TCONS_00040119 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00040119
Unique Name	TCONS_00040119
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	590

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002317:16881..24397+

transcript sequence

>TCONS_00040119 ID=TCONS_00040119|Name=TCONS_00040119|organism=Clytia hemisphaerica|type=transcript|length=590bp
TTCTGAAATTACCATAAAGCCACTTGTAGATTCTAAATGATAAAGATGGG
AGGGTAAACTGATGCACAATCTTAGTTTAGTCAACCAATTTTCATTATGG
gccaattttgaaatgaaatcttCAAAAAGTGTCAAGTGATGTTTTGCATC
TTCGACTGTGATCGAAGATATTGCTTGAATACCAAGTTCCTTTGCTTTGG
GACTTATAAATTCATTAGATTGTGATTGGTTGGATTTACACATAAGATGT
ATTACTACCGGACAATCTTTGTCGTTTCTCAAAAGAGTCTTCAAAATCGA
TCTTCCATCACTAATATATTCAGCATCGTGGTAAAGCACCTGATTTTCAA
CAGGAATTCCggtttctttttcaataaattctttCAAACCAATAACAGTA
CAATCATTAGTCCTTGGATACCATTGAGTTATTTCACGATATTGACTTCC
ATCATTTTCTCCTTTATAGGTATTCAATACTTGAACGTAAGGCAAGCGCC
GACAGAAACTCACCCTCCCATCATAATGAATATTCATTACTTCAGATTCT
GGTTGACTCAACAGGCCGACATAAACAACAAAATCTTTAt

Run BLAST on NCBI

transcript from alignment at sc0002317:16881..24397+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00040119 ID=TCONS_00040119|Name=TCONS_00040119|organism=Clytia hemisphaerica|type=transcript|length=7517bp|location=Sequence derived from alignment at sc0002317:16881..24397+ (Clytia hemisphaerica)
TTCTGAAATTACCATAAAGCCACTTGTAGATTCTAAATGATAAAGATGGG
AGGGTAAACTGATGCACAATCTTAGTTTAGTCAACCAATTTTCATTATGG
gccaattttgaaatgaaatcttCAAAAAGTGTCAAGTGATGTTTTGCATC
TTCGACTGTGATCGAAGATATTGCTTGAATACCAAGTTCCTTTGCTTTGG
GACTTATAAATTCATTAGATTGTGATTGGTTGATCTTGCACATAAGATGT
ATTACTACCGGACAATCTTTGTCGTTTctcaaaagaatcttcaaaatCGA
TCTTCCATCACTGATATATTCAGCATCGTGGTAAAGCATCTGATTTTCAA
CATTCCggtttcttttttaataaattctTTCAAACCAACAACAGTACAAT
CATTAGTCTTTGGATACCATCGAGCTATTTCACGATATTGACTTCCATCA
TTTTCTCCTTTATAAGTATTCAATACTCGAACGTAAGGCAAGCGCCGACA
GAAACTCACCCTCCCATCATAATGAATATTTATTCTTTCAGATTCTGGTT
GACTCAACAGTCCGATATAAACAAcaaaatctttatcaaattGTCCTGCA
ATCGACATATGGTATAGCCATGTTTTGGTATTTTCGATAATAACTTCATT
GGTGTAAGGTTTACAGTAAAAGTAAACTCTACCCAATGGAAATCCACTCA
AATATTGTCCATCGTTCTTGAAATTGGTGAACGAACACAACCAAGGTCTT
AAGTAGTTCCCTTGGTACGTAACAATAGGCTTTTCATCGTTAACACATAC
ACGAATCCGGGGTAAGTTTATAACATAATTCTTACTCGAACAAGAGTATG
AATTGCTCTGAAAATTCGTCTTTTCCCCATTTGCGTTATAATTGATTCGA
AATAATGCACAATACACTGTACTTGTTGAGCTCGAATCCACTGTCCTCCG
CTCACTTATTAGATTCTCTTCGTCAAGTAGAACTTCAAAGTCGTCACCAG
ATCTTAAGTAAATGACTGTCTCTatatttttgcttgtttttcttagGAGT
TTTCTTTTTACCTCTTTTACTGTTGTCGGACCAACATATGGAATATGCGC
TATAGTCTGTTCTGACTTCACATCAATAATTTCCATAGAATTATTTTCAC
GAAACGCCATCTTCCcaattgagaaaaattttaaaacactaCTTGTGAGC
TCTGTTAAGGCTCGCCTGTaatgattgagaaaaaaaaagaagcaaattta
gcTTCCTACTCCACACACTAATTAGTTTCGTTGTAATTAAAACAAATCAA
GCTGCATTTTAaattaaatcttcaaaaatagACTAATGACTACTACCCCA
TTAACAATAACGATGACTTTTTGATATGTAGGAAGTTTAACTGGATTCTC
TTTAAAAGTCCCTTGATTAATCTCCCGAtcagaatttttgtaaattatgt
CATTAAAAATGGTTATCGAAAGCAAAGGCTCGATTTTAAGGAAGGAATGA
GATAACCTGTGTTAAATTTGCCTGTAGCTGTACGAGAAAAACAAGTAAAT
TTAAGAGCGTATTGGAGTCGATGGTCCGTCGTTATTATCTGTGCTACTTT
GAGACTTTTCTAAGTATTTCAGAGATACAATTACTCCCGTCAGCCACCCC
TTGAAAAAGCATTTTAACAACATGTCAACAATTTCACAAACATCAGACAA
CACCCAAAGAGTGTAAACGTTTTTTATTTctaagaacaatttcaaaaaaa
caattttataaaagtaATTTGATAAGAACACAAGCCTCAGATATGGGTCC
TCAGAACAAAAGCTCTTTTGTTTGAAACAGTAGAAATTTAAGACCAATTA
CAGGATCAACTGaaattaacttgttcttataaaaaacaaacatgtgATAA
TGCGAGTTGTTTTCGTGCTATCTGATAATATTCTGACACTTTCAAAAGGA
TAAGAATCAANTGTTATAATTGATTCGAAATAATGCACAATACACAGTAC
TGGTTGAACTCGAATCCACTGTCCTCCGCTCACTTATTAGATTCTCTTCG
TCAAGTAGAACTTCAAAGTCGTCACCAGATCTTAAGTAAAAGACTGCCTC
TACATTTTTGGTTGTATTTTTCAGCAGTTCTCGTTTTACTTCTTTTACTG
TTGTCGGACCAACATATGGAATATGCGCTATAGTCTGTTCTGACTTCACA
TCAATAATTTCCATAGAATTATTTTCACGAAACGCCATCTTCCcaattga
gaaaaattttaaaacactaCTTGTGAGCTCTGTTAAGGCTCGCCTGTaat
gattgagaaaaaaaaagaagcaaatttagcTTCCTACTCCACACACTAAT
TAGTTTCGTTGTAATTAAAACAAATCAAGCTGCATTTTAaattaaatctt
caaaaatagACTAATGACTACTACCCCATTAACAATAACGATGACTTTTT
GATATGTAGGAAGTTTAACTGGATTCTCTTTAAAAGTCCCTTGATTAATC
TCCCGAtcagaatttttgtaaattatgtCATTAAAAATGGTTATCGAAAG
CAAAGGCTCGATTTTAAGGAAGGAATGAGATAACCTGTGTTAAATTTGCC
TGTAGCTGTACGAGAAAAACAAGTAAATTTAAGAGCGTATTGGAGTCGAT
GGTCCGTCGTTATTATCTGTGCTACTTTGAGACTTTTCTAAGTATTTCAG
AGATACAATCACTCCCGTCAGCCACCCCTTGAAAAAGCCTTTTAACAGCA
TGTCAACAATTTCACAAACATCAGACAATGCCCAAAGAGTGTAAACGCTT
TTTATTTCtaagaacaattaaaaaaaaacaattttataaaagtaATTTGA
TAAGAACACAAGCCTCAGATATGGGTCCTCAGAACAAAAGCTCTTTTGTT
TGAAACAGTAGAAATTTAAGACCAATTACAGGATCAACTGaaattaactt
gttcttataaaaaacaaacatgtgATAATGCGAGTTGTTTTCGTGCTATC
TGATAATATTCTGACACTTTCAAAAGGATAAGAATCAACCTCAAAAGAAA
TACTATATATACAAAATACGCAAATTCACTTCATAAAATTCCTTCttaac
tttgaaaaatctttttcaaagatAATGACATCGATCGAACggcttgaaaa
ttcaaaactaaGTCCTTCGCAATATCCGATAAGATTGTACCAGGATTAAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACGAATTCGGGG
TAAGTTTATAACATAATTCTTACTCGAACAAGAGTATGAATTGCTCTGAA
AATTCGTCTTTTCCCCATTTGCGTTATAATTGATTCGAAATAATGCACAA
TACACTGTACTTGTTGAGCTCGAATCCACTGTCCTCCGCTCACTTATTAG
ATTCTCTTCGTCAAGTAGAACTTCAAAGTCGTCACCAGATCTTAAGTAAA
TGACTGTCTCTatatttttgcttgtttttcttagGAGTTTTCTTTTTACC
TCTTTTACTGTTGTCGGACCAACATATGGAATATGCGCTATAGTCTGTTC
TGACTTCACATCAATAATTTCCATAGAATTATTTTCACGAAACGCCATCT
TCCcaattgagaaaaattttaaaacactaCTTGTGAGCTCTGTTAAGGCT
CGCCTGTaatgattgagaaaaaaaaagaagcaaatttagcTTCCTACTCC
ACACACTAATTAGTTTCGTTGTAATTAAAACAAATCAAGCTGCATTTTAa
attaaatcttcaaaaatagACTAATGACTACTACCCCATTAACAATAACG
ATGACTTTTTGATATGTAGGAAGTTTAACTGGATTCTCTTTAAAAGTCCC
TTGATTAATCTCCCGAtcagaatttttgtaaattatgtCATTAAAAATGG
TTATCGAAAGCAAAGGCTCGATTTTAAGGAAGGAATGAGATAACCTGTGT
TAAATTTGCCTGTAGCTGTACGAGAAAAACAAGTAAATTTAAGAGCGTAT
TGGAGTCGATGGTCCGTCGTTATTATCTGTGCTACTTTGAGACTTTTCTA
AGTATTTCAGAGATACAATCACTCCCGTCAGCCACCCCTTGAAAAAGCCT
TTTAACAGCATGTCAACAATTTCACAAACATCAGACAATGCCCAAAGAGT
GTAAACGCTTTTTATTTCtaagaacaattaaaaaaaaacaattttataaa
agtaATTTGATAAGAACACAAGCCTCAGATATGGGTCCTCAGAACAAAAG
CTCTTTTGTTTGAAACAGTAGAAATTTAAGACCAATTACAGGATCAACTG
aaattaacttgttcttataaaaaacaaacatgtgATAATGCGAGTTGTTT
TCGTGCTATCTGATAATATTCTGACACTTTCAAAAGGATAAGAATCAACC
TCAAAAGAAATACTATATATACAAAATACGTAAATTCACTTCATAAAATT
CCTTcttatctttgaaaaatctttttcaaagatAATGACATCGATCGAAC
GGCTTGAAAATTCAATACTAAGTCCTTCGCAATATCCGATAAGATTGTAC
CAGGATTAATATGCCGAGGATTGTTTGCAGATAGTTTCCACTCAACTTTA
TCGCAACAGTATCCGTGTCTTAATTCATTGTTACACTCCTTCAGGGATTC
TTTTATCTTTTTACCGTCAGTATCAACGGGGAGAGATTTTTCTACAATGG
ACGAGTTTCCACAGCGTGTACAAGAGAAAAACTTGACACGGATGCTTCGA
TATACAAATAATTCAACATGAGGACCAAAAGCAGATTGTCTTACGATTTG
GAAAAGATAACATTCATCATTTAACATGATGGAAGGTAAGTTTTTCTCGG
CTCCTATATGTAAAGNCGAGAACCGAAAGCAGATTGTCTTGCGATTTGGA
AAAGATAACATTCATCATTCGACATGTAAGGTGTGTTTTTCTCGGCTCCT
ATATGTAAAGGTCGGATTGAATATGAAGCAAGTTCTGGTATGGAATTTTG
CACGTCAGTAAGGGTTGAAGTTTCTTTTACTTCAATCGTTTCTGGTAACT
CACTTTTAGTATATAAAGGCCCATTTATTAGTACAGTAAAAGTATTTGGT
GATTTTGATATCAGATTTAAAGTTAAGATTCCATCTTTCTTATCCTCAGC
ACTACTATTGTTGCAAAATATTTCTGACAGCCTGTCATTCTTTTCAAGTT
GTTTTCCTTTGGATAAAAAGATTTGCAAATAATCCGGGATTTTATACTCT
TTTTCCACAAAGTTTTTAATAGAAGATAAAGTCTTGTATTTACGAAAATC
TAAGCTATTAGTCTTTGTCAGCGATTTCAAAACTATCGTTTTCAACCCAA
AAGTCTTGAAATAATAACTCTCGACAATGCTTTCGACTTCTCTTGAAAGA
GGTTGAATTGTCACTAGTCGAAGTCGtatattttctttgaatgcATCCAG
CTTACAAAACAAACTATAAAGTTGTTTTTCTGAAATTACCATAAAGCCAC
TTGTAGATTCTAAATGATAAAGATGGGAGGGTAAACTGATGCACAATCTT
AGTTTAGTCAACCAATCTTCATTATGGgccaattttgaaatgaaatcttC
AAAAAGTGTTAAGTGATGTTTTGCATCTTCGACTGTGATCGAAAATATTG
CTTGTATACCAAGTTCCTTTGCTTTGGAAGTTATAAATTCATTACATTGT
GATTGGTTGGATTTACACATAAGATGTATTACTACCGGACAATCTTTGTC
GTTTCTCAAAAGAGTCTTCAAAATCGATCTTCCATCACTAATATATTCAG
CATCGTGGTAAAGCACCTGATTTTCAACAGGAATTCCggtttctttttca
ataaattctttCAAACCAATAACAGTACAATCATTAGTCCTTGGATACCA
TTGAGTTATTTCACGATATTGACTTCCATCATTTTCTCCTTTATAGGTAT
TCAATACTTGAACGTAAGGCAAGCGCCGACAGAAACTCACCCTCCCATCA
TAATGAATATTCATTACTTCAGATTCTGGTTGACTCAACAGGCCGACATA
AACAACAAAATCTTTAt

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_024330	XLOC_024330	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00040119-exon-sc0002317-1491911889:16881..17098	TCONS_00040119-exon-sc0002317-1491911889:16881..17098	Clytia hemisphaerica	exon
TCONS_00040119-exon-sc0002317-1510915933:16881..17098	TCONS_00040119-exon-sc0002317-1510915933:16881..17098	Clytia hemisphaerica	exon
TCONS_00040119-exon-sc0002317-1575043694:16881..17098	TCONS_00040119-exon-sc0002317-1575043694:16881..17098	Clytia hemisphaerica	exon
TCONS_00040119-exon-sc0002317-1491911889:24026..24397	TCONS_00040119-exon-sc0002317-1491911889:24026..24397	Clytia hemisphaerica	exon
TCONS_00040119-exon-sc0002317-1510915933:24026..24397	TCONS_00040119-exon-sc0002317-1510915933:24026..24397	Clytia hemisphaerica	exon
TCONS_00040119-exon-sc0002317-1575043694:24026..24397	TCONS_00040119-exon-sc0002317-1575043694:24026..24397	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002317	supercontig	sc0002317:16881..24397 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.16924	0	0	0	0	0	0.269675	0	0	0.258743	0	0.276266	0	0.215521	0	0	0	0	0.0335968	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00040119 vs. Swiss-Prot (Human)

BLAST of TCONS_00040119 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00040119 (transcript) - C. hemisphaerica