TCONS_00040125 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040125
Unique NameTCONS_00040125
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040125 ID=TCONS_00040125|Name=TCONS_00040125|organism=Clytia hemisphaerica|type=transcript|length=812bp
AAAAAGAGTATAAAATCCCAGATTATTTGCAAATCTTTTTATCCAAAGGA
AAACAACTTGAAAAGTATGACATGCTGTTAGAAATATTTTGCAACAATAG
TTGTGCCCAGGATAAGAAAGATTGAATCTTAATTTTAAATCTGAtataaa
aatcaccaaaaactTTAACTGTACAATTAAATGGGCCTTTATATACCAAA
AGTGAGTTACCAGAAACGATCGAAGTGAAAGAAACTTCAACCCTTACTGA
CGTGCAAAATTCCATACCAGAACTGGCTTCATATTCAATCCGACCTTTAC
ATATAGGAGCCGAGAAAAACTTACCTTCCATCATGTTAAATGATGAATGT
TATCTTTTCCAAATCGTAAGACAATCTGCTTTCGGTCCTCATGTTGAATT
ATTTGTATATCGAAGCATCCGTGTCAAGTTTTTCTCTTGTACACGCTGTG
GAAACTCGTCCATTGTAGAAAAATCTCTCCCCGTTGATACTGACGGTAAA
AAGATAAAAGAATCCCTGAAGGAGTGTAACAATGAATTAAGACACGGATA
CTGTTGTCGTAAAGTTGAGTGGAAACTATCTGCAAACAATCCTCGGCATA
TTAATCCTGGTACAATCTTATCGGATATTGCGAAGGACttagttttgaat
tttcaagccGTTCGATCGATGTCATTatctttgaaaaagatttttcaaag
ttaaGAAGGAATTTTATGAAGTGAATTTGCGTATTTTGTATATATAGTAT
TTCTTTTGAGGTTGATTCTTATCCTTTTGAAAGTGTCAGAATATTATCAG
ATAGCACGAAAA
Run BLAST on NCBI

protein sequence of TCONS_00040125-protein

>TCONS_00040125-protein ID=TCONS_00040125-protein|Name=TCONS_00040125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MLNDECYLFQIVRQSAFGPHVELFVYRSIRVKFFSCTRCGNSSIVEKSLP
VDTDGKKIKESLKECNNELRHGYCCRKVEWKLSANNPRHINPGTILSDIA
KDLVLNFQAVRSMSLSLKKIFQS
Run BLAST on NCBI

transcript from alignment at sc0002317:15846..16657

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040125 ID=TCONS_00040125|Name=TCONS_00040125|organism=Clytia hemisphaerica|type=transcript|length=812bp|location=Sequence derived from alignment at sc0002317:15846..16657 (Clytia hemisphaerica)
TTTTCGTGCTATCTGATAATATTCTGACACTTTCAAAAGGATAAGAATCA
ACCTCAAAAGAAATACTATATATACAAAATACGCAAATTCACTTCATAAA
ATTCCTTCttaactttgaaaaatctttttcaaagatAATGACATCGATCG
AACggcttgaaaattcaaaactaaGTCCTTCGCAATATCCGATAAGATTG
TACCAGGATTAATATGCCGAGGATTGTTTGCAGATAGTTTCCACTCAACT
TTACGACAACAGTATCCGTGTCTTAATTCATTGTTACACTCCTTCAGGGA
TTCTTTTATCTTTTTACCGTCAGTATCAACGGGGAGAGATTTTTCTACAA
TGGACGAGTTTCCACAGCGTGTACAAGAGAAAAACTTGACACGGATGCTT
CGATATACAAATAATTCAACATGAGGACCGAAAGCAGATTGTCTTACGAT
TTGGAAAAGATAACATTCATCATTTAACATGATGGAAGGTAAGTTTTTCT
CGGCTCCTATATGTAAAGGTCGGATTGAATATGAAGCCAGTTCTGGTATG
GAATTTTGCACGTCAGTAAGGGTTGAAGTTTCTTTCACTTCGATCGTTTC
TGGTAACTCACTTTTGGTATATAAAGGCCCATTTAATTGTACAGTTAAag
tttttggtgatttttataTCAGATTTAAAATTAAGATTCAATCTTTCTTA
TCCTGGGCACAACTATTGTTGCAAAATATTTCTAACAGCATGTCATACTT
TTCAAGTTGTTTTCCTTTGGATAAAAAGATTTGCAAATAATCTGGGATTT
TATACTCTTTTT

Coding sequence (CDS) from alignment at sc0002317:15846..16657

>TCONS_00040125 ID=TCONS_00040125|Name=TCONS_00040125|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0002317:15846..16657 (Clytia hemisphaerica)
ttaactttgaaaaatctttttcaaagatAATGACATCGATCGAACggctt
gaaaattcaaaactaaGTCCTTCGCAATATCCGATAAGATTGTACCAGGA
TTAATATGCCGAGGATTGTTTGCAGATAGTTTCCACTCAACTTTACGACA
ACAGTATCCGTGTCTTAATTCATTGTTACACTCCTTCAGGGATTCTTTTA
TCTTTTTACCGTCAGTATCAACGGGGAGAGATTTTTCTACAATGGACGAG
TTTCCACAGCGTGTACAAGAGAAAAACTTGACACGGATGCTTCGATATAC
AAATAATTCAACATGAGGACCGAAAGCAGATTGTCTTACGATTTGGAAAA
GATAACATTCATCATTTAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024335XLOC_024335Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040125-proteinTCONS_00040125-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040125-exon-sc0002317-1491911889:15846..16657TCONS_00040125-exon-sc0002317-1491911889:15846..16657Clytia hemisphaericaexon
TCONS_00040125-exon-sc0002317-1510915933:15846..16657TCONS_00040125-exon-sc0002317-1510915933:15846..16657Clytia hemisphaericaexon
TCONS_00040125-exon-sc0002317-1575043694:15846..16657TCONS_00040125-exon-sc0002317-1575043694:15846..16657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002317supercontigsc0002317:15846..16657 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.237164	0.172121	0.611493	0.272954	0.566368	0.0645913	0.529495	0.50138	0.594953	0.75414	0.422815	0.19592	2.81282	2.08194	0.992369	2.80329	0.17667	0.407432	1.61623	1.67866	0.573814	0.502859	0.474473	0.558982	0.126338	0.16913	1.56021	0.947084	0.722667	0.402904
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040125 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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