TCONS_00040152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040152
Unique NameTCONS_00040152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length756

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040152 ID=TCONS_00040152|Name=TCONS_00040152|organism=Clytia hemisphaerica|type=transcript|length=756bp
TGGTGATTTTCTCACAACCAAATACGCTGAAAACCTCAAGGAAAGCCTCG
TAAAGAATTTCCAGGATACGACTGTCATTCTTGCGCTCCAAAGTGTAGAA
AAAAGACGCAAAGTTATCAAATCTGGATTTTTCAGTGACAATGTCAAGCA
AGTTGAGAGATGCGACTACCATCAAACCGGTATGAAAGTCTTCACTCTGG
ACAAAACAATGCGAATGGCGGTAAATATTCACCAGATGATTGAAATCTTT
CAGGAAGAAATCGAAAAGGAAATCGTAGACGTACCGTTGGAATACAAAAC
ACGAATTCTACGCAGACCGTACGCACCCTCCGCCCGTAAAACAAGAAAAG
CCTCCAAAGATGTCCCTCTTAAGCCTCAAGAACAGAAAGAACAAAAGCAA
CCGAAACCAACGGATGACGTCAGTCTCCACGATAACCCGAATCATCCCTC
AACTCAAAGCGTGCGAAGGAAAACCAACATTGCCTCATTctacgatccag
aaaaattgtTAACAGACATAAACGCTCAATCAAGAGCTAGATGATATTGT
ACCACTTGATCAAACCTGCGATCAAAATGTTGAAAGACAAATTCTTCAAG
TCATTGAGGATAGCTCGTTATTCAATCACGCCCACATCGACGCAGCAGTA
GGgaaTCTACAACAATTCAGGACTAGACACTTCGGATACGAACTTCGAGA
CACAGCACGTAATGGGATAGTGACAATCGATGGAACAAAATACGATTTTG
ATGNTA
Run BLAST on NCBI

protein sequence of TCONS_00040152-protein

>TCONS_00040152-protein ID=TCONS_00040152-protein|Name=TCONS_00040152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
GDFLTTKYAENLKESLVKNFQDTTVILALQSVEKRRKVIKSGFFSDNVKQ
VERCDYHQTGMKVFTLDKTMRMAVNIHQMIEIFQEEIEKEIVDVPLEYKT
RILRRPYAPSARKTRKASKDVPLKPQEQKEQKQPKPTDDVSLHDNPNHPS
TQSVRRKTNIASFYDPEKLLTDINAQSRAR
Run BLAST on NCBI

transcript from alignment at sc0002330:1395..3969-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040152 ID=TCONS_00040152|Name=TCONS_00040152|organism=Clytia hemisphaerica|type=transcript|length=2575bp|location=Sequence derived from alignment at sc0002330:1395..3969- (Clytia hemisphaerica)
TGGTGATTTTCTCACAACCAAATACGCTGAAAACCTCAAGGAAAGCCTCG
TAAAGAATTTCCAGGATACGACTGTCATTCTTGCGCTCCAAAGTGTAGAA
AAAAGACGCAAAGTTATCAAATCTGGATTTTTCAGTGGTAAGTCATTCTT
AAACTTTGCGTAGACCATAAAAATGATGTTATCTTTTTTTACTCAGATTT
CATTAGTAGGCCTGTAGACCATGTCCTTTGATGGGTTAAATGGAAAACAA
TATTTTGGGAGACTATTGCATGTACTACTTTGCTTTTTGAAGCAAGCGAA
CCACTCACTTCACCATGCAATATTTTGCACAAAAACGGTTATTCAATTTT
TATCGAATTCCTTTTGTAGACAATGTCAAGCAAGTTGAGAGATGCGACTA
CCATCAAACCGGTATGAAAGTCTTCACTCTGGACAAAACAATGCGAATGG
CGGTAAATATTCACCAGATGATTGAAATCTTTCAGGAAGAAATCGAAAAG
GAAATCGTAGACGTACCGTTGGAATACAAAACACGAATTCTACGCAGACC
GTACGCACCCTCCGCCCGTAAAACAAGAAAAGCCTCCAAAGATGTCCCTC
TTAAGCCTCAAGAACAGAAAGAACAAAAGCAACCGAAACCAACGGATGAC
GTCAGTCTCCACGATAACCCGAATCATCCCTCAACTCAAAGCGTGCGAAG
GAAAACCAACATTGCCTCATTCTACGATCCAGAAAAATTGTTAACAGACA
TAAACGCTCAATCAAGGTCTGTTTCCAAAAAACTTTCAACTTCATTCTCT
TATGTTCGTGGTCAAAGTGGTCATCAAATCAAAAGTGATTCAAAACCCAA
TCTTATTTATCTAAACGACTTAAGATTCGACTTCAACAACTTTAATTCGT
CTGATGCAGCTTATTTGAGTGCAATTTTAAGAAGGCTGATGAAAAAGGAT
GTTCAGTTAACCGTAATCTGTGGTACACTTGAAGAACTAGCTATTCTGAA
ATATGTGTTTCGACATAATTTAGAGGTATCAGAAATAACAACATTTGCAC
CGTCTTTAACAGGAAAATACCCAACCAAAGCAGAGAAATTGGAGGCTTTA
AAAACGGGAAAAGTTCTACTCACTTGTTATAGAGGTTTCAGAGGTTGTGA
AATAGAGCAATGTATTTTATTTGTTAACCCTCAAGATAACGTTCCAAAGA
ATTTGTACATTGAGATGCTCACTCGAGCTATCAATTTCGTAGACATAATC
GTTCTTCCTGTAAAGAAATCAAGCAGGGTATCTCATTTGATTGGGATTTT
CGATAAATGGCTGCAAGCTGGTCTTGTTTCTCCTACACATACTAAACGTT
CAAGTACAAACATTATTTTCTCGTCATTGGAAGAGCTAGATGATATTGTA
CCACTTGATCAAACCTGCGATCAAAATGTTGAAAGACAAATTCTTCAAGT
CATTGAGGATAGCTCGTTATTCAATCACGCCCACATCGACGCAGCAGTAG
GGTAAGTAGAACTTATTGTATATCGGTACTTTACATGCAATATTCATAGT
AGCCCTTATTACTTTTTACAACGTAATGAAGTGTTTCATCTTAGTGTATT
CTCGAAAGTTTATTACTTACAACATAACCTACACTAAGTGCGTAATGTAA
TATCATTAGTACTAAAAAAATCGAAGATACAGAGCACATGTCCTCATGGT
AAGCTTCATCCGATAACATTCATCTAAATAATTAGTCTTGTGATACCAAC
GCAACGGAAGCAGATTTTTAAAAAATGCTTTGGTTTTAAAGAAAGTTATT
TTTTTCTTATTTTTTCAGGAATCTACAACAATTCAGGACTAGGTATAATT
CCAATGAAATAATTTTCAAACTGTCTTAAGGGTCATGTCTTTTTTGCTAA
GTATTTAAGGAAATTTAACTAATTCAAACTCTACCTCCAGTCTTTGAAGA
TTTTAGTTACCCGTTCAAAGCTTGTTAGATAACACAAAGGCTCCTTTATA
CTTTTTGATTGGCGGGAATAGTGTCGTTTATTCGCTCAAACATCGTAATT
TTTTTTCTATAGCACAGAGACTAAACCTTAGCTGTCTTCATGAAAAAGAC
TGTTTAGATGTCGGTTAGTTTTGGATGTATGGAGGGAGCCTTTTACACTC
CGGGACTGAATTTTGACTACAGCCCTGTTATTGCGGAGAACGTGCTGGCC
TTTTCGGATTGGGTTCGTATTGTAAATGGTGATATAAATTAGTAACTAGT
AGGTTCTTTAATGCCAGAATTACGCAAGCCTAACTGTGCCATGGCTGGTT
GTGCTTCCTCACCAATTGTCCCAAAATTAAAGAAGAAAGGAGGTAAGCAG
AATCTTAAGCAAACTTTTACACGTCCCAAAGCCATGTCTGTCGAGGGTAA
AGGGAGGCAGGAAGAAAAGATTGGAACAGTAGGAAAACACTTTTGGAAAA
TTTCTGCTTGGTCGAATTCCCTTTTCATCCTTCCTTGTCTTGTAGACACT
TCGGATACGAACTTCGAGACACAGCACGTAATGGGATAGTGACAATCGAT
GGAACAAAATACGATTTTGATGNTA

Coding sequence (CDS) from alignment at sc0002330:1395..3969-

>TCONS_00040152 ID=TCONS_00040152|Name=TCONS_00040152|organism=Clytia hemisphaerica|type=CDS|length=1629bp|location=Sequence derived from alignment at sc0002330:1395..3969- (Clytia hemisphaerica)
AGCTAGATGAACAATGTCAAGCAAGTTGAGAGATGCGACTACCATCAAAC
CGGTATGAAAGTCTTCACTCTGGACAAAACAATGCGAATGGCGGTAAATA
TTCACCAGATGATTGAAATCTTTCAGGAAGAAATCGAAAAGGAAATCGTA
GACGTACCGTTGGAATACAAAACACGAATTCTACGCAGACCGTACGCACC
CTCCGCCCGTAAAACAAGAAAAGCCTCCAAAGATGTCCCTCTTAAGCCTC
AAGAACAGAAAGAACAAAAGCAACCGAAACCAACGGATGACGTCAGTCTC
CACGATAACCCGAATCATCCCTCAACTCAAAGCGTGCGAAGGAAAACCAA
CATTGCCTCATTCTACGATCCAGAAAAATTGTTAACAGACATAAACGCTC
AATCAAGGGTGATTTTCTCACAACCAAATACGCTGAAAACCTCAAGGAAA
GCCTCGTAAAGAATTTCCAGGATACGACTGTCATTCTTGCGCTCCAAAGT
GTAGAAAAAAGACGCAAAGTTATCAAATCTGGATTTTTCAGTGAGCTAGA
TGAACAATGTCAAGCAAGTTGAGAGATGCGACTACCATCAAACCGGTATG
AAAGTCTTCACTCTGGACAAAACAATGCGAATGGCGGTAAATATTCACCA
GATGATTGAAATCTTTCAGGAAGAAATCGAAAAGGAAATCGTAGACGTAC
CGTTGGAATACAAAACACGAATTCTACGCAGACCGTACGCACCCTCCGCC
CGTAAAACAAGAAAAGCCTCCAAAGATGTCCCTCTTAAGCCTCAAGAACA
GAAAGAACAAAAGCAACCGAAACCAACGGATGACGTCAGTCTCCACGATA
ACCCGAATCATCCCTCAACTCAAAGCGTGCGAAGGAAAACCAACATTGCC
TCATTCTACGATCCAGAAAAATTGTTAACAGACATAAACGCTCAATCAAG
GGTGATTTTCTCACAACCAAATACGCTGAAAACCTCAAGGAAAGCCTCGT
AAAGAATTTCCAGGATACGACTGTCATTCTTGCGCTCCAAAGTGTAGAAA
AAAGACGCAAAGTTATCAAATCTGGATTTTTCAGTGAGCTAGATGAACAA
TGTCAAGCAAGTTGAGAGATGCGACTACCATCAAACCGGTATGAAAGTCT
TCACTCTGGACAAAACAATGCGAATGGCGGTAAATATTCACCAGATGATT
GAAATCTTTCAGGAAGAAATCGAAAAGGAAATCGTAGACGTACCGTTGGA
ATACAAAACACGAATTCTACGCAGACCGTACGCACCCTCCGCCCGTAAAA
CAAGAAAAGCCTCCAAAGATGTCCCTCTTAAGCCTCAAGAACAGAAAGAA
CAAAAGCAACCGAAACCAACGGATGACGTCAGTCTCCACGATAACCCGAA
TCATCCCTCAACTCAAAGCGTGCGAAGGAAAACCAACATTGCCTCATTCT
ACGATCCAGAAAAATTGTTAACAGACATAAACGCTCAATCAAGGGTGATT
TTCTCACAACCAAATACGCTGAAAACCTCAAGGAAAGCCTCGTAAAGAAT
TTCCAGGATACGACTGTCATTCTTGCGCTCCAAAGTGTAGAAAAAAGACG
CAAAGTTATCAAATCTGGATTTTTCAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024357XLOC_024357Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040152-proteinTCONS_00040152-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040152-exon-sc0002330-1575043694:3833..3969TCONS_00040152-exon-sc0002330-1575043694:3833..3969Clytia hemisphaericaexon
TCONS_00040152-exon-sc0002330-1575043694:3204..3600TCONS_00040152-exon-sc0002330-1575043694:3204..3600Clytia hemisphaericaexon
TCONS_00040152-exon-sc0002330-1575043694:2469..2586TCONS_00040152-exon-sc0002330-1575043694:2469..2586Clytia hemisphaericaexon
TCONS_00040152-exon-sc0002330-1575043694:2128..2151TCONS_00040152-exon-sc0002330-1575043694:2128..2151Clytia hemisphaericaexon
TCONS_00040152-exon-sc0002330-1575043694:1395..1474TCONS_00040152-exon-sc0002330-1575043694:1395..1474Clytia hemisphaericaexon
TCONS_00040152-exon-sc0002330-1510915933:3833..3969TCONS_00040152-exon-sc0002330-1510915933:3833..3969Clytia hemisphaericaexon
TCONS_00040152-exon-sc0002330-1510915933:3204..3600TCONS_00040152-exon-sc0002330-1510915933:3204..3600Clytia hemisphaericaexon
TCONS_00040152-exon-sc0002330-1510915933:2469..2586TCONS_00040152-exon-sc0002330-1510915933:2469..2586Clytia hemisphaericaexon
TCONS_00040152-exon-sc0002330-1510915933:2128..2151TCONS_00040152-exon-sc0002330-1510915933:2128..2151Clytia hemisphaericaexon
TCONS_00040152-exon-sc0002330-1510915933:1395..1474TCONS_00040152-exon-sc0002330-1510915933:1395..1474Clytia hemisphaericaexon
TCONS_00040152-exon-sc0002330-1491911889:3833..3969TCONS_00040152-exon-sc0002330-1491911889:3833..3969Clytia hemisphaericaexon
TCONS_00040152-exon-sc0002330-1491911889:3204..3600TCONS_00040152-exon-sc0002330-1491911889:3204..3600Clytia hemisphaericaexon
TCONS_00040152-exon-sc0002330-1491911889:2469..2586TCONS_00040152-exon-sc0002330-1491911889:2469..2586Clytia hemisphaericaexon
TCONS_00040152-exon-sc0002330-1491911889:2128..2151TCONS_00040152-exon-sc0002330-1491911889:2128..2151Clytia hemisphaericaexon
TCONS_00040152-exon-sc0002330-1491911889:1395..1474TCONS_00040152-exon-sc0002330-1491911889:1395..1474Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002330supercontigsc0002330:1395..3969 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.278082	0.117538	0.146873	0.118127	0	0	0	0	0.798387	2.26779	1.83908	0.66768	2.25769	6.93595	0.692311	4.0783	3.63186	1.90594	3.15084	4.78655	0	0.607599	0.266652	0	1.25792	1.73145	7.72318	3.82552	2.17254	6.65673
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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