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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040109 ID=TCONS_00040109|Name=TCONS_00040109|organism=Clytia hemisphaerica|type=transcript|length=2261bpRun BLAST on NCBI protein sequence of TCONS_00040109-protein >TCONS_00040109-protein ID=TCONS_00040109-protein|Name=TCONS_00040109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=753bp KLTALFSDYAFLWTQDINTVFKEFLAGNLRCRPQASDANDGESIEMADGRRun BLAST on NCBI transcript from alignment at sc0002312:2146..25734+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00040109 ID=TCONS_00040109|Name=TCONS_00040109|organism=Clytia hemisphaerica|type=transcript|length=23589bp|location=Sequence derived from alignment at sc0002312:2146..25734+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0002312:2146..25734+ >TCONS_00040109 ID=TCONS_00040109|Name=TCONS_00040109|organism=Clytia hemisphaerica|type=CDS|length=40662bp|location=Sequence derived from alignment at sc0002312:2146..25734+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00040109 vs. Swiss-Prot (Human)
Match: DYH9 (Dynein heavy chain 9, axonemal OS=Homo sapiens GN=DNAH9 PE=1 SV=3) HSP 1 Score: 140.969 bits (354), Expect = 5.417e-34 Identity = 101/411 (24.57%), Postives = 194/411 (47.20%), Query Frame = 3
Query: 336 PNIDDFDHEISVFKEAKEEVGRAD-IAHSIGWVRINMQPIKETIETYASKWLYTYTKYLSDQVHLMLNSLDSFLKRTEPGIEAITGEESDVASFMKLMRIFNEVNRQQSELDNNFIKMKDMLEVLDKYNQKLPAKTQAFYEAAPVRWNNLKMKVSQAKKKLGPRIQAKHKDVAEVLSQFKTQCQELRYEIEDSNVYSRSIEMSMAYTLIDQFGKEVELLEAESHDLVELQELLEKEIFDFNLIKTLKNELALLQQIWDINKVIKDQQTEWKRHRWQRIKTKLLKRGLDAQYDLVMKLSDRVHSWDVTLCLEETINEFMSCIPIMEDLGKAALRSRHWKQLARSMGTSVIMTTEVLNRMTLDEFLKLGLQNHSDEVRSIVKRSSKDVHIENMLKLYEEIWLSKVFETKRHSR 1565
P + F +I ++ EEV R + I GW++I+++P K ++ +W + ++L D V L +LD+F+K++E G+ E+ D +++M V +QS D F +K +E+L Y Q+LP E P +WNN+K K+++ P + + + + F + Q+ + + + + ++D E++ +E+ + E L E + D+ ++ + E+ L+++WD ++ W+ W+ I + ++ + L V +WD LE T+ +S + + +L A+R RHW+QL ++ G S M + TL L+L L ++ DEVR IV +++K++ +E LK + W F+ + H R
Sbjct: 1053 PLLSQFKVQIDSYETLYEEVCRLEPIKVFDGWMKIDIRPFKASLLNIIKRWSLLFKQHLVDHVTHSLANLDAFIKKSESGLLKKV-EKGDFQGLVEIMGHLMAVKERQSNTDEMFEPLKQTIELLKTYEQELPETVFKQLEELPEKWNNIKKVAITVKQQVAPLQANEVTLLRQRCTAFDAEQQQFWEQFHKEAPF--RFDSIHPHQMLDARHIEIQQMESTMASISESASLFEVNVPDYKQLRQCRKEVCQLKELWDTIGMVTSSIHAWETTPWRNINVEAMELECKQFARHIRNLDKEVRAWDAFTGLESTVWNTLSSLRAVAELQNPAIRERHWRQLMQATGVSFTMDQDT----TLAHLLQLQLHHYEDEVRGIVDKAAKEMGMEKTLKELQTTWAGMEFQYEPHPR 1456 The following BLAST results are available for this feature:
BLAST of TCONS_00040109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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