TCONS_00040133 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040133
Unique NameTCONS_00040133
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040133 ID=TCONS_00040133|Name=TCONS_00040133|organism=Clytia hemisphaerica|type=transcript|length=462bp
ACAAGAATGCCGACACCGACTTTTCCAACAACGGACAACCAAATGGTGAC
GTCGCCGACACAAGGTACCATGTCTCTTGACCGAAATGTCGGACGGCAAG
TGGGTAGCCAAGTTAAAAGCAAAGACTCAAATGAGAAGCTAAGgTCGGAA
AGTCTCACAGAAGAAGAGTCTCCTGGTGATAAACCAGAGCTGTCCTCGCC
GAATTCAACGAGCAGTCATACTTCGTCAGATTCAAACCAAGCTGGTGAGG
TTGTATTCGAAGGCATTGCAAAACGTGGATCCTTGAAACAAAGGAATAcT
GAAAGTTGTATAAGGCATTGGCGAGCCTCGACCCCTAAGCATGAAAAGAA
GTTCGGAACAGTTCCTAAATAGTAAATAAAGTGAATATTTTAGTATCGaa
gtatttttttagaaaatttcgtAAGTCGCTTGACCAGCATTGCTAATTTA
TCTGAAATCGAG
Run BLAST on NCBI

transcript from alignment at sc0002320:9340..14097+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040133 ID=TCONS_00040133|Name=TCONS_00040133|organism=Clytia hemisphaerica|type=transcript|length=4758bp|location=Sequence derived from alignment at sc0002320:9340..14097+ (Clytia hemisphaerica)
ACAAGAATGCCGACACCGACTTTTCCAACAACGGACAACCAAATGGTGAC
GTCGCCGACACAAGGTACCATGTCTCTTGACCGAAATGTCGGACGGCAAG
TGGGTAGCCAAGTTAAAAGCAAAGACTCAAATGAGAAGCTAAGGTATGAA
CATTTTTCTGTGATAGACAATAAAGAAATCTATTACAGTGACAGTGAGGA
AGGTATTTGCTTAtcaaaagttttgagaaaaggTTTGTCCTAAAAGGGTT
AGGGGGCCTTAAAAGTAAAGTACACTACTTCTTCCGGCACAGACTTAAAA
CTCTCTTTCAAACTTTTGTAGCACTTAACAGTTAAGAGCTGAGTTATGGT
ATATAAAAGTTTAATCCAATCTTctattctttgttgtttgtttgtAATAT
TTTAGTAGAAAGAATAGTTTGATGCGAAGAATGTCATCCTTCTTTGGAAG
AAACAAGAGGTAAATCAATGAgaagtttgtttactttataaattTACCAC
TTAGCTAGTATGTATCTTTGTATCAGCAGAGTTTAGGTTGCAGCTTTTGT
TCTCAGTTTAGAAGTACATGTGAAACagtaaattttaacttttttttcta
gATTGTCAGGCTTAATGCTTCCTTTATTCACTTATTCGCTTAAAATGAGA
TCAAATTCAGCATTGGGCTTTTTCTAAAATCTAAAGCTGGGGTGCTGCTT
AATTTATCATTAAGCCAAAATTGAATGTCGTGTTCTTATGAAACAAGCAT
GTATAGGCTTTCAGCAGAAACATTTTAAATCATGAATATAACTGAtattc
tttttcataattttgttgttttcaggTCGGAAAGTCTCACAGAAGAAGAG
GTTTGCTATGCTTATAATGTTCATATTCTTTCCCACTATATATTTTtctg
ttcttctttttttttcttttaacttcTAATGACATTAATTCTAAACCGTT
GAATAACTAAGAATAACCGGAACTAAACCTTACTAACTAAAATCTTACTA
GTTGTAATTCACATATACTAATCGAAATTTATTAACTGTCAATTCAAACA
CACTACTACTAAAACCAAAAATCGTTACAGTTGCCTCgctctaattcgaa
tttctattattcaaatttaTCTGTAATTTGAGCTAAAACATTGGTCCCCT
TTCGCAGTTGAAAAGTAGTGTAAAATACTGTAATTCGACTATTTCTATAA
CTCAAAGAAACGTCTTGCTTTaagatcgaataagagagagagagtcaact
gtacgcAATTAATGTTTTTCGGTCTCACTGAAACCCTATAGTTGCCGAAA
TAAAATAAGTGAAAACATAGGGTAAACTTGTAAACCTACTCTTTTTTAGA
CATCACTGGGTGTTTACAAACGCTAATATAAACTAACCTGCTTGCTAACC
AAAATATTCATCGACTAGAaatacattttcaaatttaactcTAACTAACA
AATCATACCTCCAAAAGaagtcaaaattttaaaatgttaaattctttttc
cagaaaTTAAATAACATTGCAGCACGCAAAGAAcaattgttaaaaaataa
agaagaaataaTCAAGTCTAGACAACGCTTAGAACTCATTAAATCCAAAA
CTTCACAACGAGATAATAATATGCTGGTGAGTTTAAGCATAACCATAACT
TTCAAATTCAAGAAAGCTTTCCCTATTGGTGCATATGAAAGTGGCATCTC
CAGAGAGTCATGTGTGTAAAAATCTCTTTCTCAAAATGCCTTGTCTTACG
AAAGACCAGAGAGTTTGAGTTTATCTCGAGTATGCCAGAATTAATAATAC
TTTCCCAACGGAtaaattttcttcataaaaaattgtGTCAGTAATTTGCG
CCACCTGACCCTTTAACTGTATCACTTTTCTGCTCGTTTCCTTTAAAAAA
TGTAGATAAAAACGATCCGCCATCTTTTTAAAAAANAGTTTAAGCATAAC
CATAACTTTCAAATTCAAGAAGGCCGTCCCTATTGGTGCATATGAAAGTG
ACATCTCCAGAGAGTCATGTGTGTAAAAATCTCTATCTCTTCATCAAAAT
GCCTTGTCTTACGAAAGACCAGAGAGTTTGAGTTTGTCTTGAGTATGCCA
GAATTAATAATATTTCCCCCAACGGATAAATTTTCTTCTTAAGAAATTGT
GTCAGTAATTTCGCCACCAATTTCGCCACCTGGCCCTTTAACTGTATTAC
TTTCCTGCTCGTTTCTTTTAGGAAGTGTAAATAAAAACTTTCCGTCATCT
TTTGAAAAACCAGTGTATTGTTAGGGTTAAAGGTCGTAGAGGCAGAGACA
TAGCGAAAAACTCTTTTGGCAGAACTGTGTCATCCGACCCCGCGTTTAAC
ATCTGAACCTTGATCCTCTTGGTATAGTCTTGGAAACAATTTGCAACAAA
TCTGATGAGATTATTTTGAAAGTGTTTTTATTGCGATTGAGTTGGACGCA
GTCTCACATATTTATAAATGTTCTCATTCATATATAAATTCTTTCTTCTA
GTCTCCTGGTGATAAACCAGAGCTGTCCTCGCCGGtaagaaataaatcat
tttttggcttttttcacaTATTGCTCTTTCGGAATTTTTTGGCTGGTAAA
AAAGATTCTATCCTGCTCTCAGAGCTACTTATGCTAGAGCGAGGAATTTG
AAGCTTTAACGTTGAGGcataattttcaaattcttaTACCTGGAcctaat
tttaaaatgtttacttGAAGTTAAGTTCAACTGTCATCTGTCTGGTAAAA
GAAACTGAGCTCAATATAGAACTCCATTGTTGTATTGTAAGTATGTGTCA
AAGAAAGTCATTTTCGAGTCACCCGGTATAACTATTGTAGACTGGTTCCT
TTTATCACAAAATGATAAAGTGATTCGAGGTACTAATACTTTTTATCGTT
TCCCGTTTGTTTTAGAATTCAACGAGCAGTCATACTTCGTCAGATTCAAA
CCAAGCTGGTGTAAGTATTTTTATAAAACTCTTCAATGATTGCCTTTCCA
TTATTAAAACTGTCTGATAATTGGATGGGTCACaggcaagaaacaacaaa
atttaatttatttattaataAATTTTCTCTCTACTCTATGGTAGAGCATC
TTCAGATCTTTCATAACTATTTGTAAATGCTAGATGTCATATGATAGGTT
TTTTATGAGTGTTATGATAGATCTGAAGATGCTCTACCATAGAGTAGaga
gaaaatttatcaataaataaattttttgtcgTTTCTTGCCTGTGACCTAT
CCAAATATTACAGTTTTAATAAGTCTTTTTGTCTTTAAGTCTTTTTGTCT
TTGCAACACTTAGTATGTTTTCCCTTTTGAGTTAAATGAGAAAATTATGT
GCCATTATCTCCAATCGCGAAATAAGGTTGTAAGACCATGCGTTTTTACA
CTTCGTTAAAGGGTTTGGGGACGAGTATATCAGGTTCGTTAGTGACGTAG
AATTTCTGAACCTTTCGCTATTCGTCCCTTTCAAACCCAAATGCGATTCT
CCCcaataaactttttcaaatttgaaaaaattttcattgaaaatctaAAA
GCTATGACATTTTGAAATATGAGATTAAAAAAAGGTAATTGTCGTTTCTC
AGGATAACCAAGGTTCATGAATTTAACCACTCGGTCAAAAgtataaattt
gaaatattatttgcAATTATTTGGTTGCAAAACGCAGGTTATATATTCAA
ACTTGAACGCGTTTTATGAAATGATGTAGAAAACCTACATCGCTtccaaa
gtttcaaacactaaATAAACGCATACATATgagtctagtattccttttat
TTATCTTGTCCTTTAATTTCTTCCGTAGGAGGTTGTATTCGAAGGCATTG
CAAAACGTGGATCCTTGAAACAAAGGAATAGTAAGTTTTTCTTTAGTTGA
GTGTCTTATTTCAAAGCTCTTGAATTTCGCGAATGACAGAGAAGGAATCT
TTATCCTATTAAAAGTAGTAAGGGTTTATCCAATAAATTTAGTTACCGCG
AGATTTAATTCCTTTAAAATTTGCAGAAAATTTCTCAAGTATTGGTATGT
ATAACATGTATAGATTTAGGGGAGTGTACAGCGTCATTAGTCTTTTTTCA
ACCTTCTATTTCTACATTCTTTGATGACCAGATTTTATATGAGATTTTAT
GAAGATAAAAGATATACTTCAGTTTTTGTACTGTGTTTGGAAGGTCTTTT
TGAGGTCTAAGGCATAGTGACCATTCAAAAGGTATGTACGTTCTgagagg
gggagggggtctatCGAAAAGCGTACGAAAACGTACGTGGGGAGAGGAAG
GGTCAATCAAAAAGTGTACGTatgctttaaatttttttcaaactgcttTT
ACAAGTAATTTGTGTAacgttttatttgaaaaaaactaaactaagtTTTA
AGTCTCCTTTTTCCATTTTAAAAATATCTGGAAGACGTTTTCGCACACGC
GGGGATACGTACGTACTTGGAGGGGGAGCGTACAAAGGGAAAGGGTAGtc
gaattttgtctaaatttgaGAGTACGTATTAGTTTATGAATGGTCCCATA
GTAGCTaaaattttacaattgatttgaatgatttatttttgtagcTGAAA
GTTGTATAAGGCATTGGCGAGCCTCGACCCCTAAGCATGAAAAGAAGTTC
GGAACAGTTCCTAAATAGTAAATAAAGTGAATATTTTAGTATCGaagtat
ttttttagaaaatttcgtAAGTCGCTTGACCAGCATTGCTAATTTATCTG
AAATCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024341XLOC_024341Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040133-exon-sc0002320-1491911889:9340..9482TCONS_00040133-exon-sc0002320-1491911889:9340..9482Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1510915933:9340..9482TCONS_00040133-exon-sc0002320-1510915933:9340..9482Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1575043694:9340..9482TCONS_00040133-exon-sc0002320-1575043694:9340..9482Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1491911889:10165..10189TCONS_00040133-exon-sc0002320-1491911889:10165..10189Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1510915933:10165..10189TCONS_00040133-exon-sc0002320-1510915933:10165..10189Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1575043694:10165..10189TCONS_00040133-exon-sc0002320-1575043694:10165..10189Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1491911889:11841..11873TCONS_00040133-exon-sc0002320-1491911889:11841..11873Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1510915933:11841..11873TCONS_00040133-exon-sc0002320-1510915933:11841..11873Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1575043694:11841..11873TCONS_00040133-exon-sc0002320-1575043694:11841..11873Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1491911889:12255..12299TCONS_00040133-exon-sc0002320-1491911889:12255..12299Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1510915933:12255..12299TCONS_00040133-exon-sc0002320-1510915933:12255..12299Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1575043694:12255..12299TCONS_00040133-exon-sc0002320-1575043694:12255..12299Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1491911889:13168..13219TCONS_00040133-exon-sc0002320-1491911889:13168..13219Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1510915933:13168..13219TCONS_00040133-exon-sc0002320-1510915933:13168..13219Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1575043694:13168..13219TCONS_00040133-exon-sc0002320-1575043694:13168..13219Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1491911889:13934..14097TCONS_00040133-exon-sc0002320-1491911889:13934..14097Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1510915933:13934..14097TCONS_00040133-exon-sc0002320-1510915933:13934..14097Clytia hemisphaericaexon
TCONS_00040133-exon-sc0002320-1575043694:13934..14097TCONS_00040133-exon-sc0002320-1575043694:13934..14097Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002320supercontigsc0002320:9340..14097 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.44048	3.70793	15.5771	17.8951	15.7129	12.3503	5.56049	5.89491	6.62543	8.8029	8.15382	8.89002	7.98464	3.78097	5.89199	6.58109	13.3858	9.23693	4.92291	9.81798	10.0657	9.3031	6.64497	9.2066	18.5804	15.1648	14.8835	10.976	5.3781	4.0635
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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