TCONS_00040120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040120
Unique NameTCONS_00040120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040120 ID=TCONS_00040120|Name=TCONS_00040120|organism=Clytia hemisphaerica|type=transcript|length=367bp
GATTGGTTGATCTTGCACATAAGATGTATTACTACCGGACAATCTTTGTC
GTTTctcaaaagaatcttcaaaatCGATCTTCCATCACTGATATATTCAG
CATCGTGGTAAAGCATCTGATTTTCAACAGGAATTCCggtttctttttca
ataaattctttCAAACCAATAACAGTACAATCATTAGTCCTTGGATACCA
TTGAGTTATTTCACGATATTGACTTCCATCATTTTCTCCTTTATAGGTAT
TCAATACTTGAACGTAAGGCAAGCGCCGACAGAAACTCACCCTCCCATCA
TAATGAATATTCATTACTTCAGATTCTGGTTGACTCAACAGGCCGACATA
AACAACAAAATCTTTAt
Run BLAST on NCBI

transcript from alignment at sc0002317:17104..24397+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040120 ID=TCONS_00040120|Name=TCONS_00040120|organism=Clytia hemisphaerica|type=transcript|length=7294bp|location=Sequence derived from alignment at sc0002317:17104..24397+ (Clytia hemisphaerica)
GATTGGTTGATCTTGCACATAAGATGTATTACTACCGGACAATCTTTGTC
GTTTctcaaaagaatcttcaaaatCGATCTTCCATCACTGATATATTCAG
CATCGTGGTAAAGCATCTGATTTTCAACATTCCggtttcttttttaataa
attctTTCAAACCAACAACAGTACAATCATTAGTCTTTGGATACCATCGA
GCTATTTCACGATATTGACTTCCATCATTTTCTCCTTTATAAGTATTCAA
TACTCGAACGTAAGGCAAGCGCCGACAGAAACTCACCCTCCCATCATAAT
GAATATTTATTCTTTCAGATTCTGGTTGACTCAACAGTCCGATATAAACA
AcaaaatctttatcaaattGTCCTGCAATCGACATATGGTATAGCCATGT
TTTGGTATTTTCGATAATAACTTCATTGGTGTAAGGTTTACAGTAAAAGT
AAACTCTACCCAATGGAAATCCACTCAAATATTGTCCATCGTTCTTGAAA
TTGGTGAACGAACACAACCAAGGTCTTAAGTAGTTCCCTTGGTACGTAAC
AATAGGCTTTTCATCGTTAACACATACACGAATCCGGGGTAAGTTTATAA
CATAATTCTTACTCGAACAAGAGTATGAATTGCTCTGAAAATTCGTCTTT
TCCCCATTTGCGTTATAATTGATTCGAAATAATGCACAATACACTGTACT
TGTTGAGCTCGAATCCACTGTCCTCCGCTCACTTATTAGATTCTCTTCGT
CAAGTAGAACTTCAAAGTCGTCACCAGATCTTAAGTAAATGACTGTCTCT
atatttttgcttgtttttcttagGAGTTTTCTTTTTACCTCTTTTACTGT
TGTCGGACCAACATATGGAATATGCGCTATAGTCTGTTCTGACTTCACAT
CAATAATTTCCATAGAATTATTTTCACGAAACGCCATCTTCCcaattgag
aaaaattttaaaacactaCTTGTGAGCTCTGTTAAGGCTCGCCTGTaatg
attgagaaaaaaaaagaagcaaatttagcTTCCTACTCCACACACTAATT
AGTTTCGTTGTAATTAAAACAAATCAAGCTGCATTTTAaattaaatcttc
aaaaatagACTAATGACTACTACCCCATTAACAATAACGATGACTTTTTG
ATATGTAGGAAGTTTAACTGGATTCTCTTTAAAAGTCCCTTGATTAATCT
CCCGAtcagaatttttgtaaattatgtCATTAAAAATGGTTATCGAAAGC
AAAGGCTCGATTTTAAGGAAGGAATGAGATAACCTGTGTTAAATTTGCCT
GTAGCTGTACGAGAAAAACAAGTAAATTTAAGAGCGTATTGGAGTCGATG
GTCCGTCGTTATTATCTGTGCTACTTTGAGACTTTTCTAAGTATTTCAGA
GATACAATTACTCCCGTCAGCCACCCCTTGAAAAAGCATTTTAACAACAT
GTCAACAATTTCACAAACATCAGACAACACCCAAAGAGTGTAAACGTTTT
TTATTTctaagaacaatttcaaaaaaacaattttataaaagtaATTTGAT
AAGAACACAAGCCTCAGATATGGGTCCTCAGAACAAAAGCTCTTTTGTTT
GAAACAGTAGAAATTTAAGACCAATTACAGGATCAACTGaaattaacttg
ttcttataaaaaacaaacatgtgATAATGCGAGTTGTTTTCGTGCTATCT
GATAATATTCTGACACTTTCAAAAGGATAAGAATCAANTGTTATAATTGA
TTCGAAATAATGCACAATACACAGTACTGGTTGAACTCGAATCCACTGTC
CTCCGCTCACTTATTAGATTCTCTTCGTCAAGTAGAACTTCAAAGTCGTC
ACCAGATCTTAAGTAAAAGACTGCCTCTACATTTTTGGTTGTATTTTTCA
GCAGTTCTCGTTTTACTTCTTTTACTGTTGTCGGACCAACATATGGAATA
TGCGCTATAGTCTGTTCTGACTTCACATCAATAATTTCCATAGAATTATT
TTCACGAAACGCCATCTTCCcaattgagaaaaattttaaaacactaCTTG
TGAGCTCTGTTAAGGCTCGCCTGTaatgattgagaaaaaaaaagaagcaa
atttagcTTCCTACTCCACACACTAATTAGTTTCGTTGTAATTAAAACAA
ATCAAGCTGCATTTTAaattaaatcttcaaaaatagACTAATGACTACTA
CCCCATTAACAATAACGATGACTTTTTGATATGTAGGAAGTTTAACTGGA
TTCTCTTTAAAAGTCCCTTGATTAATCTCCCGAtcagaatttttgtaaat
tatgtCATTAAAAATGGTTATCGAAAGCAAAGGCTCGATTTTAAGGAAGG
AATGAGATAACCTGTGTTAAATTTGCCTGTAGCTGTACGAGAAAAACAAG
TAAATTTAAGAGCGTATTGGAGTCGATGGTCCGTCGTTATTATCTGTGCT
ACTTTGAGACTTTTCTAAGTATTTCAGAGATACAATCACTCCCGTCAGCC
ACCCCTTGAAAAAGCCTTTTAACAGCATGTCAACAATTTCACAAACATCA
GACAATGCCCAAAGAGTGTAAACGCTTTTTATTTCtaagaacaattaaaa
aaaaacaattttataaaagtaATTTGATAAGAACACAAGCCTCAGATATG
GGTCCTCAGAACAAAAGCTCTTTTGTTTGAAACAGTAGAAATTTAAGACC
AATTACAGGATCAACTGaaattaacttgttcttataaaaaacaaacatgt
gATAATGCGAGTTGTTTTCGTGCTATCTGATAATATTCTGACACTTTCAA
AAGGATAAGAATCAACCTCAAAAGAAATACTATATATACAAAATACGCAA
ATTCACTTCATAAAATTCCTTCttaactttgaaaaatctttttcaaagat
AATGACATCGATCGAACggcttgaaaattcaaaactaaGTCCTTCGCAAT
ATCCGATAAGATTGTACCAGGATTAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNACACGAATTCGGGGTAAGTTTATAACATAATTCTTAC
TCGAACAAGAGTATGAATTGCTCTGAAAATTCGTCTTTTCCCCATTTGCG
TTATAATTGATTCGAAATAATGCACAATACACTGTACTTGTTGAGCTCGA
ATCCACTGTCCTCCGCTCACTTATTAGATTCTCTTCGTCAAGTAGAACTT
CAAAGTCGTCACCAGATCTTAAGTAAATGACTGTCTCTatatttttgctt
gtttttcttagGAGTTTTCTTTTTACCTCTTTTACTGTTGTCGGACCAAC
ATATGGAATATGCGCTATAGTCTGTTCTGACTTCACATCAATAATTTCCA
TAGAATTATTTTCACGAAACGCCATCTTCCcaattgagaaaaattttaaa
acactaCTTGTGAGCTCTGTTAAGGCTCGCCTGTaatgattgagaaaaaa
aaagaagcaaatttagcTTCCTACTCCACACACTAATTAGTTTCGTTGTA
ATTAAAACAAATCAAGCTGCATTTTAaattaaatcttcaaaaatagACTA
ATGACTACTACCCCATTAACAATAACGATGACTTTTTGATATGTAGGAAG
TTTAACTGGATTCTCTTTAAAAGTCCCTTGATTAATCTCCCGAtcagaat
ttttgtaaattatgtCATTAAAAATGGTTATCGAAAGCAAAGGCTCGATT
TTAAGGAAGGAATGAGATAACCTGTGTTAAATTTGCCTGTAGCTGTACGA
GAAAAACAAGTAAATTTAAGAGCGTATTGGAGTCGATGGTCCGTCGTTAT
TATCTGTGCTACTTTGAGACTTTTCTAAGTATTTCAGAGATACAATCACT
CCCGTCAGCCACCCCTTGAAAAAGCCTTTTAACAGCATGTCAACAATTTC
ACAAACATCAGACAATGCCCAAAGAGTGTAAACGCTTTTTATTTCtaaga
acaattaaaaaaaaacaattttataaaagtaATTTGATAAGAACACAAGC
CTCAGATATGGGTCCTCAGAACAAAAGCTCTTTTGTTTGAAACAGTAGAA
ATTTAAGACCAATTACAGGATCAACTGaaattaacttgttcttataaaaa
acaaacatgtgATAATGCGAGTTGTTTTCGTGCTATCTGATAATATTCTG
ACACTTTCAAAAGGATAAGAATCAACCTCAAAAGAAATACTATATATACA
AAATACGTAAATTCACTTCATAAAATTCCTTcttatctttgaaaaatctt
tttcaaagatAATGACATCGATCGAACGGCTTGAAAATTCAATACTAAGT
CCTTCGCAATATCCGATAAGATTGTACCAGGATTAATATGCCGAGGATTG
TTTGCAGATAGTTTCCACTCAACTTTATCGCAACAGTATCCGTGTCTTAA
TTCATTGTTACACTCCTTCAGGGATTCTTTTATCTTTTTACCGTCAGTAT
CAACGGGGAGAGATTTTTCTACAATGGACGAGTTTCCACAGCGTGTACAA
GAGAAAAACTTGACACGGATGCTTCGATATACAAATAATTCAACATGAGG
ACCAAAAGCAGATTGTCTTACGATTTGGAAAAGATAACATTCATCATTTA
ACATGATGGAAGGTAAGTTTTTCTCGGCTCCTATATGTAAAGNCGAGAAC
CGAAAGCAGATTGTCTTGCGATTTGGAAAAGATAACATTCATCATTCGAC
ATGTAAGGTGTGTTTTTCTCGGCTCCTATATGTAAAGGTCGGATTGAATA
TGAAGCAAGTTCTGGTATGGAATTTTGCACGTCAGTAAGGGTTGAAGTTT
CTTTTACTTCAATCGTTTCTGGTAACTCACTTTTAGTATATAAAGGCCCA
TTTATTAGTACAGTAAAAGTATTTGGTGATTTTGATATCAGATTTAAAGT
TAAGATTCCATCTTTCTTATCCTCAGCACTACTATTGTTGCAAAATATTT
CTGACAGCCTGTCATTCTTTTCAAGTTGTTTTCCTTTGGATAAAAAGATT
TGCAAATAATCCGGGATTTTATACTCTTTTTCCACAAAGTTTTTAATAGA
AGATAAAGTCTTGTATTTACGAAAATCTAAGCTATTAGTCTTTGTCAGCG
ATTTCAAAACTATCGTTTTCAACCCAAAAGTCTTGAAATAATAACTCTCG
ACAATGCTTTCGACTTCTCTTGAAAGAGGTTGAATTGTCACTAGTCGAAG
TCGtatattttctttgaatgcATCCAGCTTACAAAACAAACTATAAAGTT
GTTTTTCTGAAATTACCATAAAGCCACTTGTAGATTCTAAATGATAAAGA
TGGGAGGGTAAACTGATGCACAATCTTAGTTTAGTCAACCAATCTTCATT
ATGGgccaattttgaaatgaaatcttCAAAAAGTGTTAAGTGATGTTTTG
CATCTTCGACTGTGATCGAAAATATTGCTTGTATACCAAGTTCCTTTGCT
TTGGAAGTTATAAATTCATTACATTGTGATTGGTTGGATTTACACATAAG
ATGTATTACTACCGGACAATCTTTGTCGTTTCTCAAAAGAGTCTTCAAAA
TCGATCTTCCATCACTAATATATTCAGCATCGTGGTAAAGCACCTGATTT
TCAACAGGAATTCCggtttctttttcaataaattctttCAAACCAATAAC
AGTACAATCATTAGTCCTTGGATACCATTGAGTTATTTCACGATATTGAC
TTCCATCATTTTCTCCTTTATAGGTATTCAATACTTGAACGTAAGGCAAG
CGCCGACAGAAACTCACCCTCCCATCATAATGAATATTCATTACTTCAGA
TTCTGGTTGACTCAACAGGCCGACATAAACAACAAAATCTTTAt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024330XLOC_024330Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040120-exon-sc0002317-1491911889:17104..17231TCONS_00040120-exon-sc0002317-1491911889:17104..17231Clytia hemisphaericaexon
TCONS_00040120-exon-sc0002317-1510915933:17104..17231TCONS_00040120-exon-sc0002317-1510915933:17104..17231Clytia hemisphaericaexon
TCONS_00040120-exon-sc0002317-1575043694:17104..17231TCONS_00040120-exon-sc0002317-1575043694:17104..17231Clytia hemisphaericaexon
TCONS_00040120-exon-sc0002317-1491911889:24159..24397TCONS_00040120-exon-sc0002317-1491911889:24159..24397Clytia hemisphaericaexon
TCONS_00040120-exon-sc0002317-1510915933:24159..24397TCONS_00040120-exon-sc0002317-1510915933:24159..24397Clytia hemisphaericaexon
TCONS_00040120-exon-sc0002317-1575043694:24159..24397TCONS_00040120-exon-sc0002317-1575043694:24159..24397Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002317supercontigsc0002317:17104..24397 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.575679	0.410299	0	0	1.94067	0	0	1.44059	1.59993	1.15875	0.708199	0.766266	0.804897	0	1.14707	0	0	0.00579677	0	0	0	0	0	0	0	0	0.80633
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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