TCONS_00040144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040144
Unique NameTCONS_00040144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040144 ID=TCONS_00040144|Name=TCONS_00040144|organism=Clytia hemisphaerica|type=transcript|length=874bp
CCAAGAAAAGTGATATCCACTGACCAAAATATAATGGCTCTACACTGCAA
GAAACCATTTTTACCATCAAGCATACAAAAACTGGTCGATAAAGATGAAA
TATTGGACACTTGTCAAGATACTTTTCACTACGGATCTAATAACGGATTC
GATAGCTCAGGATgctacttttcaatatatttccaACGAGGTCTTGGACT
TAGCAGAGATTACGATGGATGTAAAGTGATGTTGTATCGATTTGAAAACG
ATGAAGAAAAGATAGGTACTTGTTTTATAAATCTGTACCGTTCACCGAAA
GTCGTTCAGCCTCCAAATTTCAACCCATTTGATCCACCCGAAGATGCAGA
AGAAAGTGATTACGTCACTCAAAAACTTGAATACGACGTTGTTACAATGC
GTTGGTTTAACGTTGAAAAGACGTCCAAAGATGACGGGGACCACCAACTC
ACTGTTTACAGTAGCTGTTTGAGACCTCTGTACGAAAACGGTGGCAAAAA
GACAATCGATGTTGAGGAAGCTGATGATGGCAATGATGTACTTGTGCTTT
CGTATCCTAATATCCAAGGGTTTCTTGGAGCTGATATTAATAATatgGTT
TGTGGCAATTTTCTGGTACTGATGGTAACTCCTGATGAAGCAAATTTCAT
TGTTGATCTGATCAAGTTCGATGACAAAGAAATCTTCCATTTCAAACGTC
TAACAGCTCGAGGAGATTACACTGTATACAACCCTTTGTCTTTCGGCTTA
CCAAGCAAAGTATATCTGGACATGGAATGGCAAAGGTTTTACGTAATGAG
TAATTACGAGTTATATTGTTATGATTTTAACGGCGAAAAGATCTTCGACG
GTAGCATTCGCAATTACGAAGTAA
Run BLAST on NCBI

protein sequence of TCONS_00040144-protein

>TCONS_00040144-protein ID=TCONS_00040144-protein|Name=TCONS_00040144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
PRKVISTDQNIMALHCKKPFLPSSIQKLVDKDEILDTCQDTFHYGSNNGF
DSSGCYFSIYFQRGLGLSRDYDGCKVMLYRFENDEEKIGTCFINLYRSPK
VVQPPNFNPFDPPEDAEESDYVTQKLEYDVVTMRWFNVEKTSKDDGDHQL
TVYSSCLRPLYENGGKKTIDVEEADDGNDVLVLSYPNIQGFLGADINNMV
CGNFLVLMVTPDEANFIVDLIKFDDKEIFHFKRLTARGDYTVYNPLSFGL
PSKVYLDMEWQRFYVMSNYELYCYDFNGEKIFDGSIRNYEV
Run BLAST on NCBI

transcript from alignment at sc0002328:364..3353-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040144 ID=TCONS_00040144|Name=TCONS_00040144|organism=Clytia hemisphaerica|type=transcript|length=2990bp|location=Sequence derived from alignment at sc0002328:364..3353- (Clytia hemisphaerica)
CCAAGAAAAGTGATATCCACTGACCAAAATATAATGGCTCTACACTGCAA
GAAACCATTTTTACCATCAAGCATACAAAAACTGGTCGATAAAGATGAAA
TATTGGACACTTGTCAAGATACTTTTCACTACGGATCTAATAACGGATTC
GATAGCTCAGGATGCTACTTTTCAATATATTTCCAACGAGGTCTTGGACT
TAGCAGAGATTACGATGGATGTAAAGTGATGTTGTATCGATTTGAAAACG
ATGAAGAAAAGATAGGTGTAAGTGTAACGATTTCTTGGTCATTGCAGTGG
ACCCAGCTGGCACACAACGTTGTTTAAACGTTAATCTAACGTTCACAACG
TCCATATAATGTTAGATGAACGTTAAAACAACGTTGTGTGCCAGCTGGGG
AGTCTCCACAACTAGAACACGCACGGGGGACATTAATTTGTTCGTGTTAA
GGAAACTTCGACTTATGGAGTATAATGTGAGACCAGAAAACTTGTTCGAG
TTAAGGAAACCTTATAGAGGTTCGAGATAAAGAAACTCTATTGTATCTTC
AAAATTATTTGTTCTCATTTTTTGTTTCAATAATGTAGGGAAAAGAGAGA
AACTTAGGTAAAACGAGGATAAATTAAACGTGAACAACACGTTTGGTTGA
AAAAGATGAATTAGGATAAAACATCGGTGACGTAGGTAAAATGAAGGTAA
GTTTGGTAAAAAGAGAATTCTAACTTGTTATAACTTCTTTTAGACTTGTT
TTATAAATCTGTACCGTTCACCGAAAGTCGTTCAGCCTCCAAATTTCAAC
CCATTTGATCCACCCGAAGATGCAGAAGAAAGTGATTACGTCACTCAAAA
ACTTGAATACGACGTTGTTACAATGCGTTGGTTTAACGTTGAAAAGACGT
CCAAAGATGACGGGGACCACCAACTCACTGTTTACAGTAGCTGTTTGAGA
CCTCTGTACGAAAACGGTGGCAAAAAGACAATCGATGTTGAGGAAGCTGA
TGATGGCAATGATGTACTTGTGCTTTCGTATCCTAATATCCAAGGGTTTC
TTGGAGCTGATATTAATAATGTAGGTAATGATTTCAATGATAAGGTTATA
TAAACTTTACTTTTTTGTTTTAAAGTGTTCACTTTATACATTTTTCGTCC
TTTGATTTGGAACGAATTGAGTCTTCTTCATTCATTAGTATAGCAGAAAT
GATAATATTTTGAAGTAGCTTATTCTTCCTATTTCGTTCGTTCGTTCGTT
CGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGTTCGTTCGTTCGTTCGTTCGTTCGT
TCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTC
AAACATATCAGCGTGAAATTGCTTCACTTTTTAACGCCACTACACGGATT
TCGAATTAAGATTTTTTTGTAACTACAACTTTCTGCATATTTCCATATTT
TTTTTTACAGATGGTTTGTGGCAATTTTCTGGTACTGATGGTAACTCCTG
ATGAAGCAAATTTCATTGTTGATCTGATCAAGTTCGATGACAAAGAAATC
TTCCATTTCAAACGTCTAACAGCTCGAGGAGATTACACTGTATACAACCC
TTTGTCTTTCGGCTTACCAAGCAAAGTATATCTGGACATGGAATGGCAAA
GGTTTTACGTAATGAGTAATTACGAGTTATATTGTTATGATTTTAACGGC
GAAAAGATCTTCGACGGTAGCATTCGCAATTACGAAGTAA

Coding sequence (CDS) from alignment at sc0002328:364..3353-

>TCONS_00040144 ID=TCONS_00040144|Name=TCONS_00040144|organism=Clytia hemisphaerica|type=CDS|length=2619bp|location=Sequence derived from alignment at sc0002328:364..3353- (Clytia hemisphaerica)
ATGGTTTGTGGCAATTTTCTGGTACTGATGGTAACTCCTGATGAAGCAAA
TTTCATTGTTGATCTGATCAAGTTCGATGACAAAGAAATCTTCCATTTCA
AACGTCTAACAGCTCGAGGAGATTACACTGTATACAACCCTTTGTCTTTC
GGCTTACCAAGCAAAGTATATCTGGACATGGAATGGCAAAGGTTTTACGT
AATGAGTAATTACGAGTTATATTGTTATGATTTTAACGGCGAAAAGATCT
TCGACGGTAGCATTCGCAATTACGAAGTAACTTGTTTTATAAATCTGTAC
CGTTCACCGAAAGTCGTTCAGCCTCCAAATTTCAACCCATTTGATCCACC
CGAAGATGCAGAAGAAAGTGATTACGTCACTCAAAAACTTGAATACGACG
TTGTTACAATGCGTTGGTTTAACGTTGAAAAGACGTCCAAAGATGACGGG
GACCACCAACTCACTGTTTACAGTAGCTGTTTGAGACCTCTGTACGAAAA
CGGTGGCAAAAAGACAATCGATGTTGAGGAAGCTGATGATGGCAATGATG
TACTTGTGCTTTCGTATCCTAATATCCAAGGGTTTCTTGGAGCTGATATT
AATAATCCAAGAAAAGTGATATCCACTGACCAAAATATAATGGCTCTACA
CTGCAAGAAACCATTTTTACCATCAAGCATACAAAAACTGGTCGATAAAG
ATGAAATATTGGACACTTGTCAAGATACTTTTCACTACGGATCTAATAAC
GGATTCGATAGCTCAGGATGCTACTTTTCAATATATTTCCAACGAGGTCT
TGGACTTAGCAGAGATTACGATGGATGTAAAGTGATGTTGTATCGATTTG
AAAACGATGAAGAAAAGATAGGTATGGTTTGTGGCAATTTTCTGGTACTG
ATGGTAACTCCTGATGAAGCAAATTTCATTGTTGATCTGATCAAGTTCGA
TGACAAAGAAATCTTCCATTTCAAACGTCTAACAGCTCGAGGAGATTACA
CTGTATACAACCCTTTGTCTTTCGGCTTACCAAGCAAAGTATATCTGGAC
ATGGAATGGCAAAGGTTTTACGTAATGAGTAATTACGAGTTATATTGTTA
TGATTTTAACGGCGAAAAGATCTTCGACGGTAGCATTCGCAATTACGAAG
TAACTTGTTTTATAAATCTGTACCGTTCACCGAAAGTCGTTCAGCCTCCA
AATTTCAACCCATTTGATCCACCCGAAGATGCAGAAGAAAGTGATTACGT
CACTCAAAAACTTGAATACGACGTTGTTACAATGCGTTGGTTTAACGTTG
AAAAGACGTCCAAAGATGACGGGGACCACCAACTCACTGTTTACAGTAGC
TGTTTGAGACCTCTGTACGAAAACGGTGGCAAAAAGACAATCGATGTTGA
GGAAGCTGATGATGGCAATGATGTACTTGTGCTTTCGTATCCTAATATCC
AAGGGTTTCTTGGAGCTGATATTAATAATCCAAGAAAAGTGATATCCACT
GACCAAAATATAATGGCTCTACACTGCAAGAAACCATTTTTACCATCAAG
CATACAAAAACTGGTCGATAAAGATGAAATATTGGACACTTGTCAAGATA
CTTTTCACTACGGATCTAATAACGGATTCGATAGCTCAGGATGCTACTTT
TCAATATATTTCCAACGAGGTCTTGGACTTAGCAGAGATTACGATGGATG
TAAAGTGATGTTGTATCGATTTGAAAACGATGAAGAAAAGATAGGTATGG
TTTGTGGCAATTTTCTGGTACTGATGGTAACTCCTGATGAAGCAAATTTC
ATTGTTGATCTGATCAAGTTCGATGACAAAGAAATCTTCCATTTCAAACG
TCTAACAGCTCGAGGAGATTACACTGTATACAACCCTTTGTCTTTCGGCT
TACCAAGCAAAGTATATCTGGACATGGAATGGCAAAGGTTTTACGTAATG
AGTAATTACGAGTTATATTGTTATGATTTTAACGGCGAAAAGATCTTCGA
CGGTAGCATTCGCAATTACGAAGTAACTTGTTTTATAAATCTGTACCGTT
CACCGAAAGTCGTTCAGCCTCCAAATTTCAACCCATTTGATCCACCCGAA
GATGCAGAAGAAAGTGATTACGTCACTCAAAAACTTGAATACGACGTTGT
TACAATGCGTTGGTTTAACGTTGAAAAGACGTCCAAAGATGACGGGGACC
ACCAACTCACTGTTTACAGTAGCTGTTTGAGACCTCTGTACGAAAACGGT
GGCAAAAAGACAATCGATGTTGAGGAAGCTGATGATGGCAATGATGTACT
TGTGCTTTCGTATCCTAATATCCAAGGGTTTCTTGGAGCTGATATTAATA
ATCCAAGAAAAGTGATATCCACTGACCAAAATATAATGGCTCTACACTGC
AAGAAACCATTTTTACCATCAAGCATACAAAAACTGGTCGATAAAGATGA
AATATTGGACACTTGTCAAGATACTTTTCACTACGGATCTAATAACGGAT
TCGATAGCTCAGGATGCTACTTTTCAATATATTTCCAACGAGGTCTTGGA
CTTAGCAGAGATTACGATGGATGTAAAGTGATGTTGTATCGATTTGAAAA
CGATGAAGAAAAGATAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024350XLOC_024350Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040144-proteinTCONS_00040144-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040144-exon-sc0002328-1575043694:3087..3353TCONS_00040144-exon-sc0002328-1575043694:3087..3353Clytia hemisphaericaexon
TCONS_00040144-exon-sc0002328-1575043694:2284..2610TCONS_00040144-exon-sc0002328-1575043694:2284..2610Clytia hemisphaericaexon
TCONS_00040144-exon-sc0002328-1575043694:364..643TCONS_00040144-exon-sc0002328-1575043694:364..643Clytia hemisphaericaexon
TCONS_00040144-exon-sc0002328-1510915933:3087..3353TCONS_00040144-exon-sc0002328-1510915933:3087..3353Clytia hemisphaericaexon
TCONS_00040144-exon-sc0002328-1510915933:2284..2610TCONS_00040144-exon-sc0002328-1510915933:2284..2610Clytia hemisphaericaexon
TCONS_00040144-exon-sc0002328-1510915933:364..643TCONS_00040144-exon-sc0002328-1510915933:364..643Clytia hemisphaericaexon
TCONS_00040144-exon-sc0002328-1491911889:3087..3353TCONS_00040144-exon-sc0002328-1491911889:3087..3353Clytia hemisphaericaexon
TCONS_00040144-exon-sc0002328-1491911889:2284..2610TCONS_00040144-exon-sc0002328-1491911889:2284..2610Clytia hemisphaericaexon
TCONS_00040144-exon-sc0002328-1491911889:364..643TCONS_00040144-exon-sc0002328-1491911889:364..643Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002328supercontigsc0002328:364..3353 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.69174	7.89339	6.72562	4.82431	2.29007	2.68151	3.13506	2.74323	3.73276	3.59643	3.02298	2.64691	2.99644	3.54513	4.10621	4.72155	2.48757	3.69113	1.86751	1.80752	2.38064	1.34846	6.54003	5.77183	5.04592	5.78991	1.39816	1.15198	2.51907	3.20875
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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