TCONS_00040129 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040129
Unique NameTCONS_00040129
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040129 ID=TCONS_00040129|Name=TCONS_00040129|organism=Clytia hemisphaerica|type=transcript|length=550bp
CAAATGTCAGAACTGTCGTCGAAATATCCATACCTGTTTAACAAGTTTTC
GAGTGGTCATCATGCCGTGAGGAGATCAAATCGATACTGGGCTGGTCTTT
GGTCCGATCTTGTCATTGAGCAGACACTTATGAGGTCAATAAAAAGCCGT
GGTGGATTGACAAGAGGTAGGGGAATGGAAGAGAATGTTCGTCAACTTTG
GGTTTCAAGCATGAGCTATTGTGCAGCAGTTCACGATGCCATGACAAGCT
TGACTGGAGTGAAGGCTCAAAGCAGTGATCAACACCAAGAGATGGGGTTT
TCACGCATCAAAACTGACTTCAAAGATTCTCTCAAGTTCTTTTGTTGGTT
GGAAAAACGGAACCCTTTTGTTTACGAGGATGCCCACTTACATTCCTTAT
CCTCTGGCGTAATTGCAGTTACCGGTCAAGACAACGTCAACTGTGATGAA
GCTGAGGTGGTTGGAGGGAGGATTCAAAGCTCATTAGATGGGAAATCATT
CACCGACGCTTCAATTAAACGAAAGGACGAAGTGAAGTCTCTCGCTGCCA
Run BLAST on NCBI

protein sequence of TCONS_00040129-protein

>TCONS_00040129-protein ID=TCONS_00040129-protein|Name=TCONS_00040129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
QMSELSSKYPYLFNKFSSGHHAVRRSNRYWAGLWSDLVIEQTLMRSIKSR
GGLTRGRGMEENVRQLWVSSMSYCAAVHDAMTSLTGVKAQSSDQHQEMGF
SRIKTDFKDSLKFFCWLEKRNPFVYEDAHLHSLSSGVIAVTGQDNVNCDE
AEVVGGRIQSSLDGKSFTDASIKRKDEVKSLAA
Run BLAST on NCBI

transcript from alignment at sc0002318:12016..12565

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040129 ID=TCONS_00040129|Name=TCONS_00040129|organism=Clytia hemisphaerica|type=transcript|length=550bp|location=Sequence derived from alignment at sc0002318:12016..12565 (Clytia hemisphaerica)
TGGCAGCGAGAGACTTCACTTCGTCCTTTCGTTTAATTGAAGCGTCGGTG
AATGATTTCCCATCTAATGAGCTTTGAATCCTCCCTCCAACCACCTCAGC
TTCATCACAGTTGACGTTGTCTTGACCGGTAACTGCAATTACGCCAGAGG
ATAAGGAATGTAAGTGGGCATCCTCGTAAACAAAAGGGTTCCGTTTTTCC
AACCAACAAAAGAACTTGAGAGAATCTTTGAAGTCAGTTTTGATGCGTGA
AAACCCCATCTCTTGGTGTTGATCACTGCTTTGAGCCTTCACTCCAGTCA
AGCTTGTCATGGCATCGTGAACTGCTGCACAATAGCTCATGCTTGAAACC
CAAAGTTGACGAACATTCTCTTCCATTCCCCTACCTCTTGTCAATCCACC
ACGGCTTTTTATTGACCTCATAAGTGTCTGCTCAATGACAAGATCGGACC
AAAGACCAGCCCAGTATCGATTTGATCTCCTCACGGCATGATGACCACTC
GAAAACTTGTTAAACAGGTATGGATATTTCGACGACAGTTCTGACATTTG

Coding sequence (CDS) from alignment at sc0002318:12016..12565

>TCONS_00040129 ID=TCONS_00040129|Name=TCONS_00040129|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at sc0002318:12016..12565 (Clytia hemisphaerica)
GGCAGCGAGAGACTTCACTTCGTCCTTTCGTTTAATTGAAGCGTCGGTGA
ATGATTTCCCATCTAATGAGCTTTGAATCCTCCCTCCAACCACCTCAGCT
TCATCACAGTTGACGTTGTCTTGACCGGTAACTGCAATTACGCCAGAGGA
TAAGGAATGTAAGTGGGCATCCTCGTAAACAAAAGGGTTCCGTTTTTCCA
ACCAACAAAAGAACTTGAGAGAATCTTTGAAGTCAGTTTTGATGCGTGAA
AACCCCATCTCTTGGTGTTGATCACTGCTTTGAGCCTTCACTCCAGTCAA
GCTTGTCATGGCATCGTGAACTGCTGCACAATAGCTCATGCTTGAAACCC
AAAGTTGACGAACATTCTCTTCCATTCCCCTACCTCTTGTCAATCCACCA
CGGCTTTTTATTGACCTCATAAGTGTCTGCTCAATGACAAGATCGGACCA
AAGACCAGCCCAGTATCGATTTGATCTCCTCACGGCATGATGACCACTCG
AAAACTTGTTAAACAGGTATGGATATTTCGACGACAGTTCTGACATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024339XLOC_024339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040129-exon-sc0002318-1491911889:12016..12565TCONS_00040129-exon-sc0002318-1491911889:12016..12565Clytia hemisphaericaexon
TCONS_00040129-exon-sc0002318-1510915933:12016..12565TCONS_00040129-exon-sc0002318-1510915933:12016..12565Clytia hemisphaericaexon
TCONS_00040129-exon-sc0002318-1575043694:12016..12565TCONS_00040129-exon-sc0002318-1575043694:12016..12565Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040129-proteinTCONS_00040129-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002318supercontigsc0002318:12016..12565 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.191435	0.568853	0.738044	0.338635	0.151184	0.676309	1.01492	0.153134	0.379543	0.291365	0.417119	0.158785	0	0	0	0	0	0.255031	0.193639	0.200089	0.102031	0.0210106	0.0382033	2.26857	1.26259	0.010257	0	0	0.314185
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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