TCONS_00040145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040145
Unique NameTCONS_00040145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040145 ID=TCONS_00040145|Name=TCONS_00040145|organism=Clytia hemisphaerica|type=transcript|length=434bp
CCCATATCTTGACAGAGGGAGGTCACGATTCATGCGAAGACGCCAGATCG
TGTATGGAACTGATGAAATACAAATTCAACGAAGACGCGAAAGCCGCCAA
TCGTGGTTCTCACAAACATATCTCTTCCTCGTCTTTCTACACCAAAGCTC
CATTGATGAAATTCTGAAGTGTTTTACAGTATGATAGAAAGTACATTGTT
TGTCGAGGTTTTTAGTATGGGTATCgtcacagatttataaagctcaAAGA
ACTGTAGATGCcatgctttggctgaaaagtgtgccgaggttaggtaggaa
atcctatctaggtcacgtgatattgaaatagaatttcagtgcttgaccaa
tcagaagctttgtgggttttcgaaaacaatagcagaaatattttttgcga
tgaTTCACTTTCTTCTGACTGGAAGAGTTTAAAG
Run BLAST on NCBI

transcript from alignment at sc0002328:14297..14763-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040145 ID=TCONS_00040145|Name=TCONS_00040145|organism=Clytia hemisphaerica|type=transcript|length=467bp|location=Sequence derived from alignment at sc0002328:14297..14763- (Clytia hemisphaerica)
CCCATATCTTGACAGAGGGAGGTCACGATTCATGCGAAGACGCCAGATCG
TGTATGGAACTGATGAAATACAAATTCAACGAAGACGCGAAAGCCGCCAA
TCGTGGTTCTCACAAACATATCTCTTCCTCGTCTTTCTACACCAAAGCTC
CATTGATGAAATTCTGAAGTGTTTTACAGTATGATAGAAAGTACATTGTT
TGTCGAGGTTTGTATACGGTGTTACGTTCAGTTTTGTGATACAGTTAGTA
TGGGTATCGTCACAGATTTATAAAGCTCAAAGAACTGTAGATGCCATGCT
TTGGCTGAAAAGTGTGCCGAGGTTAGGTAGGAAATCCTATCTAGGTCACG
TGATATTGAAATAGAATTTCAGTGCTTGACCAATCAGAAGCTTTGTGGGT
TTTCGAAAACAATAGCAGAAATATTTTTTGCGATGATTCACTTTCTTCTG
ACTGGAAGAGTTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024351XLOC_024351Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040145-exon-sc0002328-1575043694:14553..14763TCONS_00040145-exon-sc0002328-1575043694:14553..14763Clytia hemisphaericaexon
TCONS_00040145-exon-sc0002328-1575043694:14297..14519TCONS_00040145-exon-sc0002328-1575043694:14297..14519Clytia hemisphaericaexon
TCONS_00040145-exon-sc0002328-1510915933:14553..14763TCONS_00040145-exon-sc0002328-1510915933:14553..14763Clytia hemisphaericaexon
TCONS_00040145-exon-sc0002328-1510915933:14297..14519TCONS_00040145-exon-sc0002328-1510915933:14297..14519Clytia hemisphaericaexon
TCONS_00040145-exon-sc0002328-1491911889:14553..14763TCONS_00040145-exon-sc0002328-1491911889:14553..14763Clytia hemisphaericaexon
TCONS_00040145-exon-sc0002328-1491911889:14297..14519TCONS_00040145-exon-sc0002328-1491911889:14297..14519Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002328supercontigsc0002328:14297..14763 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.249521	0.9896	0.244359	1.16169	1.278	0.33606	0.40679	1.1925	0.155254	0.35655	0.481032	0.751405	0.24189	1.10751	0.715687	0.223028	0.64689	1.39026	1.23081	0.198061	1.25207	0.465463	2.18852	4.03642	0	0	1.14892	1.05586	2.76117	3.13031
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top