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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040128 ID=TCONS_00040128|Name=TCONS_00040128|organism=Clytia hemisphaerica|type=transcript|length=646bp
aagagatTCATAAGCaaataattaaattaaaaaactaaaattgatgGAAT
GAAAGAGGTATGGCAGCTCATTGCATACTTTGTAATAAAGAAGATGAGCA
AGACAATCTTGTACAAGTCAAGCAGAAAGGACTGAAGACACTCAAGAAAC
TagcaaaagaaagaaagctTGAAGACTTGAGCAGtGAATTGAAGAAACAA
CCACTCTACGTGCACCATGATTGTAGGAGGAAATTTATTGACAAGCGAAG
GTCTTCTGGTGGAAACGAACCGTGTCGAAAACGCCTAAGGTCATCAGTAG
ATAGCGAAGATCAATTCAAATGGAAGATTCACTGCTTTTTCTGTGGGAAA
GAAAAGGATCACAAAAACAGTACGAGTGATGTGGAGACTATTCCTATACT
GAACAATATACTCAAACAGTGTGAAGTAAGAGATGACGATTGGGGGAATT
TGGTTCGAAATCGTTTGCTGCCATCAATCGATATTGTCGCTGATGAAGGA
TTTTACCACCGTTCATGTATTgcaaagttttttaaagaaagcaGGAGTGA
CAAAAGTGCTGGACGCCCTGTCAACAATAACATGCAGAAGCATTTCGAGC
ATATATGTGATTGGTTGGAAGGAGAGAGTGAATGCGAACCCCATTT Run BLAST on NCBI protein sequence of TCONS_00040128-protein >TCONS_00040128-protein ID=TCONS_00040128-protein|Name=TCONS_00040128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MAAHCILCNKEDEQDNLVQVKQKGLKTLKKLAKERKLEDLSSELKKQPLY
VHHDCRRKFIDKRRSSGGNEPCRKRLRSSVDSEDQFKWKIHCFFCGKEKD
HKNSTSDVETIPILNNILKQCEVRDDDWGNLVRNRLLPSIDIVADEGFYH
RSCIAKFFKESRSDKSAGRPVNNNMQKHFEHICDWLEGESECEPH Run BLAST on NCBI transcript from alignment at sc0002318:15243..16339- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040128 ID=TCONS_00040128|Name=TCONS_00040128|organism=Clytia hemisphaerica|type=transcript|length=1097bp|location=Sequence derived from alignment at sc0002318:15243..16339- (Clytia hemisphaerica)
AAGAGATTCATAAGCAAATAATTAAATTAAAAAACTAAAATTGATGGAAT
GAAAGAGGTATGGCAGCTCATTGCATACTTTGTAATAAAGAAGATGAGCA
AGACAATCTTGTACAAGTCAAGCAGAAAGGACTGAAGACACTCAAGAAAC
TAGCAAAAGAAAGAAAGCTTGAAGACTTGAGCAGGTTTTTATTAGATTTA
CAGTTTGCTGAGTGAGATTAACTTTAGGTTTAGGGTTTTCAGGCTTACGA
GTGGGAGATTTCTAGGTAGGATTGAAGTGTCTTTAGAATGATATGAAGGT
GTTCAAATAATTATTCAAGGTTGGAGGTGCTAGGCTTGGGAGTTGAAAGA
TATGCTAGAGCCATAAGTTTTTTGATTTCTATTAACAAGTCTCTTTTAAG
AATAGCTCTTAAATCTAATATCTTAAGTGGTGTTTGCTGAAAGCTTCTCA
CCGGCTAGATAAAGTGTTTGATATCTTAGTCAGAATTTTGATTTCAGTCT
TTTTGATTCAACTAGGAGAATAGTTAAGTTTCTTTTGAGGTTTATTTCTT
TTCAAAGTAAAACAGTTCTGAAAGCGTAATTTTTGAGATAACTGGGACAA
ATAAATAAATTAACATTTTCTTTTACATTTTTAAGTGAATTGAAGAAACA
ACCACTCTACGTGCACCATGATTGTAGGAGGAAATTTATTGACAAGCGAA
GGTCTTCTGGTGGAAACGAACCGTGTCGAAAACGCCTAAGGTCATCAGTA
GATAGCGAAGATCAATTCAAATGGAAGATTCACTGCTTTTTCTGTGGGAA
AGAAAAGGATCACAAAAACAGTACGAGTGATGTGGAGACTATTCCTATAC
TGAACAATATACTCAAACAGTGTGAAGTAAGAGATGACGATTGGGGGAAT
TTGGTTCGAAATCGTTTGCTGCCATCAATCGATATTGTCGCTGATGAAGG
ATTTTACCACCGTTCATGTATTGCAAAGTTTTTTAAAGAAAGCAGGAGTG
ACAAAAGTGCTGGACGCCCTGTCAACAATAACATGCAGAAGCATTTCGAG
CATATATGTGATTGGTTGGAAGGAGAGAGTGAATGCGAACCCCATTT Coding sequence (CDS) from alignment at sc0002318:15243..16339- >TCONS_00040128 ID=TCONS_00040128|Name=TCONS_00040128|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at sc0002318:15243..16339- (Clytia hemisphaerica)
TGAATTGAAGAAACAACCACTCTACGTGCACCATGATTGTAGGAGGAAAT
TTATTGACAAGCGAAGGTCTTCTGGTGGAAACGAACCGTGTCGAAAACGC
CTAAGGTCATCAGTAGATAGCGAAGATCAATTCAAATGGAAGATTCACTG
CTTTTTCTGTGGGAAAGAAAAGGATCACAAAAACAGTACGAGTGATGTGG
AGACTATTCCTATACTGAACAATATACTCAAACAGTGTGAAGTAAGAGAT
GACGATTGGGGGAATTTGGTTCGAAATCGTTTGCTGCCATCAATCGATAT
TGTCGCTGATGAAGGATTTTACCACCGTTCATGTATTGCAAAGTTTTTTA
AAGAAAGCAGGAGTGACAAAAGTGCTGGACGCCCTGTCAACAATAACATG
CAGAAGCATTTCGAGCATATATGTGATTGGTTGGAAGGAGAGAGTGAATG
CGAACCCCATATGGCAGCTCATTGCATACTTTGTAATAAAGAAGATGAGC
AAGACAATCTTGTACAAGTCAAGCAGAAAGGACTGAAGACACTCAAGAAA
CTAGCAAAAGAAAGAAAGCTTGAAGACTTGAGCAGTGAATTGAAGAAACA
ACCACTCTACGTGCACCATGATTGTAGGAGGAAATTTATTGACAAGCGAA
GGTCTTCTGGTGGAAACGAACCGTGTCGAAAACGCCTAAGGTCATCAGTA
GATAGCGAAGATCAATTCAAATGGAAGATTCACTGCTTTTTCTGTGGGAA
AGAAAAGGATCACAAAAACAGTACGAGTGATGTGGAGACTATTCCTATAC
TGAACAATATACTCAAACAGTGTGAAGTAAGAGATGACGATTGGGGGAAT
TTGGTTCGAAATCGTTTGCTGCCATCAATCGATATTGTCGCTGATGAAGG
ATTTTACCACCGTTCATGTATTGCAAAGTTTTTTAAAGAAAGCAGGAGTG
ACAAAAGTGCTGGACGCCCTGTCAACAATAACATGCAGAAGCATTTCGAG
CATATATGTGATTGGTTGGAAGGAGAGAGTGAATGCGAACCCCATATGGC
AGCTCATTGCATACTTTGTAATAAAGAAGATGAGCAAGACAATCTTGTAC
AAGTCAAGCAGAAAGGACTGAAGACACTCAAGAAACTAGCAAAAGAAAGA
AAGCTTGAAGACTTGAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040128-exon-sc0002318-1575043694:16156..16339 | TCONS_00040128-exon-sc0002318-1575043694:16156..16339 | Clytia hemisphaerica | exon |
| TCONS_00040128-exon-sc0002318-1575043694:15243..15704 | TCONS_00040128-exon-sc0002318-1575043694:15243..15704 | Clytia hemisphaerica | exon |
| TCONS_00040128-exon-sc0002318-1510915933:16156..16339 | TCONS_00040128-exon-sc0002318-1510915933:16156..16339 | Clytia hemisphaerica | exon |
| TCONS_00040128-exon-sc0002318-1510915933:15243..15704 | TCONS_00040128-exon-sc0002318-1510915933:15243..15704 | Clytia hemisphaerica | exon |
| TCONS_00040128-exon-sc0002318-1491911889:16156..16339 | TCONS_00040128-exon-sc0002318-1491911889:16156..16339 | Clytia hemisphaerica | exon |
| TCONS_00040128-exon-sc0002318-1491911889:15243..15704 | TCONS_00040128-exon-sc0002318-1491911889:15243..15704 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002318 | supercontig | sc0002318:15243..16339 - |
Blast
The following BLAST results are available for this feature:
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