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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040123 ID=TCONS_00040123|Name=TCONS_00040123|organism=Clytia hemisphaerica|type=transcript|length=742bp gatatcggcttaacgaaattctccccgaatgattacccatgatgcattgc gaaaaaaaattcagtaagtcaatatagtccgtgaatttttttgcgcaatg catcatggggaatcattcggggagaattcgttaagccgatatcgtctatt tgaTAAAGATTTTGTTGTTTATGTCGGCCTGTTGAGTCAACCAGAATCTG AAGTAATGAATATTCATTATGATGGGAGGGTGAGTTTCTGTCGGCGCTTG CCTTACGTTCAAGTATTGAATACCTATAAAGGAGAAAATGATGGAAGTCA ATATCGTGAAATAACTCAATGGTATCCAAGGACTAATGATTGTACTGTTA TTGGTTTGaaagaatttattgaaaaagaaaccGGAATTCCTGTTGAAAAT CAGATGCTTTACCACGATGCTGAATATATCAGTGATGGAAGATCGatttt gaagattcttttgagAAACGACAAAGATTGTCCGGTAGTAATACATCTTA TGTGCAAGATCAACCAATCACAATCTAATGAATTTATAAGTCCCAAAGCA AAGGAACTTGGTATTCAAGCAATATCTTCGATCACAGTCGAAGATGCAAA ACATCACTTGACACTTTTTGaagatttcatttcaaaattggcCCATAATG AAAATTGGTTGACTAAACTAAGATTGTGCATCAGTTTACCCTCCCATCTT TATCATTTAGAATCTACAAGTGGCTTTATGGTAATTTCAGAA Run BLAST on NCBI protein sequence of TCONS_00040123-protein >TCONS_00040123-protein ID=TCONS_00040123-protein|Name=TCONS_00040123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MHHGESFGENSLSRYRLFDKDFVVYVGLLSQPESEVMNIHYDGRVSFCRR LPYVQVLNTYKGENDGSQYREITQWYPRTNDCTVIGLKEFIEKETGIPVE NQMLYHDAEYISDGRSILKILLRNDKDCPVVIHLMCKINQSQSNEFISPK AKELGIQAISSITVEDAKHHLTLFEDFISKLAHNENWLTKLRLCISLPSH LYHLESTSGFMVISE Run BLAST on NCBI transcript from alignment at sc0002317:16881..24549- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040123 ID=TCONS_00040123|Name=TCONS_00040123|organism=Clytia hemisphaerica|type=transcript|length=7669bp|location=Sequence derived from alignment at sc0002317:16881..24549- (Clytia hemisphaerica) GATATCGGCTTAACGAAATTCTCCCCGAATGATTACCCATGATGCATTGC
GAAAAAAAATTCAGTAAGTCAATATAGTCCGTGAATTTTTTTGCGCAATG
CATCATGGGGAATCATTCGGGGAGAATTCGTTAAGCCGATATCGTCTATT
TGATAAAGATTTTGTTGTTTATGTCGGCCTGTTGAGTCAACCAGAATCTG
AAGTAATGAATATTCATTATGATGGGAGGGTGAGTTTCTGTCGGCGCTTG
CCTTACGTTCAAGTATTGAATACCTATAAAGGAGAAAATGATGGAAGTCA
ATATCGTGAAATAACTCAATGGTATCCAAGGACTAATGATTGTACTGTTA
TTGGTTTGAAAGAATTTATTGAAAAAGAAACCGGAATTCCTGTTGAAAAT
CAGGTGCTTTACCACGATGCTGAATATATTAGTGATGGAAGATCGATTTT
GAAGACTCTTTTGAGAAACGACAAAGATTGTCCGGTAGTAATACATCTTA
TGTGTAAATCCAACCAATCACAATGTAATGAATTTATAACTTCCAAAGCA
AAGGAACTTGGTATACAAGCAATATTTTCGATCACAGTCGAAGATGCAAA
ACATCACTTAACACTTTTTGAAGATTTCATTTCAAAATTGGCCCATAATG
AAGATTGGTTGACTAAACTAAGATTGTGCATCAGTTTACCCTCCCATCTT
TATCATTTAGAATCTACAAGTGGCTTTATGGTAATTTCAGAAAAACAACT
TTATAGTTTGTTTTGTAAGCTGGATGCATTCAAAGAAAATATACGACTTC
GACTAGTGACAATTCAACCTCTTTCAAGAGAAGTCGAAAGCATTGTCGAG
AGTTATTATTTCAAGACTTTTGGGTTGAAAACGATAGTTTTGAAATCGCT
GACAAAGACTAATAGCTTAGATTTTCGTAAATACAAGACTTTATCTTCTA
TTAAAAACTTTGTGGAAAAAGAGTATAAAATCCCGGATTATTTGCAAATC
TTTTTATCCAAAGGAAAACAACTTGAAAAGAATGACAGGCTGTCAGAAAT
ATTTTGCAACAATAGTAGTGCTGAGGATAAGAAAGATGGAATCTTAACTT
TAAATCTGATATCAAAATCACCAAATACTTTTACTGTACTAATAAATGGG
CCTTTATATACTAAAAGTGAGTTACCAGAAACGATTGAAGTAAAAGAAAC
TTCAACCCTTACTGACGTGCAAAATTCCATACCAGAACTTGCTTCATATT
CAATCCGACCTTTACATATAGGAGCCGAGAAAAACACACCTTACATGTCG
AATGATGAATGTTATCTTTTCCAAATCGCAAGACAATCTGCTTTCGGTTC
TCGNCTTTACATATAGGAGCCGAGAAAAACTTACCTTCCATCATGTTAAA
TGATGAATGTTATCTTTTCCAAATCGTAAGACAATCTGCTTTTGGTCCTC
ATGTTGAATTATTTGTATATCGAAGCATCCGTGTCAAGTTTTTCTCTTGT
ACACGCTGTGGAAACTCGTCCATTGTAGAAAAATCTCTCCCCGTTGATAC
TGACGGTAAAAAGATAAAAGAATCCCTGAAGGAGTGTAACAATGAATTAA
GACACGGATACTGTTGCGATAAAGTTGAGTGGAAACTATCTGCAAACAAT
CCTCGGCATATTAATCCTGGTACAATCTTATCGGATATTGCGAAGGACTT
AGTATTGAATTTTCAAGCCGTTCGATCGATGTCATTATCTTTGAAAAAGA
TTTTTCAAAGATAAGAAGGAATTTTATGAAGTGAATTTACGTATTTTGTA
TATATAGTATTTCTTTTGAGGTTGATTCTTATCCTTTTGAAAGTGTCAGA
ATATTATCAGATAGCACGAAAACAACTCGCATTATCACATGTTTGTTTTT
TATAAGAACAAGTTAATTTCAGTTGATCCTGTAATTGGTCTTAAATTTCT
ACTGTTTCAAACAAAAGAGCTTTTGTTCTGAGGACCCATATCTGAGGCTT
GTGTTCTTATCAAATTACTTTTATAAAATTGTTTTTTTTTAATTGTTCTT
AGAAATAAAAAGCGTTTACACTCTTTGGGCATTGTCTGATGTTTGTGAAA
TTGTTGACATGCTGTTAAAAGGCTTTTTCAAGGGGTGGCTGACGGGAGTG
ATTGTATCTCTGAAATACTTAGAAAAGTCTCAAAGTAGCACAGATAATAA
CGACGGACCATCGACTCCAATACGCTCTTAAATTTACTTGTTTTTCTCGT
ACAGCTACAGGCAAATTTAACACAGGTTATCTCATTCCTTCCTTAAAATC
GAGCCTTTGCTTTCGATAACCATTTTTAATGACATAATTTACAAAAATTC
TGATCGGGAGATTAATCAAGGGACTTTTAAAGAGAATCCAGTTAAACTTC
CTACATATCAAAAAGTCATCGTTATTGTTAATGGGGTAGTAGTCATTAGT
CTATTTTTGAAGATTTAATTTAAAATGCAGCTTGATTTGTTTTAATTACA
ACGAAACTAATTAGTGTGTGGAGTAGGAAGCTAAATTTGCTTCTTTTTTT
TTCTCAATCATTACAGGCGAGCCTTAACAGAGCTCACAAGTAGTGTTTTA
AAATTTTTCTCAATTGGGAAGATGGCGTTTCGTGAAAATAATTCTATGGA
AATTATTGATGTGAAGTCAGAACAGACTATAGCGCATATTCCATATGTTG
GTCCGACAACAGTAAAAGAGGTAAAAAGAAAACTCCTAAGAAAAACAAGC
AAAAATATAGAGACAGTCATTTACTTAAGATCTGGTGACGACTTTGAAGT
TCTACTTGACGAAGAGAATCTAATAAGTGAGCGGAGGACAGTGGATTCGA
GCTCAACAAGTACAGTGTATTGTGCATTATTTCGAATCAATTATAACGCA
AATGGGGAAAAGACGAATTTTCAGAGCAATTCATACTCTTGTTCGAGTAA
GAATTATGTTATAAACTTACCCCGAATTCGTGTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTAATCCTGGTACAATCTTATCGGATATTG
CGAAGGACTTAGTTTTGAATTTTCAAGCCGTTCGATCGATGTCATTATCT
TTGAAAAAGATTTTTCAAAGTTAAGAAGGAATTTTATGAAGTGAATTTGC
GTATTTTGTATATATAGTATTTCTTTTGAGGTTGATTCTTATCCTTTTGA
AAGTGTCAGAATATTATCAGATAGCACGAAAACAACTCGCATTATCACAT
GTTTGTTTTTTATAAGAACAAGTTAATTTCAGTTGATCCTGTAATTGGTC
TTAAATTTCTACTGTTTCAAACAAAAGAGCTTTTGTTCTGAGGACCCATA
TCTGAGGCTTGTGTTCTTATCAAATTACTTTTATAAAATTGTTTTTTTTT
AATTGTTCTTAGAAATAAAAAGCGTTTACACTCTTTGGGCATTGTCTGAT
GTTTGTGAAATTGTTGACATGCTGTTAAAAGGCTTTTTCAAGGGGTGGCT
GACGGGAGTGATTGTATCTCTGAAATACTTAGAAAAGTCTCAAAGTAGCA
CAGATAATAACGACGGACCATCGACTCCAATACGCTCTTAAATTTACTTG
TTTTTCTCGTACAGCTACAGGCAAATTTAACACAGGTTATCTCATTCCTT
CCTTAAAATCGAGCCTTTGCTTTCGATAACCATTTTTAATGACATAATTT
ACAAAAATTCTGATCGGGAGATTAATCAAGGGACTTTTAAAGAGAATCCA
GTTAAACTTCCTACATATCAAAAAGTCATCGTTATTGTTAATGGGGTAGT
AGTCATTAGTCTATTTTTGAAGATTTAATTTAAAATGCAGCTTGATTTGT
TTTAATTACAACGAAACTAATTAGTGTGTGGAGTAGGAAGCTAAATTTGC
TTCTTTTTTTTTCTCAATCATTACAGGCGAGCCTTAACAGAGCTCACAAG
TAGTGTTTTAAAATTTTTCTCAATTGGGAAGATGGCGTTTCGTGAAAATA
ATTCTATGGAAATTATTGATGTGAAGTCAGAACAGACTATAGCGCATATT
CCATATGTTGGTCCGACAACAGTAAAAGAAGTAAAACGAGAACTGCTGAA
AAATACAACCAAAAATGTAGAGGCAGTCTTTTACTTAAGATCTGGTGACG
ACTTTGAAGTTCTACTTGACGAAGAGAATCTAATAAGTGAGCGGAGGACA
GTGGATTCGAGTTCAACCAGTACTGTGTATTGTGCATTATTTCGAATCAA
TTATAACANTTGATTCTTATCCTTTTGAAAGTGTCAGAATATTATCAGAT
AGCACGAAAACAACTCGCATTATCACATGTTTGTTTTTTATAAGAACAAG
TTAATTTCAGTTGATCCTGTAATTGGTCTTAAATTTCTACTGTTTCAAAC
AAAAGAGCTTTTGTTCTGAGGACCCATATCTGAGGCTTGTGTTCTTATCA
AATTACTTTTATAAAATTGTTTTTTTGAAATTGTTCTTAGAAATAAAAAA
CGTTTACACTCTTTGGGTGTTGTCTGATGTTTGTGAAATTGTTGACATGT
TGTTAAAATGCTTTTTCAAGGGGTGGCTGACGGGAGTAATTGTATCTCTG
AAATACTTAGAAAAGTCTCAAAGTAGCACAGATAATAACGACGGACCATC
GACTCCAATACGCTCTTAAATTTACTTGTTTTTCTCGTACAGCTACAGGC
AAATTTAACACAGGTTATCTCATTCCTTCCTTAAAATCGAGCCTTTGCTT
TCGATAACCATTTTTAATGACATAATTTACAAAAATTCTGATCGGGAGAT
TAATCAAGGGACTTTTAAAGAGAATCCAGTTAAACTTCCTACATATCAAA
AAGTCATCGTTATTGTTAATGGGGTAGTAGTCATTAGTCTATTTTTGAAG
ATTTAATTTAAAATGCAGCTTGATTTGTTTTAATTACAACGAAACTAATT
AGTGTGTGGAGTAGGAAGCTAAATTTGCTTCTTTTTTTTTCTCAATCATT
ACAGGCGAGCCTTAACAGAGCTCACAAGTAGTGTTTTAAAATTTTTCTCA
ATTGGGAAGATGGCGTTTCGTGAAAATAATTCTATGGAAATTATTGATGT
GAAGTCAGAACAGACTATAGCGCATATTCCATATGTTGGTCCGACAACAG
TAAAAGAGGTAAAAAGAAAACTCCTAAGAAAAACAAGCAAAAATATAGAG
ACAGTCATTTACTTAAGATCTGGTGACGACTTTGAAGTTCTACTTGACGA
AGAGAATCTAATAAGTGAGCGGAGGACAGTGGATTCGAGCTCAACAAGTA
CAGTGTATTGTGCATTATTTCGAATCAATTATAACGCAAATGGGGAAAAG
ACGAATTTTCAGAGCAATTCATACTCTTGTTCGAGTAAGAATTATGTTAT
AAACTTACCCCGGATTCGTGTATGTGTTAACGATGAAAAGCCTATTGTTA
CGTACCAAGGGAACTACTTAAGACCTTGGTTGTGTTCGTTCACCAATTTC
AAGAACGATGGACAATATTTGAGTGGATTTCCATTGGGTAGAGTTTACTT
TTACTGTAAACCTTACACCAATGAAGTTATTATCGAAAATACCAAAACAT
GGCTATACCATATGTCGATTGCAGGACAATTTGATAAAGATTTTGTTGTT
TATATCGGACTGTTGAGTCAACCAGAATCTGAAAGAATAAATATTCATTA
TGATGGGAGGGTGAGTTTCTGTCGGCGCTTGCCTTACGTTCGAGTATTGA
ATACTTATAAAGGAGAAAATGATGGAAGTCAATATCGTGAAATAGCTCGA
TGGTATCCAAAGACTAATGATTGTACTGTTGTTGGTTTGAAAGAATTTAT
TAAAAAAGAAACCGGAATGTTGAAAATCAGATGCTTTACCACGATGCTGA
ATATATCAGTGATGGAAGATCGATTTTGAAGATTCTTTTGAGAAACGACA
AAGATTGTCCGGTAGTAATACATCTTATGTGCAAGATCAACCAATCACAA
TCTAATGAATTTATAAGTCCCAAAGCAAAGGAACTTGGTATTCAAGCAAT
ATCTTCGATCACAGTCGAAGATGCAAAACATCACTTGACACTTTTTGAAG
ATTTCATTTCAAAATTGGCCCATAATGAAAATTGGTTGACTAAACTAAGA
TTGTGCATCAGTTTACCCTCCCATCTTTATCATTTAGAATCTACAAGTGG
CTTTATGGTAATTTCAGAA Coding sequence (CDS) from alignment at sc0002317:16881..24549- >TCONS_00040123 ID=TCONS_00040123|Name=TCONS_00040123|organism=Clytia hemisphaerica|type=CDS|length=1290bp|location=Sequence derived from alignment at sc0002317:16881..24549- (Clytia hemisphaerica) ATGCTTTACCACGATGCTGAATATATCAGTGATGGAAGATCGATTTTGAA GATTCTTTTGAGAAACGACAAAGATTGTCCGGTAGTAATACATCTTATGT GCAAGATCAACCAATCACAATCTAATGAATTTATAAGTCCCAAAGCAAAG GAACTTGGTATTCAAGCAATATCTTCGATCACAGTCGAAGATGCAAAACA TCACTTGACACTTTTTGAAGATTTCATTTCAAAATTGGCCCATAATGAAA ATTGGTTGACTAAACTAAGATTGTGCATCAGTTTACCCTCCCATCTTTAT CATTTAGAATCTACAAGTGGCTTTATGGTAATTTCAGAAATGCATCATGG GGAATCATTCGGGGAGAATTCGTTAAGCCGATATCGTCTATTTGATAAAG ATTTTGTTGTTTATGTCGGCCTGTTGAGTCAACCAGAATCTGAAGTAATG AATATTCATTATGATGGGAGGGTGAGTTTCTGTCGGCGCTTGCCTTACGT TCAAGTATTGAATACCTATAAAGGAGAAAATGATGGAAGTCAATATCGTG AAATAACTCAATGGTATCCAAGGACTAATGATTGTACTGTTATTGGTTTG AAAGAATTTATTGAAAAAGAAACCGGAATTCCTGTTGAAAATCAGATGCT TTACCACGATGCTGAATATATCAGTGATGGAAGATCGATTTTGAAGATTC TTTTGAGAAACGACAAAGATTGTCCGGTAGTAATACATCTTATGTGCAAG ATCAACCAATCACAATCTAATGAATTTATAAGTCCCAAAGCAAAGGAACT TGGTATTCAAGCAATATCTTCGATCACAGTCGAAGATGCAAAACATCACT TGACACTTTTTGAAGATTTCATTTCAAAATTGGCCCATAATGAAAATTGG TTGACTAAACTAAGATTGTGCATCAGTTTACCCTCCCATCTTTATCATTT AGAATCTACAAGTGGCTTTATGGTAATTTCAGAAATGCATCATGGGGAAT CATTCGGGGAGAATTCGTTAAGCCGATATCGTCTATTTGATAAAGATTTT GTTGTTTATGTCGGCCTGTTGAGTCAACCAGAATCTGAAGTAATGAATAT TCATTATGATGGGAGGGTGAGTTTCTGTCGGCGCTTGCCTTACGTTCAAG TATTGAATACCTATAAAGGAGAAAATGATGGAAGTCAATATCGTGAAATA ACTCAATGGTATCCAAGGACTAATGATTGTACTGTTATTGGTTTGAAAGA ATTTATTGAAAAAGAAACCGGAATTCCTGTTGAAAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00040123-exon-sc0002317-1575043694:24147..24549 | TCONS_00040123-exon-sc0002317-1575043694:24147..24549 | Clytia hemisphaerica | exon |
| TCONS_00040123-exon-sc0002317-1575043694:16881..17219 | TCONS_00040123-exon-sc0002317-1575043694:16881..17219 | Clytia hemisphaerica | exon |
| TCONS_00040123-exon-sc0002317-1510915933:24147..24549 | TCONS_00040123-exon-sc0002317-1510915933:24147..24549 | Clytia hemisphaerica | exon |
| TCONS_00040123-exon-sc0002317-1510915933:16881..17219 | TCONS_00040123-exon-sc0002317-1510915933:16881..17219 | Clytia hemisphaerica | exon |
| TCONS_00040123-exon-sc0002317-1491911889:24147..24549 | TCONS_00040123-exon-sc0002317-1491911889:24147..24549 | Clytia hemisphaerica | exon |
| TCONS_00040123-exon-sc0002317-1491911889:16881..17219 | TCONS_00040123-exon-sc0002317-1491911889:16881..17219 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0002317 | supercontig | sc0002317:16881..24549 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|