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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040140 ID=TCONS_00040140|Name=TCONS_00040140|organism=Clytia hemisphaerica|type=transcript|length=1141bp
TTTCCACGTAGTTGAAGTATTTAGCAGTTGTGTTATCATACAAAATTGTG
CGTGCATTGTGTAACAGTCCACATACAAGATACATCTTTCCAATAGGGCT
CAACCCTAGTTTTAAGTTCTTTTTGTAATCCAGAAACTTAAAATAATTCA
CGATATCTCCAAAAACCCACTCAACAGAAACTCTGACAGAGCTCATGGAT
TTATTAAAGAGCGATTGAAGGGGTGTCAGTCGTGCACCCTGAAAAGGTCT
TTGAAGGTGGGCACGTAATGGGTACGCTGGATCCCCATAAATACAAAGTA
TGTCACCGTTCGGTGAAAAACTGTTATTCATAAGTTGGTTGTAAAGACCA
GATTCAACTAACATCGAGCTGTCATGCTTTTTCCCTTCAAAAGGACCATG
GAGTTGTGCGATCATTCCGTTTGGAGTAACAAgggattgaaattttattg
cGTGTATACGCTTGTGACCATTATATACCACTCTTTGATTTTCACCAGGT
CTGGAGCATGGTCGGACAGTCCCATCAACAAAAGCCCAGCAGTTCTCTAA
TGCAGCCCCTGCCTGGTGAATTGCATTTGCATAGTCTGCCAACTTTGCAC
GAGAAAGCCATGGCTGGTTCATATCTGTTAAAAGATGTCCAAAATGCCAA
TAAATGTAATTTGTCATGGTTGACACAACGTTGCTAAGTTCAGGTACAGA
TCTACCAAATAATGAAATCAAGTCTCCAAGTCTACTTGGATAAGCAAATC
TTCTCAACAATATGCATAGTGCTTCcactttatcaaaattttgtctaTTT
GGGCAGTAAATTTTGTCTGGTAATTGAAAGACATCAGCCAAGTTGTAAAT
ATCGTTCTTTAAAAATCTAAACATTGCCAAGCATTCATCATCTGACAGTT
TATCTAGATCGAAAGGATCATACTTCCAATATGGAAAATCTGGGTTTCTA
CTCCTGTTTAAGTCAAATAGAGCAATAAATTCTTCATCGTCAATAACACC
ATTGTTATGTGCAAATAAAATCTGTTCTCTGACATCTCTCAAAGacatga
ttttcaattttttatttctatgatTTGCCTGACAGCAGTCAGTCTgaagt
tttttgtttacattttctgctgctatgttttgtttttgttt Run BLAST on NCBI protein sequence of TCONS_00040140-protein >TCONS_00040140-protein ID=TCONS_00040140-protein|Name=TCONS_00040140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
KQKQNIAAENVNKKLQTDCCQANHRNKKLKIMSLRDVREQILFAHNNGVI
DDEEFIALFDLNRSRNPDFPYWKYDPFDLDKLSDDECLAMFRFLKNDIYN
LADVFQLPDKIYCPNRQNFDKVEALCILLRRFAYPSRLGDLISLFGRSVP
ELSNVVSTMTNYIYWHFGHLLTDMNQPWLSRAKLADYANAIHQAGAALEN
CWAFVDGTVRPCSRPGENQRVVYNGHKRIHAIKFQSLVTPNGMIAQLHGP
FEGKKHDSSMLVESGLYNQLMNNSFSPNGDILCIYGDPAYPLRAHLQRPF
QGARLTPLQSLFNKSMSSVRVSVEWVFGDIVNYFKFLDYKKNLKLGLSPI
GKMYLVCGLLHNARTILYDNTTAKYFNYVE Run BLAST on NCBI transcript from alignment at sc0002324:5888..7028 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040140 ID=TCONS_00040140|Name=TCONS_00040140|organism=Clytia hemisphaerica|type=transcript|length=1141bp|location=Sequence derived from alignment at sc0002324:5888..7028 (Clytia hemisphaerica)
aaacaaaaacaaaacatagcagcagaaaatgtaaacaaaaaacttcAGAC
TGACTGCTGTCAGGCAAatcatagaaataaaaaattgaaaatcatgtCTT
TGAGAGATGTCAGAGAACAGATTTTATTTGCACATAACAATGGTGTTATT
GACGATGAAGAATTTATTGCTCTATTTGACTTAAACAGGAGTAGAAACCC
AGATTTTCCATATTGGAAGTATGATCCTTTCGATCTAGATAAACTGTCAG
ATGATGAATGCTTGGCAATGTTTAGATTTTTAAAGAACGATATTTACAAC
TTGGCTGATGTCTTTCAATTACCAGACAAAATTTACTGCCCAAAtagaca
aaattttgataaagtgGAAGCACTATGCATATTGTTGAGAAGATTTGCTT
ATCCAAGTAGACTTGGAGACTTGATTTCATTATTTGGTAGATCTGTACCT
GAACTTAGCAACGTTGTGTCAACCATGACAAATTACATTTATTGGCATTT
TGGACATCTTTTAACAGATATGAACCAGCCATGGCTTTCTCGTGCAAAGT
TGGCAGACTATGCAAATGCAATTCACCAGGCAGGGGCTGCATTAGAGAAC
TGCTGGGCTTTTGTTGATGGGACTGTCCGACCATGCTCCAGACCTGGTGA
AAATCAAAGAGTGGTATATAATGGTCACAAGCGTATACACgcaataaaat
ttcaatcccTTGTTACTCCAAACGGAATGATCGCACAACTCCATGGTCCT
TTTGAAGGGAAAAAGCATGACAGCTCGATGTTAGTTGAATCTGGTCTTTA
CAACCAACTTATGAATAACAGTTTTTCACCGAACGGTGACATACTTTGTA
TTTATGGGGATCCAGCGTACCCATTACGTGCCCACCTTCAAAGACCTTTT
CAGGGTGCACGACTGACACCCCTTCAATCGCTCTTTAATAAATCCATGAG
CTCTGTCAGAGTTTCTGTTGAGTGGGTTTTTGGAGATATCGTGAATTATT
TTAAGTTTCTGGATTACAAAAAGAACTTAAAACTAGGGTTGAGCCCTATT
GGAAAGATGTATCTTGTATGTGGACTGTTACACAATGCACGCACAATTTT
GTATGATAACACAACTGCTAAATACTTCAACTACGTGGAAA Coding sequence (CDS) from alignment at sc0002324:5888..7028 >TCONS_00040140 ID=TCONS_00040140|Name=TCONS_00040140|organism=Clytia hemisphaerica|type=CDS|length=1140bp|location=Sequence derived from alignment at sc0002324:5888..7028 (Clytia hemisphaerica)
aaacaaaaacaaaacatagcagcagaaaatgtaaacaaaaaacttcAGAC
TGACTGCTGTCAGGCAAatcatagaaataaaaaattgaaaatcatgtCTT
TGAGAGATGTCAGAGAACAGATTTTATTTGCACATAACAATGGTGTTATT
GACGATGAAGAATTTATTGCTCTATTTGACTTAAACAGGAGTAGAAACCC
AGATTTTCCATATTGGAAGTATGATCCTTTCGATCTAGATAAACTGTCAG
ATGATGAATGCTTGGCAATGTTTAGATTTTTAAAGAACGATATTTACAAC
TTGGCTGATGTCTTTCAATTACCAGACAAAATTTACTGCCCAAAtagaca
aaattttgataaagtgGAAGCACTATGCATATTGTTGAGAAGATTTGCTT
ATCCAAGTAGACTTGGAGACTTGATTTCATTATTTGGTAGATCTGTACCT
GAACTTAGCAACGTTGTGTCAACCATGACAAATTACATTTATTGGCATTT
TGGACATCTTTTAACAGATATGAACCAGCCATGGCTTTCTCGTGCAAAGT
TGGCAGACTATGCAAATGCAATTCACCAGGCAGGGGCTGCATTAGAGAAC
TGCTGGGCTTTTGTTGATGGGACTGTCCGACCATGCTCCAGACCTGGTGA
AAATCAAAGAGTGGTATATAATGGTCACAAGCGTATACACgcaataaaat
ttcaatcccTTGTTACTCCAAACGGAATGATCGCACAACTCCATGGTCCT
TTTGAAGGGAAAAAGCATGACAGCTCGATGTTAGTTGAATCTGGTCTTTA
CAACCAACTTATGAATAACAGTTTTTCACCGAACGGTGACATACTTTGTA
TTTATGGGGATCCAGCGTACCCATTACGTGCCCACCTTCAAAGACCTTTT
CAGGGTGCACGACTGACACCCCTTCAATCGCTCTTTAATAAATCCATGAG
CTCTGTCAGAGTTTCTGTTGAGTGGGTTTTTGGAGATATCGTGAATTATT
TTAAGTTTCTGGATTACAAAAAGAACTTAAAACTAGGGTTGAGCCCTATT
GGAAAGATGTATCTTGTATGTGGACTGTTACACAATGCACGCACAATTTT
GTATGATAACACAACTGCTAAATACTTCAACTACGTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040140-exon-sc0002324-1491911889:5888..7028 | TCONS_00040140-exon-sc0002324-1491911889:5888..7028 | Clytia hemisphaerica | exon |
| TCONS_00040140-exon-sc0002324-1510915933:5888..7028 | TCONS_00040140-exon-sc0002324-1510915933:5888..7028 | Clytia hemisphaerica | exon |
| TCONS_00040140-exon-sc0002324-1575043694:5888..7028 | TCONS_00040140-exon-sc0002324-1575043694:5888..7028 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002324 | supercontig | sc0002324:5888..7028 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027806 | HARBI1_dom |
Blast
The following BLAST results are available for this feature:
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