAATCAAAAGTGATTCAAAACCC
AATCTTATTTATCTAAACGACTTAAGATTCGACTTCAACAACTTTAATTC
GTCTGATGCAGCTTATTTGAGTGCAATTTTAAGAAGGCTGATGAAAAAGG
ATGTTCAGTTAACCGTAATCTGTGGTACACTTGAAGAACTAGCTATTCTG
AAATATGTGTTTCGACATAATTTAGAGGTATCAGAAATAACAACATTTGC
ACCGTCTTTAACAGGAAAATACCCAACCAAAGCAGAGAAATTGGAGGCTT
TAAAAACGGGAAAAGTTCTACTCACTTGTTATAGAGGTTTCAGAGGTTGT
GAAATAGAGCAATGTATTTTATTTGTTAACCCTCAAGATAACGTTCCAAA
GAATTTGTACATTGAGATGCTCACTCGAGCTATCAATTTCGTAGACATAA
TCGTTCTTCCTGTAAAGAAATCAAGCAGGGTATCTCATTTGATTGGGATT
TTCGATAAATGGCTGCAAGCTGGTCTTGTTTCTCCTACACATACTAAACG
TTCAAGTACAAACATTATTTTCTCGTCATTGGAAGAGCTAGATGATATTG
TACCACTTGATCAAACCTGCGATCAAAATGTTGAAAGACAAATTCTTCAA
GTCATTGAGGATAGCTCGTTATTCAATCACGCCCACATCGACGCAGCAGT
AGGGTAAGTAGAACTTATTGTATATCGGTACTTTACATGCAATATTCATA
GTAGCCCTTATTACTTTTTACAACGTAATGAAGTGTTTCATCTTAGTGTA
TTCTCGAAAGTTTATTACTTACAACATAACCTACACTAAGTGCGTAATGT
AATATCATTAGTACTAAAAAAATCGAAGATACAGAGCACATGTCCTCATG
GTAAGCTTCATCCGATAACATTCATCTAAATAATTAGTCTTGTGATACCA
ACGCAACGGAAGCAGATTTTTAAAAAATGCTTTGGTTTTAAAGAAAGTTA
TTTTTTTCTTATTTTTTCAGGAATCTACAACAATTCAGGACTAGGTATAA
TTCCAATGAAATAATTTTCAAACTGTCTTAAGGGTCATGTCTTTTTTGCT
AAGTATTTAAGGAAATTTAACTAATTCAAACTCTACCTCCAGTCTTTGAA
GATTTTAGTTACCCGTTCAAAGCTTGTTAGATAACACAAAGGCTCCTTTA
TACTTTTTGATTGGCGGGAATAGTGTCGTTTATTCGCTCAAACATCGTAA
TTTTTTTTCTATAGCACAGAGACTAAACCTTAGCTGTCTTCATGAAAAAG
ACTGTTTAGATGTCGGTTAGTTTTGGATGTATGGAGGGAGCCTTTTACAC
TCCGGGACTGAATTTTGACTACAGCCCTGTTATTGCGGAGAACGTGCTGG
CCTTTTCGGATTGGGTTCGTATTGTAAATGGTGATATAAATTAGTAACTA
GTAGGTTCTTTAATGCCAGAATTACGCAAGCCTAACTGTGCCATGGCTGG
TTGTGCTTCCTCACCAATTGTCCCAAAATTAAAGAAGAAAGGAGGTAAGC
AGAATCTTAAGCAAACTTTTACACGTCCCAAAGCCATGTCTGTCGAGGGT
AAAGGGAGGCAGGAAGAAAAGATTGGAACAGTAGGAAAACACTTTTGGAA
AATTTCTGCTTGGTCGAATTCCCTTTTCATCCTTCCTTGTCTTGTAGACA
CTTCGGATACGAACTTCGAGACACAGCACGTAATGGGATAGTGACAATCG
ATGGAACAAAATACGATTTTGATGNTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040153-exon-sc0002330-1575043694:3833..3971 | TCONS_00040153-exon-sc0002330-1575043694:3833..3971 | Clytia hemisphaerica | exon |
| TCONS_00040153-exon-sc0002330-1575043694:2469..3600 | TCONS_00040153-exon-sc0002330-1575043694:2469..3600 | Clytia hemisphaerica | exon |
| TCONS_00040153-exon-sc0002330-1575043694:2128..2151 | TCONS_00040153-exon-sc0002330-1575043694:2128..2151 | Clytia hemisphaerica | exon |
| TCONS_00040153-exon-sc0002330-1575043694:1395..1474 | TCONS_00040153-exon-sc0002330-1575043694:1395..1474 | Clytia hemisphaerica | exon |
| TCONS_00040153-exon-sc0002330-1510915933:3833..3971 | TCONS_00040153-exon-sc0002330-1510915933:3833..3971 | Clytia hemisphaerica | exon |
| TCONS_00040153-exon-sc0002330-1510915933:2469..3600 | TCONS_00040153-exon-sc0002330-1510915933:2469..3600 | Clytia hemisphaerica | exon |
| TCONS_00040153-exon-sc0002330-1510915933:2128..2151 | TCONS_00040153-exon-sc0002330-1510915933:2128..2151 | Clytia hemisphaerica | exon |
| TCONS_00040153-exon-sc0002330-1510915933:1395..1474 | TCONS_00040153-exon-sc0002330-1510915933:1395..1474 | Clytia hemisphaerica | exon |
| TCONS_00040153-exon-sc0002330-1491911889:3833..3971 | TCONS_00040153-exon-sc0002330-1491911889:3833..3971 | Clytia hemisphaerica | exon |
| TCONS_00040153-exon-sc0002330-1491911889:2469..3600 | TCONS_00040153-exon-sc0002330-1491911889:2469..3600 | Clytia hemisphaerica | exon |
| TCONS_00040153-exon-sc0002330-1491911889:2128..2151 | TCONS_00040153-exon-sc0002330-1491911889:2128..2151 | Clytia hemisphaerica | exon |
| TCONS_00040153-exon-sc0002330-1491911889:1395..1474 | TCONS_00040153-exon-sc0002330-1491911889:1395..1474 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002330 | supercontig | sc0002330:1395..3971 - |
Blast
The following BLAST results are available for this feature:
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