TCONS_00040139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040139
Unique NameTCONS_00040139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040139 ID=TCONS_00040139|Name=TCONS_00040139|organism=Clytia hemisphaerica|type=transcript|length=1459bp
aaaattgaaacagaaattttttatttgatttagtTCTGCGGTGATAATGT
CGATATGGAAGTCATTGTGAGGCATCAAGGACTTGGCAATCCTAACAGAA
GTCATCACTGGTTTCATACAATGGCTGTCAAATCACGAGTTTTAAAAAAA
GATGGTAATAGCTTTAGTTATATTATTAGTTCTTCTTACAGTTCTATCAA
CTATCGTTTTCGGTAAAATGTAACAGATTAAAAACaggttaaaaacaaaa
tttataaaaacaactAAATCTATTCTTTAGATTTCAGAACACCAGACGAA
TACACCAAAATGAGGCTGCTACCAACGAAAAACACAAGTCGCGTGTTAAT
GGAAAGCTTCAAAATCTTATTTGCAAGAATGTTGGTCGATTTCCTACCAG
CATTCAAATGTTTCACGAAAAATGTTACAAGACACATCAGCCATCCATTT
TCGAAAAAGATGAACGAAAAATCTGATGttGTTTCTCTTGGTGTTATTTT
CGAAGGTGAACAATCGTCCTCCGGAATTGCAGAAATCTCAAAGCAAATTC
AAGAAagGTATACTCCCGTGAAGATAAATGAAGATGGAAAAACCGAGATT
TTGAAACCAATTCTAGTAGTCGGAGATCAATTGACCGAAGAACGTTTCTC
CAACATCAAAAAGGCCTTTCAAGCAGGAGATACATCATTTACCAGGCTGG
AAGGAATTCAACCTGCCTTTACTGATTGGCACTTATTAAAAACCCTTTTT
GAGaTCAAAGATAAAATCTTCAGAAAAGATTCATCATCAGAATTTGGGAC
GTCGACTTGGTCAATTAATGTTTTGCAAACTGTCAATGCAAAGAAAGACC
CTCACAAAAATTACAATTCATATAAAGAGTACTCAGATAAAGAACTTAGT
GCTGAAGCAGTTGCAATGACAATGACATATTTTAACATGAAAAACTTATG
TGATAATAAAAATgtttccaaaaatacaaaacaattaCTTCTGttctatc
aaaaagctaaatatataataaaaatcACTTCTTTTCCTAGATGACCCTGT
TCCCAATGATATTAAAGAAACGCAGGACGAGGAGAAGAAATTCAACTGGC
TATATGGACATGTTGAAAACATCATTAAAAAATACGTTGTCACTTACCAG
GCTGATCAAAGTGCATTGAATCCAAAATCGACAAACCGAAGGATTTTTCG
ATGTCACAAAAAAGATTGTAAGTCTTGTACACGCATAAAAAGGCAAGAAA
CAAGCATGAGAAGCAGGTTCATGGGTACACAAGGtaaataaaatttgttt
taaaattgcttagtgtcaagaaaaacaaaccaaattaaaaactatttaac
taaaaataattaacttcaaaatcaaaatagttTCACACTTCTTATTTTAC
AGAAAAAGGAAGGACAAACTTTCAACAAAACGAATGGATTGTGACGTTCT
AAATAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00040139-protein

>TCONS_00040139-protein ID=TCONS_00040139-protein|Name=TCONS_00040139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MRLLPTKNTSRVLMESFKILFARMLVDFLPAFKCFTKNVTRHISHPFSKK
MNEKSDVVSLGVIFEGEQSSSGIAEISKQIQERYTPVKINEDGKTEILKP
ILVVGDQLTEERFSNIKKAFQAGDTSFTRLEGIQPAFTDWHLLKTLFEIK
DKIFRKDSSSEFGTSTWSINVLQTVNAKKDPHKNYNSYKEYSDKELSAEA
VAMTMTYFNMKNLCDNKNVSKNTKQLLLFYQKAKYIIKITSFPR
Run BLAST on NCBI

transcript from alignment at sc0002324:16672..18635-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040139 ID=TCONS_00040139|Name=TCONS_00040139|organism=Clytia hemisphaerica|type=transcript|length=1964bp|location=Sequence derived from alignment at sc0002324:16672..18635- (Clytia hemisphaerica)
AAAATTGAAACAGAAATTTTTTATTTGATTTAGTTCTGCGGTGATAATGT
CGATATGGAAGTCATTGTGAGGCATCAAGGACTTGGCAATCCTAACAGAA
GTCATCACTGGTTTCATACAATGGCTGTCAAATCACGAGTTTTAAAAAAA
GATGGTAATAGCTTTAGTTATATTATTAGTTCTTCTTACAGTTCTATCAA
CTATCGTTTTCGGTAAAATGTAACAGATTAAAAACAGGTTAAAAACAAAA
TTTATAAAAACAACTAAATCTATTCTTTAGATTTCAGAACACCAGACGAA
TACACCAAAATGAGGCTGCTACCAACGAAAAACACAAGTCGCGTGTTAAT
GGAAAGCTTCAAAATCTTATTTGCAAGAATGTTGGTCGATTTCCTACCAG
CATTCAAATGTTTCACGAAAAATGTTACAAGACACATCAGCCATCCATTT
TCGAAAAAGATGAACGAAAAATCTGATGTTGTAAGAAAATATATTTTTGC
TTAAACGCTTTAGGGGGGTCTATCTGCCTGACAGTCACATATCTTAAAAA
TAATTTAAAGAATCAGTAATTTTTTAATTCATAAAAATGCACTTTACATA
CGCTAATAAAAACAAGTAATTTGTTTGCAGGTTTCTCTTGGTGTTATTTT
CGAAGGTGAACAATCGTCCTCCGGAATTGCAGAAATCTCAAAGCAAATTC
AAGAAAGGTAAAAACATAAATATATAACAATAGCTAGAATTTTAAAACAT
ATTTGTCCCTAATCAGACTGAGATTGTCAAAACACTAAAAATATTGTTAA
AAACATTACTGTGATTTATAGGTATACTCCCGTGAAGATAAATGAAGATG
GAAAAACCGAGATTTTGAAACCAATTCTAGTAGTCGGAGATCAATTGACC
GAAGAACGTTTCTCCAACATCAAAAAGGCCTTTCAAGCAGGAGATACATC
ATTTACCAGGCTGGAAGGAATTCAACCTGCCTTTACTGATTGGCACTTAT
TAAAAACCCTTTTTGAGGCAAGTTAAATTTGCTTTCCATAATAATGAATT
TAATTATAAAGTTTATGCGAAATAAGTGTAAAAATTCTATAAAAACAATT
ACTCTTGTACATCTACTTAATCTTAAAGTTTTTTTTCTCTTCAGATCAAA
GATAAAATCTTCAGAAAAGATTCATCATCAGAATTTGGGACGTCGACTTG
GTCAATTAATGTTTTGCAAACTGTCAATGCAAAGAAAGACCCTCACAAAA
ATTACAATTCATATAAAGAGTACTCAGATAAAGAACTTAGTGCTGAAGCA
GTTGCAATGACAATGACATATTTTAACATGAAAAACTTATGTGATAATAA
AAATGTTTCCAAAAATACAAAACAATTACTTCTGTTCTATCAAAAAGCTA
AATATATAATAAAAATCACTTCTTTTCCTAGATGACCCTGTTCCCAATGA
TATTAAAGAAACGCAGGACGAGGAGAAGAAATTCAACTGGCTATATGGAC
ATGTTGAAAACATCATTAAAAAGCAAGCTTCAAATTACTTGTAATAAAAT
TTTAAAAGCAAGTAACAGGGCATAATTAGTTTTTAAATTCTTATTTTATT
ATCTATCCAATTAACAACAAGACTATTTATTTTTAGATACGTTGTCACTT
ACCAGGCTGATCAAAGTGCATTGAATCCAAAATCGACAAACCGAAGGATT
TTTCGATGTCACAAAAAAGATTGTAAGTCTTGTACACGCATAAAAAGGCA
AGAAACAAGCATGAGAAGCAGGTTCATGGGTACACAAGGTAAATAAAATT
TGTTTTAAAATTGCTTAGTGTCAAGAAAAACAAACCAAATTAAAAACTAT
TTAACTAAAAATAATTAACTTCAAAATCAAAATAGTTTCACACTTCTTAT
TTTACAGAAAAAGGAAGGACAAACTTTCAACAAAACGAATGGATTGTGAC
GTTCTAAATAAAAC

Coding sequence (CDS) from alignment at sc0002324:16672..18635-

>TCONS_00040139 ID=TCONS_00040139|Name=TCONS_00040139|organism=Clytia hemisphaerica|type=CDS|length=2940bp|location=Sequence derived from alignment at sc0002324:16672..18635- (Clytia hemisphaerica)
ATCAAAGATAAAATCTTCAGAAAAGATTCATCATCAGAATTTGGGACGTC
GACTTGGTCAATTAATGTTTTGCAAACTGTCAATGCAAAGAAAGACCCTC
ACAAAAATTACAATTCATATAAAGAGTACTCAGATAAAGAACTTAGTGCT
GAAGCAGTTGCAATGACAATGACATATTTTAACATGAAAAACTTATGTGA
TAATAAAAATGTTTCCAAAAATACAAAACAATTACTTCTGTTCTATCAAA
AAGCTAAATATATAATAAAAATCACTTCTTTTCCTAGATGAGTATACTCC
CGTGAAGATAAATGAAGATGGAAAAACCGAGATTTTGAAACCAATTCTAG
TAGTCGGAGATCAATTGACCGAAGAACGTTTCTCCAACATCAAAAAGGCC
TTTCAAGCAGGAGATACATCATTTACCAGGCTGGAAGGAATTCAACCTGC
CTTTACTGATTGGCACTTATTAAAAACCCTTTTTGAGGTTTCTCTTGGTG
TTATTTTCGAAGGTGAACAATCGTCCTCCGGAATTGCAGAAATCTCAAAG
CAAATTCAAGAAAGATGAGGCTGCTACCAACGAAAAACACAAGTCGCGTG
TTAATGGAAAGCTTCAAAATCTTATTTGCAAGAATGTTGGTCGATTTCCT
ACCAGCATTCAAATGTTTCACGAAAAATGTTACAAGACACATCAGCCATC
CATTTTCGAAAAAGATGAACGAAAAATCTGATGTTATCAAAGATAAAATC
TTCAGAAAAGATTCATCATCAGAATTTGGGACGTCGACTTGGTCAATTAA
TGTTTTGCAAACTGTCAATGCAAAGAAAGACCCTCACAAAAATTACAATT
CATATAAAGAGTACTCAGATAAAGAACTTAGTGCTGAAGCAGTTGCAATG
ACAATGACATATTTTAACATGAAAAACTTATGTGATAATAAAAATGTTTC
CAAAAATACAAAACAATTACTTCTGTTCTATCAAAAAGCTAAATATATAA
TAAAAATCACTTCTTTTCCTAGATGAGTATACTCCCGTGAAGATAAATGA
AGATGGAAAAACCGAGATTTTGAAACCAATTCTAGTAGTCGGAGATCAAT
TGACCGAAGAACGTTTCTCCAACATCAAAAAGGCCTTTCAAGCAGGAGAT
ACATCATTTACCAGGCTGGAAGGAATTCAACCTGCCTTTACTGATTGGCA
CTTATTAAAAACCCTTTTTGAGGTTTCTCTTGGTGTTATTTTCGAAGGTG
AACAATCGTCCTCCGGAATTGCAGAAATCTCAAAGCAAATTCAAGAAAGA
TGAGGCTGCTACCAACGAAAAACACAAGTCGCGTGTTAATGGAAAGCTTC
AAAATCTTATTTGCAAGAATGTTGGTCGATTTCCTACCAGCATTCAAATG
TTTCACGAAAAATGTTACAAGACACATCAGCCATCCATTTTCGAAAAAGA
TGAACGAAAAATCTGATGTTATCAAAGATAAAATCTTCAGAAAAGATTCA
TCATCAGAATTTGGGACGTCGACTTGGTCAATTAATGTTTTGCAAACTGT
CAATGCAAAGAAAGACCCTCACAAAAATTACAATTCATATAAAGAGTACT
CAGATAAAGAACTTAGTGCTGAAGCAGTTGCAATGACAATGACATATTTT
AACATGAAAAACTTATGTGATAATAAAAATGTTTCCAAAAATACAAAACA
ATTACTTCTGTTCTATCAAAAAGCTAAATATATAATAAAAATCACTTCTT
TTCCTAGATGAGTATACTCCCGTGAAGATAAATGAAGATGGAAAAACCGA
GATTTTGAAACCAATTCTAGTAGTCGGAGATCAATTGACCGAAGAACGTT
TCTCCAACATCAAAAAGGCCTTTCAAGCAGGAGATACATCATTTACCAGG
CTGGAAGGAATTCAACCTGCCTTTACTGATTGGCACTTATTAAAAACCCT
TTTTGAGGTTTCTCTTGGTGTTATTTTCGAAGGTGAACAATCGTCCTCCG
GAATTGCAGAAATCTCAAAGCAAATTCAAGAAAGATGAGGCTGCTACCAA
CGAAAAACACAAGTCGCGTGTTAATGGAAAGCTTCAAAATCTTATTTGCA
AGAATGTTGGTCGATTTCCTACCAGCATTCAAATGTTTCACGAAAAATGT
TACAAGACACATCAGCCATCCATTTTCGAAAAAGATGAACGAAAAATCTG
ATGTTATCAAAGATAAAATCTTCAGAAAAGATTCATCATCAGAATTTGGG
ACGTCGACTTGGTCAATTAATGTTTTGCAAACTGTCAATGCAAAGAAAGA
CCCTCACAAAAATTACAATTCATATAAAGAGTACTCAGATAAAGAACTTA
GTGCTGAAGCAGTTGCAATGACAATGACATATTTTAACATGAAAAACTTA
TGTGATAATAAAAATGTTTCCAAAAATACAAAACAATTACTTCTGTTCTA
TCAAAAAGCTAAATATATAATAAAAATCACTTCTTTTCCTAGATGAGTAT
ACTCCCGTGAAGATAAATGAAGATGGAAAAACCGAGATTTTGAAACCAAT
TCTAGTAGTCGGAGATCAATTGACCGAAGAACGTTTCTCCAACATCAAAA
AGGCCTTTCAAGCAGGAGATACATCATTTACCAGGCTGGAAGGAATTCAA
CCTGCCTTTACTGATTGGCACTTATTAAAAACCCTTTTTGAGGTTTCTCT
TGGTGTTATTTTCGAAGGTGAACAATCGTCCTCCGGAATTGCAGAAATCT
CAAAGCAAATTCAAGAAAGATGAGGCTGCTACCAACGAAAAACACAAGTC
GCGTGTTAATGGAAAGCTTCAAAATCTTATTTGCAAGAATGTTGGTCGAT
TTCCTACCAGCATTCAAATGTTTCACGAAAAATGTTACAAGACACATCAG
CCATCCATTTTCGAAAAAGATGAACGAAAAATCTGATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024347XLOC_024347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040139-exon-sc0002324-1575043694:18156..18635TCONS_00040139-exon-sc0002324-1575043694:18156..18635Clytia hemisphaericaexon
TCONS_00040139-exon-sc0002324-1575043694:17929..18005TCONS_00040139-exon-sc0002324-1575043694:17929..18005Clytia hemisphaericaexon
TCONS_00040139-exon-sc0002324-1575043694:17619..17814TCONS_00040139-exon-sc0002324-1575043694:17619..17814Clytia hemisphaericaexon
TCONS_00040139-exon-sc0002324-1575043694:17114..17491TCONS_00040139-exon-sc0002324-1575043694:17114..17491Clytia hemisphaericaexon
TCONS_00040139-exon-sc0002324-1575043694:16672..16999TCONS_00040139-exon-sc0002324-1575043694:16672..16999Clytia hemisphaericaexon
TCONS_00040139-exon-sc0002324-1510915933:18156..18635TCONS_00040139-exon-sc0002324-1510915933:18156..18635Clytia hemisphaericaexon
TCONS_00040139-exon-sc0002324-1510915933:17929..18005TCONS_00040139-exon-sc0002324-1510915933:17929..18005Clytia hemisphaericaexon
TCONS_00040139-exon-sc0002324-1510915933:17619..17814TCONS_00040139-exon-sc0002324-1510915933:17619..17814Clytia hemisphaericaexon
TCONS_00040139-exon-sc0002324-1510915933:17114..17491TCONS_00040139-exon-sc0002324-1510915933:17114..17491Clytia hemisphaericaexon
TCONS_00040139-exon-sc0002324-1510915933:16672..16999TCONS_00040139-exon-sc0002324-1510915933:16672..16999Clytia hemisphaericaexon
TCONS_00040139-exon-sc0002324-1491911889:18156..18635TCONS_00040139-exon-sc0002324-1491911889:18156..18635Clytia hemisphaericaexon
TCONS_00040139-exon-sc0002324-1491911889:17929..18005TCONS_00040139-exon-sc0002324-1491911889:17929..18005Clytia hemisphaericaexon
TCONS_00040139-exon-sc0002324-1491911889:17619..17814TCONS_00040139-exon-sc0002324-1491911889:17619..17814Clytia hemisphaericaexon
TCONS_00040139-exon-sc0002324-1491911889:17114..17491TCONS_00040139-exon-sc0002324-1491911889:17114..17491Clytia hemisphaericaexon
TCONS_00040139-exon-sc0002324-1491911889:16672..16999TCONS_00040139-exon-sc0002324-1491911889:16672..16999Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040139-proteinTCONS_00040139-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002324supercontigsc0002324:16672..18635 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.301031	0.110708	0.0964073	0.0628797	5.01402	3.32699	1.82449	2.69874	0.482982	0.592505	0.690119	0.453657	0.188761	0.117618	0.306211	0.363202	0.458582	0.305737	0.181025	0.179687	0.508682	0.522015	0.238197	0.147929	0.3352	0.543923	1.09813	0.266167	0.346522	0.160478
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top