TCONS_00040138 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040138
Unique NameTCONS_00040138
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1123

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040138 ID=TCONS_00040138|Name=TCONS_00040138|organism=Clytia hemisphaerica|type=transcript|length=1123bp
ACCAACAACAGCTATAAAGCAGTGGGGGCTCTTTCACTCGAGTGGAAAGA
ACAAAAACGCCCTTGTCAGATTTATATGCTCAGAGTGGAAGAAAGTGAAT
TGTCTTTCACAAATAGCATCTAAAAACCTCTTCGTGACAGATGGAGAATC
GGTGTTCCATTTAACCGACCACTCATGTTCATTAGTAGAAGAGCTCACCA
GTAACCACGAAGAAGCAGACACCCGTATGGTTTTGCACGCTAAGCATGCA
AGTGAAACGTCTGAACAAGTTCTCATCTCAAGTCCAGATACAGATGTATT
TGTAATTTGTCTTGGGATGCAACATATGATTAATGCCAATGTATTTTTCC
TCACCGGAGTGAAGAATTCCAGAAGAATTATTGACATCACAGCCGTTGCA
GAAAATGTAAATACGTCATTGAACCAATGCGAAGCTTCCAAAGATTTGAT
CCTGGAGTCATTGATCGGCCTCCATAGCTTCACTGGTTGTGACACCATTA
GTGCTTTCGCTGGGAAGGGGAAAGTCAAACCATTGAATTTGATGATGAAG
GATATACGCTACGTGGAAGCTTTTTCTCAGCTGGGGAAGACTATCAATAT
AGATAACAAGATTAAAGATCAGTTGAAGCAATTTGTTTGTCACTTATACG
GTTGGAGACAAACCAAGTCACTGCAAGACGTTAGATACAAGATGTATTGT
CAGAGTGGAGGGAAATTGTCCTGCGAAAAACTGCCACCGTGTGACGATGT
CCTCGAGCTACACATCATCAGAGCCAACTACCAAGCTTTCATTTGGCGAC
AAAGCTTGGTCACACAGCAGCAACAAGACGTTCCAACAGAAAATGGTTGG
CTTTTGAATGAAGATGGGTCTTACGATATTGAGTGGATGAGATGCAACCC
TGCACCCGATGAGATCCTTGAGCTGGTATCTTGTGACTGTAAGAAGAAAT
GTGACGAAAACAGTTGTTCATGTGCAGTCAATAACTTGAAGTGTACAGAT
ATTTGCTCTTGTAATGATTGTGGCAATATTGAAGCGATAGAAGTTGATGA
GGAAATGATGGATGAATACGATGATTATTATGATTCAGAAGAtgatgaaa
attaaaatttgaagctGCTTGAA
Run BLAST on NCBI

protein sequence of TCONS_00040138-protein

>TCONS_00040138-protein ID=TCONS_00040138-protein|Name=TCONS_00040138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
PTTAIKQWGLFHSSGKNKNALVRFICSEWKKVNCLSQIASKNLFVTDGES
VFHLTDHSCSLVEELTSNHEEADTRMVLHAKHASETSEQVLISSPDTDVF
VICLGMQHMINANVFFLTGVKNSRRIIDITAVAENVNTSLNQCEASKDLI
LESLIGLHSFTGCDTISAFAGKGKVKPLNLMMKDIRYVEAFSQLGKTINI
DNKIKDQLKQFVCHLYGWRQTKSLQDVRYKMYCQSGGKLSCEKLPPCDDV
LELHIIRANYQAFIWRQSLVTQQQQDVPTENGWLLNEDGSYDIEWMRCNP
APDEILELVSCDCKKKCDENSCSCAVNNLKCTDICSCNDCGNIEAIEVDE
EMMDEYDDYYDSEDDEN
Run BLAST on NCBI

transcript from alignment at sc0002324:185..1444+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040138 ID=TCONS_00040138|Name=TCONS_00040138|organism=Clytia hemisphaerica|type=transcript|length=1260bp|location=Sequence derived from alignment at sc0002324:185..1444+ (Clytia hemisphaerica)
ACCAACAACAGCTATAAAGCAGTGGGGGCTCTTTCACTCGAGTGGAAAGA
ACAAAAACGCCCTTGTCAGATTTATATGCTCAGAGTGGAAGAAAGTGAAT
TGTCTTTCACAAATAGCATCTAAAAACCTCTTCGTGACAGATGGAGAATC
GGTGTTCCATTTAACCGACCACTCATGTTCATTAGTAGAAGAGCTCACCA
GTAACCACGAAGAAGCAGACACCCGTATGGTTTTGCACGCTAAGCATGCA
AGTGAAACGTCTGAACAAGTTCTCATCTCAAGTCCAGATACAGATGTATT
TGTAATTTGTCTTGGGATGCAACATATGATTAATGCCAATGTATTTTTCC
TCACCGGAGTGAAGAATTCCAGAAGAATTATTGACATCACAGCCGTTGCA
GAAAATGTAAATACGTCATTGAACCAATGCGAAGCTTCCAAAGATTTGAT
CCTGGAGTCATTGATCGGCCTCCATAGCTTCACTGGTTGTGACACCATTA
GTGCTTTCGCTGGGAAGGGGAAAGTCAAACCATTGAATTTGATGATGAAG
GATATACGCTACGTGGAAGCTTTTTCTCAGCTGGGGAAGACTATCAATAT
AGATAACAAGATTAAAGATCAGTTGAAGCAATTTGTTTGTCACTTATACG
GTTGGAGACAAACCAAGTCACTGCAAGACGTTAGATACAAGATGTATTGT
CAGAGTGGAGGGAAATTGTCCTGCGAAAAACTGCCACCGTGTGACGATGT
CCTCGAGCTACACATCATCAGAGCCAACTACCAAGCTTTCATTTGGCGAC
AAAGCTTGGTCACACAGCAGCAACAAGACGTTCCAACAGAAAATGGTTGG
CTTTTGAATGAAGATGGGTCTTACGATATTGAGTGGATGAGATGCAACCC
TGCACCCGATGAGGTAATTGTCATTACTATCTTTGATATGAAAAGGTATC
TGAGAAAAGTTACATTTATATCATCTTAGAGTCTACTATTCTATTTTTCT
ATGTTGTTAACTCATCTGACACGTTCCCCCAAATTTTTATACTCTTTTAG
ATCCTTGAGCTGGTATCTTGTGACTGTAAGAAGAAATGTGACGAAAACAG
TTGTTCATGTGCAGTCAATAACTTGAAGTGTACAGATATTTGCTCTTGTA
ATGATTGTGGCAATATTGAAGCGATAGAAGTTGATGAGGAAATGATGGAT
GAATACGATGATTATTATGATTCAGAAGAtgatgaaaattaaaatttgaa
gctGCTTGAA

Coding sequence (CDS) from alignment at sc0002324:185..1444+

>TCONS_00040138 ID=TCONS_00040138|Name=TCONS_00040138|organism=Clytia hemisphaerica|type=CDS|length=2208bp|location=Sequence derived from alignment at sc0002324:185..1444+ (Clytia hemisphaerica)
CCAACAACAGCTATAAAGCAGTGGGGGCTCTTTCACTCGAGTGGAAAGAA
CAAAAACGCCCTTGTCAGATTTATATGCTCAGAGTGGAAGAAAGTGAATT
GTCTTTCACAAATAGCATCTAAAAACCTCTTCGTGACAGATGGAGAATCG
GTGTTCCATTTAACCGACCACTCATGTTCATTAGTAGAAGAGCTCACCAG
TAACCACGAAGAAGCAGACACCCGTATGGTTTTGCACGCTAAGCATGCAA
GTGAAACGTCTGAACAAGTTCTCATCTCAAGTCCAGATACAGATGTATTT
GTAATTTGTCTTGGGATGCAACATATGATTAATGCCAATGTATTTTTCCT
CACCGGAGTGAAGAATTCCAGAAGAATTATTGACATCACAGCCGTTGCAG
AAAATGTAAATACGTCATTGAACCAATGCGAAGCTTCCAAAGATTTGATC
CTGGAGTCATTGATCGGCCTCCATAGCTTCACTGGTTGTGACACCATTAG
TGCTTTCGCTGGGAAGGGGAAAGTCAAACCATTGAATTTGATGATGAAGG
ATATACGCTACGTGGAAGCTTTTTCTCAGCTGGGGAAGACTATCAATATA
GATAACAAGATTAAAGATCAGTTGAAGCAATTTGTTTGTCACTTATACGG
TTGGAGACAAACCAAGTCACTGCAAGACGTTAGATACAAGATGTATTGTC
AGAGTGGAGGGAAATTGTCCTGCGAAAAACTGCCACCGTGTGACGATGTC
CTCGAGCTACACATCATCAGAGCCAACTACCAAGCTTTCATTTGGCGACA
AAGCTTGGTCACACAGCAGCAACAAGACGTTCCAACAGAAAATGGTTGGC
TTTTGAATGAAGATGGGTCTTACGATATTGAGTGGATGAGATGCAACCCT
GCACCCGATGAGATCCTTGAGCTGGTATCTTGTGACTGTAAGAAGAAATG
TGACGAAAACAGTTGTTCATGTGCAGTCAATAACTTGAAGTGTACAGATA
TTTGCTCTTGTAATGATTGTGGCAATATTGAAGCGATAGAAGTTGATGAG
GAAATGATGGATGAATACGATGATTATTATGATTCAGAAGAtgatgaaaa
ttaaCCAACAACAGCTATAAAGCAGTGGGGGCTCTTTCACTCGAGTGGAA
AGAACAAAAACGCCCTTGTCAGATTTATATGCTCAGAGTGGAAGAAAGTG
AATTGTCTTTCACAAATAGCATCTAAAAACCTCTTCGTGACAGATGGAGA
ATCGGTGTTCCATTTAACCGACCACTCATGTTCATTAGTAGAAGAGCTCA
CCAGTAACCACGAAGAAGCAGACACCCGTATGGTTTTGCACGCTAAGCAT
GCAAGTGAAACGTCTGAACAAGTTCTCATCTCAAGTCCAGATACAGATGT
ATTTGTAATTTGTCTTGGGATGCAACATATGATTAATGCCAATGTATTTT
TCCTCACCGGAGTGAAGAATTCCAGAAGAATTATTGACATCACAGCCGTT
GCAGAAAATGTAAATACGTCATTGAACCAATGCGAAGCTTCCAAAGATTT
GATCCTGGAGTCATTGATCGGCCTCCATAGCTTCACTGGTTGTGACACCA
TTAGTGCTTTCGCTGGGAAGGGGAAAGTCAAACCATTGAATTTGATGATG
AAGGATATACGCTACGTGGAAGCTTTTTCTCAGCTGGGGAAGACTATCAA
TATAGATAACAAGATTAAAGATCAGTTGAAGCAATTTGTTTGTCACTTAT
ACGGTTGGAGACAAACCAAGTCACTGCAAGACGTTAGATACAAGATGTAT
TGTCAGAGTGGAGGGAAATTGTCCTGCGAAAAACTGCCACCGTGTGACGA
TGTCCTCGAGCTACACATCATCAGAGCCAACTACCAAGCTTTCATTTGGC
GACAAAGCTTGGTCACACAGCAGCAACAAGACGTTCCAACAGAAAATGGT
TGGCTTTTGAATGAAGATGGGTCTTACGATATTGAGTGGATGAGATGCAA
CCCTGCACCCGATGAGATCCTTGAGCTGGTATCTTGTGACTGTAAGAAGA
AATGTGACGAAAACAGTTGTTCATGTGCAGTCAATAACTTGAAGTGTACA
GATATTTGCTCTTGTAATGATTGTGGCAATATTGAAGCGATAGAAGTTGA
TGAGGAAATGATGGATGAATACGATGATTATTATGATTCAGAAGAtgatg
aaaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024346XLOC_024346Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040138-proteinTCONS_00040138-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040138-exon-sc0002324-1491911889:185..1097TCONS_00040138-exon-sc0002324-1491911889:185..1097Clytia hemisphaericaexon
TCONS_00040138-exon-sc0002324-1510915933:185..1097TCONS_00040138-exon-sc0002324-1510915933:185..1097Clytia hemisphaericaexon
TCONS_00040138-exon-sc0002324-1575043694:185..1097TCONS_00040138-exon-sc0002324-1575043694:185..1097Clytia hemisphaericaexon
TCONS_00040138-exon-sc0002324-1491911889:1235..1444TCONS_00040138-exon-sc0002324-1491911889:1235..1444Clytia hemisphaericaexon
TCONS_00040138-exon-sc0002324-1510915933:1235..1444TCONS_00040138-exon-sc0002324-1510915933:1235..1444Clytia hemisphaericaexon
TCONS_00040138-exon-sc0002324-1575043694:1235..1444TCONS_00040138-exon-sc0002324-1575043694:1235..1444Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002324supercontigsc0002324:185..1444 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.113347	0.151407	0.423992	0.36115	3.15115	3.20213	3.65817	4.48077	3.42352	2.36109	1.81357	2.23796	0.64946	0.488997	0.514899	0.591333	0.0850895	0.358398	1.03155	0.994662	0.638	0.768833	0.934617	0.728316	1.58205	0.977498	0	0	0	0.128177
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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