|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040116 ID=TCONS_00040116|Name=TCONS_00040116|organism=Clytia hemisphaerica|type=transcript|length=2289bp
GTGAGGTAAATCTAATACAGAATAAAATTggtaaataaagtaaaatttAG
TACAAAGTATTGTTGTTAATACCTCTGTATAAAGAGTATTTgtcaacttg
aaaaaataatttagaaaacACGCGATTCACTTCATAAGATTCCTTCCtaa
ctttgaaaaatctttttcaaagatAATGACATCGATCGAACggcttgaaa
attcaaaactaaGTCCTTCGCAACATCCGATAAGATTGTACCAGGATTAA
TATACCACGGATTGTTTGTAGATAGTTTCCAACTGACTTTATCGCAACAG
TACTTGTCTCTTAATTCCAAATTTAATCGCTTGGTAACTTTTTTTACAGT
ATCACTAGAAAAACGAATCGTAACAAGCTCTTCCATGATTTCGGAGTTTC
CACATTgtttacaagaaaaaagtttcacaCAAATGTTTCGATCAACGTAA
AGTTTAACAGTATTTTGAAAGCCGATTTCTCTCTTCATTTGATAAAGATA
CGAATGATCTCCCGGTATCAGATATTCGACAGGACACTGTCTAAGGCGAA
CTGGAAAACAAACTAATTCTGAAACAGCATTAGTCACCTCACTAATAGTC
GATGATTCTTTCATTTCAATTCGGTCATCCAACAAATTATAACAATCTAT
TTCTCTGATTGACCATACAGTCAAATTACGTGGTGGCTTTGATACTAAAT
TTAGAGTCAAGATTCCATCTTTTTTATCGTCAGCGTTGCTTTTGGTCCAA
AAGATTTCTGACAACATATCGTGGGGCTCAAGTTGATGTCCCTCGCAAAG
ATAGATTTGCAAATGGTGAGGGATTTTATACTCTTTGTCCACAAAGTTTT
CTATGGACGATAAAGTATTGTGTTCACGAATATCCAAAGTTTTCGTTTTT
GTAAgcgatttcaaaacaaacattttcaacccaacaatcttgaaaaaata
attttcaagagGATTTATAAGTTCATATTTTCCTGGTACAGGCTGAGGCG
TCACTATTTGAATACAGATATTTTCTTGTGGACCAGCCTGACTAAAAAAC
AAACTATAAAGTTGTTTCTCTGAATTTACAATCATGCCAGATAGAGATTC
AAGATGATATAGGTGATGGGGCAAATTAAATTCTTTTGTGATCTGTGACC
TTAGCTCAGTAAACCAATCTTGGTTTTGGGTTAAAGGTGGGGTTATATTC
TCTAGCGAGATGATCTGATATTTCTCATCTTGAATTTGGATTGAACATAT
CTGTTTTAAACCAAGTTCTTTAATTTTTGAACTTAATTCATTAGATTGCG
ATTGGTTGATCTTGCACATAAGATGTATTACTACCGGACAATCTTTGTCG
TTtttcaaaagaatcttcaaaatCGATCTCCTATCGCTGACATATTCAGC
ATCGTGGTAAAGCACCTGATTTTCAACAGGAATTCCggtttctttttcaa
taaattctttCAAACCAACAACAGTACAATCATTAGTCTTTGGATACCAT
AGAGCTATTTCACGATATTGACTTCCATCATTTTCTCCTTTACAAGTCTT
CAATACTCGAACATAAGGCAATCGCCGACATAAACTAACTCTCGCATCAT
AATGAATATTTATTCTTTCAGATTCTGGTTGACTCAACAAACCGACATAA
ACAACAAAATCTTTATCAAATAGTCCTGCAATCGACATATGGTATAGCCA
TGTCTTGGTACTTTCAATAATAACTTCATTGGTGTAGGGTTTACAGTAAA
AGAAGACTCTACCAAATGGAAATCCACTCAAATATTGTCCATCGTTCTTG
AAATTGGTGAACGAACACAGCCAAGGTCTTACGTAGTTCCCTTGGTACGT
AACAATAGGCTTTTCATCGTTAACACATACACGAATCCGGGGTAAGTTTA
TAACATACTTCTTACTCGAACAAGAGTATGAATTGCTCTGAAAATTCGTC
TTTTCCCCATTTGCGTTATAATTGATTCGAAATAATGCACAATAAACAGT
ACTGGTTGAACTCGAATCCACTGTCCTCCGCTCACTTATTAGATTCTCTT
CGTCAAGTAGAACTTCAAAGTCGTCACCAGATCTTAAGTAAATGACTGCC
TCTacatttttgcttgtttttcttagGAGTTTTCTTTTTACCTCTTTTAC
TGTTGTCGGACCAACATATGGAATATGCGCTATAGTCTGTTCTGACTTCA
CATCAATAATTTCCATAGAATTATTTTCACGAAACGCCATCTTCCcaatt
gagaaaaattttaaaacactaCTTGTGAGCTCTGTTAAG Run BLAST on NCBI transcript from alignment at sc0002317:12857..15145+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040116 ID=TCONS_00040116|Name=TCONS_00040116|organism=Clytia hemisphaerica|type=transcript|length=2289bp|location=Sequence derived from alignment at sc0002317:12857..15145+ (Clytia hemisphaerica)
GTGAGGTAAATCTAATACAGAATAAAATTggtaaataaagtaaaatttAG
TACAAAGTATTGTTGTTAATACCTCTGTATAAAGAGTATTTgtcaacttg
aaaaaataatttagaaaacACGCGATTCACTTCATAAGATTCCTTCCtaa
ctttgaaaaatctttttcaaagatAATGACATCGATCGAACggcttgaaa
attcaaaactaaGTCCTTCGCAACATCCGATAAGATTGTACCAGGATTAA
TATACCACGGATTGTTTGTAGATAGTTTCCAACTGACTTTATCGCAACAG
TACTTGTCTCTTAATTCCAAATTTAATCGCTTGGTAACTTTTTTTACAGT
ATCACTAGAAAAACGAATCGTAACAAGCTCTTCCATGATTTCGGAGTTTC
CACATTgtttacaagaaaaaagtttcacaCAAATGTTTCGATCAACGTAA
AGTTTAACAGTATTTTGAAAGCCGATTTCTCTCTTCATTTGATAAAGATA
CGAATGATCTCCCGGTATCAGATATTCGACAGGACACTGTCTAAGGCGAA
CTGGAAAACAAACTAATTCTGAAACAGCATTAGTCACCTCACTAATAGTC
GATGATTCTTTCATTTCAATTCGGTCATCCAACAAATTATAACAATCTAT
TTCTCTGATTGACCATACAGTCAAATTACGTGGTGGCTTTGATACTAAAT
TTAGAGTCAAGATTCCATCTTTTTTATCGTCAGCGTTGCTTTTGGTCCAA
AAGATTTCTGACAACATATCGTGGGGCTCAAGTTGATGTCCCTCGCAAAG
ATAGATTTGCAAATGGTGAGGGATTTTATACTCTTTGTCCACAAAGTTTT
CTATGGACGATAAAGTATTGTGTTCACGAATATCCAAAGTTTTCGTTTTT
GTAAgcgatttcaaaacaaacattttcaacccaacaatcttgaaaaaata
attttcaagagGATTTATAAGTTCATATTTTCCTGGTACAGGCTGAGGCG
TCACTATTTGAATACAGATATTTTCTTGTGGACCAGCCTGACTAAAAAAC
AAACTATAAAGTTGTTTCTCTGAATTTACAATCATGCCAGATAGAGATTC
AAGATGATATAGGTGATGGGGCAAATTAAATTCTTTTGTGATCTGTGACC
TTAGCTCAGTAAACCAATCTTGGTTTTGGGTTAAAGGTGGGGTTATATTC
TCTAGCGAGATGATCTGATATTTCTCATCTTGAATTTGGATTGAACATAT
CTGTTTTAAACCAAGTTCTTTAATTTTTGAACTTAATTCATTAGATTGCG
ATTGGTTGATCTTGCACATAAGATGTATTACTACCGGACAATCTTTGTCG
TTtttcaaaagaatcttcaaaatCGATCTCCTATCGCTGACATATTCAGC
ATCGTGGTAAAGCACCTGATTTTCAACAGGAATTCCggtttctttttcaa
taaattctttCAAACCAACAACAGTACAATCATTAGTCTTTGGATACCAT
AGAGCTATTTCACGATATTGACTTCCATCATTTTCTCCTTTACAAGTCTT
CAATACTCGAACATAAGGCAATCGCCGACATAAACTAACTCTCGCATCAT
AATGAATATTTATTCTTTCAGATTCTGGTTGACTCAACAAACCGACATAA
ACAACAAAATCTTTATCAAATAGTCCTGCAATCGACATATGGTATAGCCA
TGTCTTGGTACTTTCAATAATAACTTCATTGGTGTAGGGTTTACAGTAAA
AGAAGACTCTACCAAATGGAAATCCACTCAAATATTGTCCATCGTTCTTG
AAATTGGTGAACGAACACAGCCAAGGTCTTACGTAGTTCCCTTGGTACGT
AACAATAGGCTTTTCATCGTTAACACATACACGAATCCGGGGTAAGTTTA
TAACATACTTCTTACTCGAACAAGAGTATGAATTGCTCTGAAAATTCGTC
TTTTCCCCATTTGCGTTATAATTGATTCGAAATAATGCACAATAAACAGT
ACTGGTTGAACTCGAATCCACTGTCCTCCGCTCACTTATTAGATTCTCTT
CGTCAAGTAGAACTTCAAAGTCGTCACCAGATCTTAAGTAAATGACTGCC
TCTacatttttgcttgtttttcttagGAGTTTTCTTTTTACCTCTTTTAC
TGTTGTCGGACCAACATATGGAATATGCGCTATAGTCTGTTCTGACTTCA
CATCAATAATTTCCATAGAATTATTTTCACGAAACGCCATCTTCCcaatt
gagaaaaattttaaaacactaCTTGTGAGCTCTGTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040116-exon-sc0002317-1491911889:12857..15145 | TCONS_00040116-exon-sc0002317-1491911889:12857..15145 | Clytia hemisphaerica | exon |
| TCONS_00040116-exon-sc0002317-1510915933:12857..15145 | TCONS_00040116-exon-sc0002317-1510915933:12857..15145 | Clytia hemisphaerica | exon |
| TCONS_00040116-exon-sc0002317-1575043694:12857..15145 | TCONS_00040116-exon-sc0002317-1575043694:12857..15145 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002317 | supercontig | sc0002317:12857..15145 + |
Blast
The following BLAST results are available for this feature:
|
