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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040107 ID=TCONS_00040107|Name=TCONS_00040107|organism=Clytia hemisphaerica|type=transcript|length=1204bp
CTTTTTTGTTTAGgacaatttttgttcaaaaatataaacaaataattttc
aaagaaataatttGCGATTTTACGACCTTGCAAAAGTTTGTACAATTATC
AAAGAATTAAAGTAAGcccataaaaaacatttttctatcAATATATAGTA
AAATTATAATATTatgattaataaaaaaatttttaaaattttagttttag
atAGTATTCAAAGTTTGATGTAGCTGTTCATTATCCATGAATTCAACTTT
ATTCAATGCTTTTTGCACCAGTATCTTAGCAACAGCTCTTTGTTTGTCAG
AAAATTGACTTAACTGTCCTTCGACTTGTTTGAAAAACAATAGATCTTTC
TCATTGCTTTCTAAACTTTTAACTAACTCAGAAGCGAGTGGATTTTTAGT
TTCTGCAGTATTTGAAATTTGTGCTGAAGCACGTTTCGTTCTTACATATT
CAATCTCTGttcgttttcgttttcttcttgGATGCGAGTTCctcttttgt
ttatttgttgtGGAATATTTTTGTGGCAGATTATCGCTTTTGAATTTCTC
ATTGGTTATCTCATCATTATCTTCTGATGATATTGATGAAGATCCAGTAA
TCGCTGGTGTTGATGTTGATGAGAGGTTGTTAGGATTATTCGAATCTGAA
TAAGCAGGATCCATGTCATCAAATGTTGTCGAAGCCGTTGAATGCTCTGT
ATTTGAAGCACCGGACCTAGCCGGTAAGCGATTAATAGCTGAAAGGTTTT
GTTGATGAATGGGATTAGAATCAGGTTCGTCTGAAAAGCAAGGAGTATTT
TCAGTAAGATGCTTTCTGCTCATTTTTGGAAAGTCTGAAGAAGTTGTCGG
TACGTTATTGCACGGTAAAAGAATCCTTTCACTATCAGCTTGACCAATAG
AAATACTGGAAGTAAGTCCTGCAGAAATATGTTCCTTGGTGTTTTGGTAC
GATTGACAACTCACGTTCCCCCTTTGATTGTCGTGTTTGTTTGTCAATGG
CAAGGAAGAAGTCTGTTCCGCTACCAAAGACTTAGACTCTTGGTCTGCGT
TTTGTACATGTCTCGTCTCCATATCATTATTATCATCCGATAAACAGAAT
ACTGGCACATCATTTGGGGAGGTTTTATCAAAATCAACACCTGTGCTCGA
TATGGTGTCATCGGAATATAAAGATGTATGATGAGAATGGATTGCTTTTG
GCAA Run BLAST on NCBI protein sequence of TCONS_00040107-protein >TCONS_00040107-protein ID=TCONS_00040107-protein|Name=TCONS_00040107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
LPKAIHSHHTSLYSDDTISSTGVDFDKTSPNDVPVFCLSDDNNDMETRHV
QNADQESKSLVAEQTSSLPLTNKHDNQRGNVSCQSYQNTKEHISAGLTSS
ISIGQADSERILLPCNNVPTTSSDFPKMSRKHLTENTPCFSDEPDSNPIH
QQNLSAINRLPARSGASNTEHSTASTTFDDMDPAYSDSNNPNNLSSTSTP
AITGSSSISSEDNDEITNEKFKSDNLPQKYSTTNKQKRNSHPRRKRKRTE
IEYVRTKRASAQISNTAETKNPLASELVKSLESNEKDLLFFKQVEGQLSQ
FSDKQRAVAKILVQKALNKVEFMDNEQLHQTLNTI Run BLAST on NCBI transcript from alignment at sc0002308:11027..12230 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040107 ID=TCONS_00040107|Name=TCONS_00040107|organism=Clytia hemisphaerica|type=transcript|length=1204bp|location=Sequence derived from alignment at sc0002308:11027..12230 (Clytia hemisphaerica)
TTGCCAAAAGCAATCCATTCTCATCATACATCTTTATATTCCGATGACAC
CATATCGAGCACAGGTGTTGATTTTGATAAAACCTCCCCAAATGATGTGC
CAGTATTCTGTTTATCGGATGATAATAATGATATGGAGACGAGACATGTA
CAAAACGCAGACCAAGAGTCTAAGTCTTTGGTAGCGGAACAGACTTCTTC
CTTGCCATTGACAAACAAACACGACAATCAAAGGGGGAACGTGAGTTGTC
AATCGTACCAAAACACCAAGGAACATATTTCTGCAGGACTTACTTCCAGT
ATTTCTATTGGTCAAGCTGATAGTGAAAGGATTCTTTTACCGTGCAATAA
CGTACCGACAACTTCTTCAGACTTTCCAAAAATGAGCAGAAAGCATCTTA
CTGAAAATACTCCTTGCTTTTCAGACGAACCTGATTCTAATCCCATTCAT
CAACAAAACCTTTCAGCTATTAATCGCTTACCGGCTAGGTCCGGTGCTTC
AAATACAGAGCATTCAACGGCTTCGACAACATTTGATGACATGGATCCTG
CTTATTCAGATTCGAATAATCCTAACAACCTCTCATCAACATCAACACCA
GCGATTACTGGATCTTCATCAATATCATCAGAAGATAATGATGAGATAAC
CAATGAGAAATTCAAAAGCGATAATCTGCCACAAAAATATTCCacaacaa
ataaacaaaagagGAACTCGCATCcaagaagaaaacgaaaacgaaCAGAG
ATTGAATATGTAAGAACGAAACGTGCTTCAGCACAAATTTCAAATACTGC
AGAAACTAAAAATCCACTCGCTTCTGAGTTAGTTAAAAGTTTAGAAAGCA
ATGAGAAAGATCTATTGTTTTTCAAACAAGTCGAAGGACAGTTAAGTCAA
TTTTCTGACAAACAAAGAGCTGTTGCTAAGATACTGGTGCAAAAAGCATT
GAATAAAGTTGAATTCATGGATAATGAACAGCTACATCAAACTTTGAATA
CTatctaaaactaaaattttaaaaatttttttattaatcatAATATTATA
ATTTTACTATATATTgatagaaaaatgttttttatgggCTTACTTTAATT
CTTTGATAATTGTACAAACTTTTGCAAGGTCGTAAAATCGCaaattattt
ctttgaaaattatttgtttatatttttgaacaaaaattgtcCTAAACAAA
AAAG Coding sequence (CDS) from alignment at sc0002308:11027..12230 >TCONS_00040107 ID=TCONS_00040107|Name=TCONS_00040107|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at sc0002308:11027..12230 (Clytia hemisphaerica)
TTGCCAAAAGCAATCCATTCTCATCATACATCTTTATATTCCGATGACAC
CATATCGAGCACAGGTGTTGATTTTGATAAAACCTCCCCAAATGATGTGC
CAGTATTCTGTTTATCGGATGATAATAATGATATGGAGACGAGACATGTA
CAAAACGCAGACCAAGAGTCTAAGTCTTTGGTAGCGGAACAGACTTCTTC
CTTGCCATTGACAAACAAACACGACAATCAAAGGGGGAACGTGAGTTGTC
AATCGTACCAAAACACCAAGGAACATATTTCTGCAGGACTTACTTCCAGT
ATTTCTATTGGTCAAGCTGATAGTGAAAGGATTCTTTTACCGTGCAATAA
CGTACCGACAACTTCTTCAGACTTTCCAAAAATGAGCAGAAAGCATCTTA
CTGAAAATACTCCTTGCTTTTCAGACGAACCTGATTCTAATCCCATTCAT
CAACAAAACCTTTCAGCTATTAATCGCTTACCGGCTAGGTCCGGTGCTTC
AAATACAGAGCATTCAACGGCTTCGACAACATTTGATGACATGGATCCTG
CTTATTCAGATTCGAATAATCCTAACAACCTCTCATCAACATCAACACCA
GCGATTACTGGATCTTCATCAATATCATCAGAAGATAATGATGAGATAAC
CAATGAGAAATTCAAAAGCGATAATCTGCCACAAAAATATTCCacaacaa
ataaacaaaagagGAACTCGCATCcaagaagaaaacgaaaacgaaCAGAG
ATTGAATATGTAAGAACGAAACGTGCTTCAGCACAAATTTCAAATACTGC
AGAAACTAAAAATCCACTCGCTTCTGAGTTAGTTAAAAGTTTAGAAAGCA
ATGAGAAAGATCTATTGTTTTTCAAACAAGTCGAAGGACAGTTAAGTCAA
TTTTCTGACAAACAAAGAGCTGTTGCTAAGATACTGGTGCAAAAAGCATT
GAATAAAGTTGAATTCATGGATAATGAACAGCTACATCAAACTTTGAATA
CTatctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040107-exon-sc0002308-1491911889:11027..12230 | TCONS_00040107-exon-sc0002308-1491911889:11027..12230 | Clytia hemisphaerica | exon |
| TCONS_00040107-exon-sc0002308-1510915933:11027..12230 | TCONS_00040107-exon-sc0002308-1510915933:11027..12230 | Clytia hemisphaerica | exon |
| TCONS_00040107-exon-sc0002308-1575043694:11027..12230 | TCONS_00040107-exon-sc0002308-1575043694:11027..12230 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002308 | supercontig | sc0002308:11027..12230 . |
Blast
The following BLAST results are available for this feature:
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