TCONS_00040148 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040148
Unique NameTCONS_00040148
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length336

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040148 ID=TCONS_00040148|Name=TCONS_00040148|organism=Clytia hemisphaerica|type=transcript|length=336bp
CCCCCTGATCATAAAATTGATGATTACAGTTTAACGATgaatgattttat
tgatttcttttgaGGCACTTTTATGACACCAGTCTTGTTATTAACATGAT
TAGTTTTCGTATGGGACATTAGGAGGCAGAACTTCAGCTGAGATCCTTCA
GTTACAATGGTTGATTGATTTAACATGTAAGCATTGGTAATTATCCAATT
TATGCATGGAAACGTCTCTTCGTTGTGAAATGTAATCTAGCAACTTCAAT
CGAAGAATACGGAAGAACGAAAAACTGTACGAGCTGCGGATTTCGACCCA
GCAAGGCCTCGTCTTTATTCTTTCGAACTTTCTAGA
Run BLAST on NCBI

transcript from alignment at sc0002329:18589..18924

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040148 ID=TCONS_00040148|Name=TCONS_00040148|organism=Clytia hemisphaerica|type=transcript|length=336bp|location=Sequence derived from alignment at sc0002329:18589..18924 (Clytia hemisphaerica)
TCTAGAAAGTTCGAAAGAATAAAGACGAGGCCTTGCTGGGTCGAAATCCG
CAGCTCGTACAGTTTTTCGTTCTTCCGTATTCTTCGATTGAAGTTGCTAG
ATTACATTTCACAACGAAGAGACGTTTCCATGCATAAATTGGATAATTAC
CAATGCTTACATGTTAAATCAATCAACCATTGTAACTGAAGGATCTCAGC
TGAAGTTCTGCCTCCTAATGTCCCATACGAAAACTAATCATGTTAATAAC
AAGACTGGTGTCATAAAAGTGCCtcaaaagaaatcaataaaatcattcAT
CGTTAAACTGTAATCATCAATTTTATGATCAGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024354XLOC_024354Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040148-exon-sc0002329-1491911889:18589..18924TCONS_00040148-exon-sc0002329-1491911889:18589..18924Clytia hemisphaericaexon
TCONS_00040148-exon-sc0002329-1510915933:18589..18924TCONS_00040148-exon-sc0002329-1510915933:18589..18924Clytia hemisphaericaexon
TCONS_00040148-exon-sc0002329-1575043694:18589..18924TCONS_00040148-exon-sc0002329-1575043694:18589..18924Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002329supercontigsc0002329:18589..18924 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27107	0.301838	1.46058	0.450057	0.577418	0.468221	0.691649	1.08457	0	0.413083	0	0.328026	1.70455	1.08224	2.08723	0	0	1.27558	2.5859	1.88575	1.62611	0	0	1.71987	0.398313	0.377485	1.17762	0	0.834554	0.592938
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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