TCONS_00040113 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040113
Unique NameTCONS_00040113
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1904

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040113 ID=TCONS_00040113|Name=TCONS_00040113|organism=Clytia hemisphaerica|type=transcript|length=1904bp
AGAAGCTTCAGATGTCGAGATGGATGATACTGATGCTATTGATTTCACGA
TCTTACCTGAAGCAATCGTGGTATTGGACCAACCTGAGGGGCAAGATGAA
TCATGCCACCAAACAACTTTTGCAGCTATTGACATTGATAAATCTATGAA
TGATCCAACAGACGCAAACATAAACCAAACAACGTACACAAATCTTGACA
TGAGTTTATCAATGAATGAATCCATTAATGCAAATATAAATCTTATTGAA
GCGCCACTGGAAGGTAATGCTGCCCATATCCGTGATAAATTGCAGTCTTG
CTTTGATGACCTATGCTCAACAGGGGGTGATGAAGTATTGGATGTTGATA
AAGAACGAGTAATTGTTTCGTTGGAGAAATTGGTCAAGCTGCGTGGGGAT
GTTTGTCAACATCAGCTAGAGGATGGGTTTTGCAACGAGAAAGTCTCTTT
CATGTGGATGAAGGGAAGAGGAACGTGCAAAACGTTGAGATGGAGTTGTC
CCAAAAATCATTATGGGAAATGGGAATCTTCTGAAATAATTGCTTACAGA
GACAAACGACCAATCTATCTGAATGACCTCCTTCTTTCAAGTGGTATTGT
CTTAACTGGCAATAACTGGACCAAATGTGATGCACTCTTCAAAGCATTGA
AAGTCAATGTTCTTGGTAGAAACGCCTTTCATCGAATGCAGAACCTATTC
ATCTCTCCTGAAATACGTGAATTCTGGGATTCTATGCATTCAAGTATATT
GAAAGTACTTGGAGATTACGATGACGTAGGGCTTAGTGGTGATGGTGACT
GTGCGCGCTATTGCACTTATGTAATGATGGACCATGTTTTAAGTATAGTG
GTGGACTTGGCTGTACTTGATTGCAGAGAAACGGAAGGAATTTCCACAAG
GATGGAAAAAGAGGGTCTTGTAAGACTCTTGAAGAAATTACAAGATAAAC
TCCATATCTCTGAAGTTACGACAGATGCTTCTTCCTCAGTTATAAAAGCA
GTCAGGGAACTGAAGGATCAATACCCGAGTCTTTCAAAATTAGTTCACTC
TCTGGACACCTGACACAAAGCCAAGTCTCTGCGAAAGGCACTTTCAGCCG
CAGGCAAAACCAAAGAAGGTGAACCGTTATCAGTTTGGGCCGAGCCTATT
GTCAATCATTTCTGGCACTGTTGTCAAAACTGCAACACTGACTTGGACAA
ATTAAAGGATATGTGGCTTGGTGTCCTGCACCATGTATGTGGTGAGCACG
TATGGGCAACAGGTGAATGCTCCCATGGAGAACTTCATAAAGATGACGAA
AAGAAAACTCCCTTGGCCAAAGATTCTAAAGCTATGGAATTGCTGGGAAA
GATCGTATTGGATCGTACTTTTGTAGATCATTTAAAGTTCTACACACGAT
TCAGACACACTGGCCCAATTGAGAATTTCAACAGCATGATGCTCAAATAC
GCTCCTAAACGTAACGCATTTGAATTTCAGTATTATACTGACCGGATGTA
CCTGGCTGCTGTGGACCATAATTTGCACCTTTTTCGTGAAAATCTGAAAA
CCAAAAGTGGACGACAAATTTACGCAAGGAAATATGGCAAAAGGACTAAA
AGGTGGCACGCACAACCACTTAAGGCACCTAAATCCTACCCTCACACCTC
TACAATTATGGCTAAGATTATCAAAAGACGGAAGAACTATACAAATCCTT
TGCCACCTCGAGCAACTAAATTACCCAATGATCCAAAGCTTATATTACCA
ACCATTGGTGGCAAACCTCCGAGTACCAGGATACTTATAAAAGAACATAT
ATCTAGAGTAGATCAAAGTAAATGATGCATCAGTACTTTTCATTTTATAT
TCTATTTAACGTATGACACTGTATGACATTTAATTTTTTTATTTTATTCT
TCCT
Run BLAST on NCBI

protein sequence of TCONS_00040113-protein

>TCONS_00040113-protein ID=TCONS_00040113-protein|Name=TCONS_00040113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
EASDVEMDDTDAIDFTILPEAIVVLDQPEGQDESCHQTTFAAIDIDKSMN
DPTDANINQTTYTNLDMSLSMNESINANINLIEAPLEGNAAHIRDKLQSC
FDDLCSTGGDEVLDVDKERVIVSLEKLVKLRGDVCQHQLEDGFCNEKVSF
MWMKGRGTCKTLRWSCPKNHYGKWESSEIIAYRDKRPIYLNDLLLSSGIV
LTGNNWTKCDALFKALKVNVLGRNAFHRMQNLFISPEIREFWDSMHSSIL
KVLGDYDDVGLSGDGDCARYCTYVMMDHVLSIVVDLAVLDCRETEGISTR
MEKEGLVRLLKKLQDKLHISEVTTDASSSVIKAVRELKDQYPSLSKLVHS
LDT
Run BLAST on NCBI

transcript from alignment at sc0002315:21351..24122-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040113 ID=TCONS_00040113|Name=TCONS_00040113|organism=Clytia hemisphaerica|type=transcript|length=2772bp|location=Sequence derived from alignment at sc0002315:21351..24122- (Clytia hemisphaerica)
AGAAGCTTCAGATGTCGAGATGGATGATACTGATGCTATTGATTTCACGA
TCTTACCTGAAGCAATCGTGGTATTGGACCAACCTGAGGGGCAAGATGAA
TCATGCCACCAAACAACTTTTGCAGCTATTGACATTGATAAATCTATGAA
TGATCCAACAGACGCAAACATAAACCAAACAACGTACACAAATCTTGACA
TGAGTTTATCAATGAATGAATCCATTAATGCAAATATAAATCTTATTGGT
AAGGTTAATTTAAAGTACTGTTATGATCTAGAGAGAAAGTAAAGTCAATA
TAATTTATCGAAATTTGTGCTTGCGTGGCACTGGAATGAGAGAAATTTGC
TCTCTTTTTGTTTAAAAGCTTGCATTTTAAGCAAAAATATTGTACTTTTT
TTAAACTTGTAAGAATGTCCTCAACTCTCACCTGTCATACATTATCATTC
GGTTCTTTGTCTCATCCCCCTACATAAGAGGGGTGCTCAAACTGTTGTGG
CCCCTCGTTGTAGCCACAAATTTTATTGTGTTTAAATTTTATTTTTTTCA
GAAGCGCCACTGGAAGGTAATGCTGCCCATATCCGTGATAAATTGCAGTC
TTGCTTTGATGACCTATGCTCAACAGGGGGTGATGAAGTATTGGATGTTG
ATAAAGAACGAGTAATTGTTTCGTTGGAGAAATTGGTCAAGCTGCGTGGG
GATGTTTGTCAACATCAGCTAGAGGATGGGTTTTGCAACGAGAAAGTCTC
TTTCATGTGGATGAAGGGAAGAGGAACGTGCAAAACGTTGAGATGGAGTT
GTCCCAAAAATCATTATGGGAAATGGGAATCTTCTGAAATAATTGCTTAC
AGAGACAAACGACCAATCTATCTGAATGACCTCCTTCTTTCAAGTGGTAT
TGTCTTAACTGGCAATAACTGGACCAAATGTGATGCACTCTTCAAAGCAT
TGAAAGTCAATGTTCTTGGTAGAAACGCCTTTCATCGAATGCAGAACCTA
TTCATCTCTCCTGAAATACGTGAATTCTGGGATTCTATGCATTCAAGTAT
ATTGAAAGTACTTGGAGATTACGATGACGTAGGGCTTAGTGGTGATGGTG
ACTGTGCGCGCTATTGCACTTATGTAATGATGGACCATGTTTTAAGTATA
GTGGTGGACTTGGCTGTACTTGATTGCAGAGAAACGGAAGGAATTTCCAC
AAGGATGGAAAAAGAGGGTCTTGTAAGACTCTTGAAGAAATTACAAGATA
AACTCCATATCTCTGAAGTTACGACAGATGCTTCTTCCTCAGTTATAAAA
GCAGTCAGGGAACTGAAGGATCAATACCCGAGTCTTTCAAAATTAGTTCA
CTCTCTGGACACCTGACACAAAGCCAAGTCTCTGCGAAAGGCACTTTCAG
CCGCAGGCAAAACCAAAGAAGGTGAACCGTTATCAGTTTGGGCCGAGCCT
ATTGTCAATCATTTCTGGCACTGTTGTCAAAACTGCAACACTGACTTGGA
CAAATTAAAGGTAATTTACTCGTTTCAATTCGAATTTTATTTTGATTTAC
TTTCATAGGAAAATGTACATCACCCGGTAGGTTTACTCAGATATTTGACT
TGGGATGGTGTGACAACAATTTTTAGAAGGTTGAAGTTGTTTTTAAAAGT
TTTTGACTGTTCATAGTCTCTGGAGGAGTTTCCCTTACATAGGAAGACCC
CCCCCCCTCTGCTGACGTTACGCATTTTGACCAAAAACCTGGACTCTCAT
TTATGTTTTATACATTGCAGCAGCCAATGGAATTTAAGTTTTCTTCCCGC
AAAAAGTTTTACAGCAACATTTTAGAAAATTTTCATGGATTTGGATATCT
AACTAGATTTCAATTTTTATATTTTAGGATATGTGGCTTGGTGTCCTGCA
CCATGTATGTGGTGAGCACGTATGGGCAACAGGTGAATGCTCCCATGGAG
AACTTCATAAAGATGACGAAAAGAAAACTCCCTTGGCCAAAGATTCTAAA
GCTATGGAATTGCTGGGAAAGATCGTATTGGATCGTACTTTTGTAGATCA
TTTAAAGTTCTACACACGATTCAGGTGAGGATCTAATTTTACTATTTTAG
ATAATCCATCTTGTCCATATCAGAAAGATCGCTTTGAAACTTCACAGATT
TTCCAAGTCTCTCCCCCAATTTCCGCTTATATAATCACCTTGCATTAAAA
TGATGAAAAGGAACTCACTGGGAGTAAATTCTGAAACTGAATTTAAAGTC
ATGATTTGTTTTTCTTTCATAGACACACTGGCCCAATTGAGAATTTCAAC
AGCATGATGCTCAAATACGCTCCTAAACGTAACGCATTTGAATTTCAGTA
TTATACTGACCGGATGTACCTGGCTGCTGTGGACCATAATTTGCACCTTT
TTCGTGAAAATCTGAAAACCAAAAGTGGACGACAAATTTACGCAAGGAAA
TATGGCAAAAGGACTAAAAGGTGGCACGCACAACCACTTAAGGCACCTAA
ATCCTACCCTCACACCTCTACAATTATGGCTAAGATTATCAAAAGACGGA
AGAACTATACAAATCCTTTGCCACCTCGAGCAACTAAATTACCCAATGAT
CCAAAGCTTATATTACCAACCATTGGTGGCAAACCTCCGAGTACCAGGAT
ACTTATAAAAGAACATATATCTAGAGTAGATCAAAGTAAATGATGCATCA
GTACTTTTCATTTTATATTCTATTTAACGTATGACACTGTATGACATTTA
ATTTTTTTATTTTATTCTTCCT

Coding sequence (CDS) from alignment at sc0002315:21351..24122-

>TCONS_00040113 ID=TCONS_00040113|Name=TCONS_00040113|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at sc0002315:21351..24122- (Clytia hemisphaerica)
AAGCGCCACTGGAAGGTAATGCTGCCCATATCCGTGATAAATTGCAGTCT
TGCTTTGATGACCTATGCTCAACAGGGGGTGATGAAGTATTGGATGTTGA
TAAAGAACGAGTAATTGTTTCGTTGGAGAAATTGGTCAAGCTGCGTGGGG
ATGTTTGTCAACATCAGCTAGAGGATGGGTTTTGCAACGAGAAAGTCTCT
TTCATGTGGATGAAGGGAAGAGGAACGTGCAAAACGTTGAGATGGAGTTG
TCCCAAAAATCATTATGGGAAATGGGAATCTTCTGAAATAATTGCTTACA
GAGACAAACGACCAATCTATCTGAATGACCTCCTTCTTTCAAGTGGTATT
GTCTTAACTGGCAATAACTGGACCAAATGTGATGCACTCTTCAAAGCATT
GAAAGTCAATGTTCTTGGTAGAAACGCCTTTCATCGAATGCAGAACCTAT
TCATCTCTCCTGAAATACGTGAATTCTGGGATTCTATGCATTCAAGTATA
TTGAAAGTACTTGGAGATTACGATGACGTAGGGCTTAGTGGTGATGGTGA
CTGTGCGCGCTATTGCACTTATGTAATGATGGACCATGTTTTAAGTATAG
TGGTGGACTTGGCTGTACTTGATTGCAGAGAAACGGAAGGAATTTCCACA
AGGATGGAAAAAGAGGGTCTTGTAAGACTCTTGAAGAAATTACAAGATAA
ACTCCATATCTCTGAAGTTACGACAGATGCTTCTTCCTCAGTTATAAAAG
CAGTCAGGGAACTGAAGGATCAATACCCGAGTCTTTCAAAATTAGTTCAC
TCTCTGGACACCTGAGAAGCTTCAGATGTCGAGATGGATGATACTGATGC
TATTGATTTCACGATCTTACCTGAAGCAATCGTGGTATTGGACCAACCTG
AGGGGCAAGATGAATCATGCCACCAAACAACTTTTGCAGCTATTGACATT
GATAAATCTATGAATGATCCAACAGACGCAAACATAAACCAAACAACGTA
CACAAATCTTGACATGAGTTTATCAATGAATGAATCCATTAATGCAAATA
TAAATCTTATTGAAGCGCCACTGGAAGGTAATGCTGCCCATATCCGTGAT
AAATTGCAGTCTTGCTTTGATGACCTATGCTCAACAGGGGGTGATGAAGT
ATTGGATGTTGATAAAGAACGAGTAATTGTTTCGTTGGAGAAATTGGTCA
AGCTGCGTGGGGATGTTTGTCAACATCAGCTAGAGGATGGGTTTTGCAAC
GAGAAAGTCTCTTTCATGTGGATGAAGGGAAGAGGAACGTGCAAAACGTT
GAGATGGAGTTGTCCCAAAAATCATTATGGGAAATGGGAATCTTCTGAAA
TAATTGCTTACAGAGACAAACGACCAATCTATCTGAATGACCTCCTTCTT
TCAAGTGGTATTGTCTTAACTGGCAATAACTGGACCAAATGTGATGCACT
CTTCAAAGCATTGAAAGTCAATGTTCTTGGTAGAAACGCCTTTCATCGAA
TGCAGAACCTATTCATCTCTCCTGAAATACGTGAATTCTGGGATTCTATG
CATTCAAGTATATTGAAAGTACTTGGAGATTACGATGACGTAGGGCTTAG
TGGTGATGGTGACTGTGCGCGCTATTGCACTTATGTAATGATGGACCATG
TTTTAAGTATAGTGGTGGACTTGGCTGTACTTGATTGCAGAGAAACGGAA
GGAATTTCCACAAGGATGGAAAAAGAGGGTCTTGTAAGACTCTTGAAGAA
ATTACAAGATAAACTCCATATCTCTGAAGTTACGACAGATGCTTCTTCCT
CAGTTATAAAAGCAGTCAGGGAACTGAAGGATCAATACCCGAGTCTTTCA
AAATTAGTTCACTCTCTGGACACCTGAGAAGCTTCAGATGTCGAGATGGA
TGATACTGATGCTATTGATTTCACGATCTTACCTGAAGCAATCGTGGTAT
TGGACCAACCTGAGGGGCAAGATGAATCATGCCACCAAACAACTTTTGCA
GCTATTGACATTGATAAATCTATGAATGATCCAACAGACGCAAACATAAA
CCAAACAACGTACACAAATCTTGACATGAGTTTATCAATGAATGAATCCA
TTAATGCAAATATAAATCTTATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024327XLOC_024327Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040113-proteinTCONS_00040113-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040113-exon-sc0002315-1575043694:23875..24122TCONS_00040113-exon-sc0002315-1575043694:23875..24122Clytia hemisphaericaexon
TCONS_00040113-exon-sc0002315-1575043694:22613..23571TCONS_00040113-exon-sc0002315-1575043694:22613..23571Clytia hemisphaericaexon
TCONS_00040113-exon-sc0002315-1575043694:22049..22245TCONS_00040113-exon-sc0002315-1575043694:22049..22245Clytia hemisphaericaexon
TCONS_00040113-exon-sc0002315-1575043694:21351..21850TCONS_00040113-exon-sc0002315-1575043694:21351..21850Clytia hemisphaericaexon
TCONS_00040113-exon-sc0002315-1510915933:23875..24122TCONS_00040113-exon-sc0002315-1510915933:23875..24122Clytia hemisphaericaexon
TCONS_00040113-exon-sc0002315-1510915933:22613..23571TCONS_00040113-exon-sc0002315-1510915933:22613..23571Clytia hemisphaericaexon
TCONS_00040113-exon-sc0002315-1510915933:22049..22245TCONS_00040113-exon-sc0002315-1510915933:22049..22245Clytia hemisphaericaexon
TCONS_00040113-exon-sc0002315-1510915933:21351..21850TCONS_00040113-exon-sc0002315-1510915933:21351..21850Clytia hemisphaericaexon
TCONS_00040113-exon-sc0002315-1491911889:23875..24122TCONS_00040113-exon-sc0002315-1491911889:23875..24122Clytia hemisphaericaexon
TCONS_00040113-exon-sc0002315-1491911889:22613..23571TCONS_00040113-exon-sc0002315-1491911889:22613..23571Clytia hemisphaericaexon
TCONS_00040113-exon-sc0002315-1491911889:22049..22245TCONS_00040113-exon-sc0002315-1491911889:22049..22245Clytia hemisphaericaexon
TCONS_00040113-exon-sc0002315-1491911889:21351..21850TCONS_00040113-exon-sc0002315-1491911889:21351..21850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002315supercontigsc0002315:21351..24122 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.648855	0.836845	0.142194	0.1623	3.55652	2.2751	1.93751	2.54446	1.023	1.70411	1.25114	1.70066	1.03011	1.11315	1.42623	1.9132	0.722784	1.11124	1.424	1.2964	1.63921	1.65832	1.12795	1.72366	0.157307	0.26073	1.32021	1.37834	0.557558	0.378709
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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