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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040112 ID=TCONS_00040112|Name=TCONS_00040112|organism=Clytia hemisphaerica|type=transcript|length=1017bp
TCTGTGTTTTGTTTTAGGTTTTTGGCTCTTAGCGTCTCTTTATAAGGTAA
GAGAGGCATAGGGTCACACCGTCTTCTCACAGACAAGATAGGAATCTTTT
Agcaagtggggataaaaataattcgatgggaattgttacttttttatggt
tggggatttgaattgagctgttttcaagtcagaaagttCTGTGTGGTGGA
GAAGGTAGCACACATAGCCTGGAAATCCAAGCGTTGAACTTTTCCATAGT
CTaggaatgaaatcaaagtcaacaTCCCATAGGGGacgaaattttgccaa
attttttttgctggtcgcaaagggtcggtgatacaggggtgttttaattt
tttaatttcttttgttttagaattaaaaaAGGAATTACCAAAACCATACG
ACAATGATTAACCTTGAACAACGGTCCACCACTTCCCTGATGAAGATTTA
AAACCGCAACTTCAAACTAGTTAATGAAGAAGAGCACAAAATTCGTTTGA
TTTTCAAGAAAGCCCGATGACAAGTTGGGAGCATTTGCTGATATCTGTTT
ATGGCATCATGAAATCGGTTAATCAATCACTGGGTATTTTGTTCAAGTTG
TTGTTTATTCTTACAAAGCCTCCTATGGCAACTTTTTAGCTGGAAGTCCA
AGAAAACAGCAACTGCCAATTGGTCAACTGTGTTCAACCATCAACCGCTA
GAATTAAATTATGTTGATGGCTATTCCTAGCTACCATTAACTACAAATTG
TGAATCAAGTTTTCAGGTTTGACaaaacgatgaaatgctgaggAGAGGTT
TTCTTTGGAATTCAAGTAGCGCAAGTACGACATCATATTCTAGGATCCAG
AAATTACTTCTAATTAAAGACAATTAAAGACTTGAAACAAGATGGATAGC
ATCACGAAAATCGACCAACCCGGTAGAGaatttttttcgtgacttttttc
atatttctatgTTTTGATAAACTCAGGAAATATTTTCCATAAAGATTATT
TCACACtccaaaaaaac Run BLAST on NCBI transcript from alignment at sc0002314:1782..3813+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040112 ID=TCONS_00040112|Name=TCONS_00040112|organism=Clytia hemisphaerica|type=transcript|length=2032bp|location=Sequence derived from alignment at sc0002314:1782..3813+ (Clytia hemisphaerica)
TCTGTGTTTTGTTTTAGGTTTTTGGCTCTTAGCGTCTCTTTATAAGGTAA
GAGAGGCATAGGGTCACACCGTCTTCTCACAGACAAGATAGGAATCTTTT
Agcaagtggggataaaaataattcgatgggaattgttacttttttatggt
tggggatttgaattgagctgttttcaagtcagaaagttCTGTGTGGTGGA
GAAGGTAGCACACATAGCCTGGAAATCCAAGCGTTGAACTTTTCCATAGT
CTaggaatgaaatcaaagtcaacaTCCCATAGGGGacgaaattttgccaa
attttttttgctggtcgcaaagggtcggtgatacaggggtgttttaattt
tttaatttcttttgttttagaattaaaaaAGGAATTACCAAAACCATACG
ACAATGATTAACCTTGAACAACGGTCCACCACTTCCCTGATGAAGATTTA
AAACCGCAACTTCAAACTAGTTAATGAAGAAGAGCACAAAATTCGgtaaa
ttattattttcatcattgaAATTGCACTTATGATATCCCTTTCTTCCTCG
AGATAACCAAGGCAAGGAAAAAGGTTTTTGAACAGTGTTCACTCAAAACT
TTAGTTATATACTATGAAAGACTGAAGAAAATTTATGGGTTCCAAGTTAC
ATAAAGACCAGAAAAGATTTTGACACTTTTCCTTTGTCTTTCTTCAGTTT
GATTTTCAAGAAAGCCCGATGACAAGTTGGGAGCATTTGCTGATATCTGT
TTATGGCATCATGAAATCGGTTAATCAATCACTGGGTATTTTGTTCAAGT
TGTTGTTTATTCTTACAAAGCCTCCTATGGCAACTTTTTAGGTGAGTTTA
AATTATATCATTATGTTAAATCTAAGAAGATGTCTTCAGAGTTTCTAAAT
GCACTGTTTGGCATAATACTAAAAAATGGCTATTGTCTATAAAGGAGGTC
CCCAGTCACCTCTCAAATCACACTATCGCGGCAAAAAGTCACGTTGTCAA
CTTTATCACGAGTTTAAAACGAGTTTCTGTCACGATCAcgttttaaatct
taaatcgCGAACTAGAAAAACGCTagtcacgccatcacgaaaaccatAGG
GGAAAGGTCTCAAATTGATGCATTCCTGAAAGCCTTACAAAACAAGATGG
TTTCAAACATTCTCCTAAATAATTTTGTTTGTCTTTTATAATTTTCTCAT
CAAGTTGGATCAGCATTTTCTTCTATTCTTAatcatttctaaaaaaatat
atttttgtttcttattaGCTGGAAGTCCAAGAAAACAGCAACTGCCAATT
GGTCAACTGTGTTCAACCATCAACCGCTAGAATTAAATTATGTTGATGGC
TATTCCTAGCTACCATTAACTACAAATTGTGAATCAAGTTTTCAGGTAAC
AGTCATTTTCATTCTCCTTAAAGGCAACTCTGGCTCTCTTTTGAGTGGCT
TACTAGGTTTGCGAAGGGACGGGTATtggaaaatcgaccctttgagagac
taaaTTTCGACGTTTGTACGATCCTTTATAAGACTATTTTTCCTATACTT
AGCTCAAAATCAAGATTTTATGAACCTTTGAGGAAgtcgatttttgatat
tttataatttttgggAGATTCAATTGCAACAAGTTTAATTTCATAGACTT
TCTCAGCCGTTAAAAGAGGAGAAATCGTCCATTTTGTTTTATCATTCATT
ATTTCTTTTCGATCCCAGTATATGTCAAGTCACTGTGATTTCTGTTCAGA
GCCTATTCTATATTACCTTTTGTCTCTTCAGGTTTGACaaaacgatgaaa
tgctgaggAGAGGTTTTCTTTGGAATTCAAGTAGCGCAAGTACGACATCA
TATTCTAGGATCCAGAAATTACTTCTAATTAAAGACAATTAAAGACTTGA
AACAAGATGGATAGCATCACGAAAATCGACCAACCCGGTAGAGaattttt
ttcgtgacttttttcatatttctatgTTTTGATAAACTCAGGAAATATTT
TCCATAAAGATTATTTCACACtccaaaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040112-exon-sc0002314-1491911889:1782..2276 | TCONS_00040112-exon-sc0002314-1491911889:1782..2276 | Clytia hemisphaerica | exon |
| TCONS_00040112-exon-sc0002314-1510915933:1782..2276 | TCONS_00040112-exon-sc0002314-1510915933:1782..2276 | Clytia hemisphaerica | exon |
| TCONS_00040112-exon-sc0002314-1575043694:1782..2276 | TCONS_00040112-exon-sc0002314-1575043694:1782..2276 | Clytia hemisphaerica | exon |
| TCONS_00040112-exon-sc0002314-1491911889:2479..2622 | TCONS_00040112-exon-sc0002314-1491911889:2479..2622 | Clytia hemisphaerica | exon |
| TCONS_00040112-exon-sc0002314-1510915933:2479..2622 | TCONS_00040112-exon-sc0002314-1510915933:2479..2622 | Clytia hemisphaerica | exon |
| TCONS_00040112-exon-sc0002314-1575043694:2479..2622 | TCONS_00040112-exon-sc0002314-1575043694:2479..2622 | Clytia hemisphaerica | exon |
| TCONS_00040112-exon-sc0002314-1491911889:3050..3176 | TCONS_00040112-exon-sc0002314-1491911889:3050..3176 | Clytia hemisphaerica | exon |
| TCONS_00040112-exon-sc0002314-1510915933:3050..3176 | TCONS_00040112-exon-sc0002314-1510915933:3050..3176 | Clytia hemisphaerica | exon |
| TCONS_00040112-exon-sc0002314-1575043694:3050..3176 | TCONS_00040112-exon-sc0002314-1575043694:3050..3176 | Clytia hemisphaerica | exon |
| TCONS_00040112-exon-sc0002314-1491911889:3563..3813 | TCONS_00040112-exon-sc0002314-1491911889:3563..3813 | Clytia hemisphaerica | exon |
| TCONS_00040112-exon-sc0002314-1510915933:3563..3813 | TCONS_00040112-exon-sc0002314-1510915933:3563..3813 | Clytia hemisphaerica | exon |
| TCONS_00040112-exon-sc0002314-1575043694:3563..3813 | TCONS_00040112-exon-sc0002314-1575043694:3563..3813 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002314 | supercontig | sc0002314:1782..3813 + |
Blast
The following BLAST results are available for this feature:
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