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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040102 ID=TCONS_00040102|Name=TCONS_00040102|organism=Clytia hemisphaerica|type=transcript|length=875bp
GCGATTGGaagtttatttcgaaaatttagttttttgatCGATTATGTACT
TTCCATTTCAGTTATGATTTTGGAGCAAGAATGGAAATTCATCATGTATA
ATTTCAAAGAATGCAAACTAAATCGTAGACAATCAGATTTGAAGGAACCC
CCCAAGTGTGAGTTTTATAAGGCTTTGTCTTTCATGGATTCAATAATAAA
AGTTAGaaacaatgacgtcatgaaaTACCCCGATGTTCCTGATGTTAGAG
TATTATTTAATACACAAATCGAGGAGCGCAAGCATGATTTGAGTCTGTTT
TTGCACTGCTGTCGAATGAATAACTTCAGATGTAAATGTAGTAGTTGGAG
ACGGTATGCGGATTTAGAGGACGGTGCGAATGAGATATCAGAAAAACGAA
TTTCTCAACCGTCATTTGGTGAGAATAATATATGCATTGACAACAATAAC
ACCAGCATCGATGCTCCAATAGGTCAAACCGAAAAATCATCACTTACAGT
ACGCATACTACAAAATACTGAAACTTCCTTATCACCAAATGATGTTGACC
AAACTCCTCAACATAAAATATCTACACAAGAACATCATACCACAGATTCT
GATGTTAAATTCTCTCTTATCAAGCAAGTTGAAAAACAACCTTGCATTTG
GAATCCAAAACATGCTCATTACAAAAACAGGAAAAAGACGAAAGAGACAT
GGGAAGAGATCAGAAAGATTGTAAAAACACCTGATAATGtCAGTTTGAAG
GACATATGGAAAACCCTTCGCGAGGATTTTAAAAGATGTCATGAAAGACg
aaacaagaaaaaagaagCCAGTTGCAACTTTtacaaagaattgaaattct
tAACAGATGTCGTGATTAAAAACCC Run BLAST on NCBI protein sequence of TCONS_00040102-protein >TCONS_00040102-protein ID=TCONS_00040102-protein|Name=TCONS_00040102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
AIGSLFRKFSFLIDYVLSISVMILEQEWKFIMYNFKECKLNRRQSDLKEP
PKCEFYKALSFMDSIIKVRNNDVMKYPDVPDVRVLFNTQIEERKHDLSLF
LHCCRMNNFRCKCSSWRRYADLEDGANEISEKRISQPSFGENNICIDNNN
TSIDAPIGQTEKSSLTVRILQNTETSLSPNDVDQTPQHKISTQEHHTTDS
DVKFSLIKQVEKQPCIWNPKHAHYKNRKKTKETWEEIRKIVKTPDNVSLK
DIWKTLREDFKRCHERRNKKKEASCNFYKELKFLTDVVIKN Run BLAST on NCBI transcript from alignment at sc0002308:9623..10935+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040102 ID=TCONS_00040102|Name=TCONS_00040102|organism=Clytia hemisphaerica|type=transcript|length=1313bp|location=Sequence derived from alignment at sc0002308:9623..10935+ (Clytia hemisphaerica)
GCGATTGGaagtttatttcgaaaatttagttttttgatCGATTATGTACT
TTCCATTTCAGTTATGATTTTGGAGCAAGAATGGAAATTCATCATGTATA
ATTTCAAAGAATGCAAACTAAATCGTAGACAATCAGATTTGAAGGAACCC
CCCAAGTGTGAGTTTTATAAGGCTTTGTCTTTCATGGATTCAATAATAAA
AGTTAGaaacaatgacgtcatgaaaTACCCCGATGTTCCTGATGTTAGAG
TATTATTTAATACACAAATCGAGGAGCGCAAGCATGATTTGAGTCTGTTT
TTGCACTGCTGTCGAATGAATAACTTCAGATGTAAATGTAGTAGTTGGAG
ACGGTATGCGGATTTAGAGGACGGTGCGAATGAGATATCAGAAAAACGAA
TTTCTCAACCGTCATTTGGTGAGAATAATATATGCATTGACAACAATAAC
ACCAGCATCGATGCTCCAATAGGTCAAACCGAAAAATCATCACTTACAGT
ACGCATACTACAAAATACTGAAACTTCCTTATCACCAAATGATGTTGACC
AAACTCCTCAACATAAAATATCTACACAAGAACATCATACCACAGATTCT
GATGTTAAATTCTCTCTTATCAAGCAAGTTGAAAAACAACCTTGCATTTG
GAATCCAAAACATGCTCATTACAAAAACAGGAAAAAGACGAAAGAGACAT
GGGAAGAGATCAGAAAGATTGTAAAAACACCTGATAATGGTAACTTTTTT
GTGTAACATTTTATTCTCAGTCTAAGTAATACTTAAGGTTTAATTTATCG
CTACACAAGCTCTCTCAAGACAGAACTTGATTCATTTTCACTCCTACTGA
AAATGGATAAACTAATGAAGAATCTGGGAGGACCTTCTCATACAATCATG
AGAGCTACCAACAAGGAATTAATAGCGAACTAAGGGAAAGGGTTCAACTT
TGTGAATTTTCCATAATTTGAAATAATGATATGTTCTGACGatatatatt
atttattataCAGAGACTTCGAGTTATAGATTGTTTTATAAAGGGTCTGA
AATTATGTTCCAGTTGAGATGTTATAAAACCTCGAGGAAACCTCGTCCTA
TAGTCTTTTATCCCTTTTATCAAGAGATGATGTTATTAATACTCTTTTCT
AactgtattttttttcttttactttagtCAGTTTGAAGGACATATGGAAA
ACCCTTCGCGAGGATTTTAAAAGATGTCATGAAAGACgaaacaagaaaaa
agaagCCAGTTGCAACTTTtacaaagaattgaaattcttAACAGATGTCG
TGATTAAAAACCC Coding sequence (CDS) from alignment at sc0002308:9623..10935+ >TCONS_00040102 ID=TCONS_00040102|Name=TCONS_00040102|organism=Clytia hemisphaerica|type=CDS|length=1746bp|location=Sequence derived from alignment at sc0002308:9623..10935+ (Clytia hemisphaerica)
GCGATTGGaagtttatttcgaaaatttagttttttgatCGATTATGTACT
TTCCATTTCAGTTATGATTTTGGAGCAAGAATGGAAATTCATCATGTATA
ATTTCAAAGAATGCAAACTAAATCGTAGACAATCAGATTTGAAGGAACCC
CCCAAGTGTGAGTTTTATAAGGCTTTGTCTTTCATGGATTCAATAATAAA
AGTTAGaaacaatgacgtcatgaaaTACCCCGATGTTCCTGATGTTAGAG
TATTATTTAATACACAAATCGAGGAGCGCAAGCATGATTTGAGTCTGTTT
TTGCACTGCTGTCGAATGAATAACTTCAGATGTAAATGTAGTAGTTGGAG
ACGGTATGCGGATTTAGAGGACGGTGCGAATGAGATATCAGAAAAACGAA
TTTCTCAACCGTCATTTGGTGAGAATAATATATGCATTGACAACAATAAC
ACCAGCATCGATGCTCCAATAGGTCAAACCGAAAAATCATCACTTACAGT
ACGCATACTACAAAATACTGAAACTTCCTTATCACCAAATGATGTTGACC
AAACTCCTCAACATAAAATATCTACACAAGAACATCATACCACAGATTCT
GATGTTAAATTCTCTCTTATCAAGCAAGTTGAAAAACAACCTTGCATTTG
GAATCCAAAACATGCTCATTACAAAAACAGGAAAAAGACGAAAGAGACAT
GGGAAGAGATCAGAAAGATTGTAAAAACACCTGATAATGtCAGTTTGAAG
GACATATGGAAAACCCTTCGCGAGGATTTTAAAAGATGTCATGAAAGACg
aaacaagaaaaaagaagCCAGTTGCAACTTTtacaaagaattgaaattct
tAACAGATGTCGTGATTAAAAACGCGATTGGaagtttatttcgaaaattt
agttttttgatCGATTATGTACTTTCCATTTCAGTTATGATTTTGGAGCA
AGAATGGAAATTCATCATGTATAATTTCAAAGAATGCAAACTAAATCGTA
GACAATCAGATTTGAAGGAACCCCCCAAGTGTGAGTTTTATAAGGCTTTG
TCTTTCATGGATTCAATAATAAAAGTTAGaaacaatgacgtcatgaaaTA
CCCCGATGTTCCTGATGTTAGAGTATTATTTAATACACAAATCGAGGAGC
GCAAGCATGATTTGAGTCTGTTTTTGCACTGCTGTCGAATGAATAACTTC
AGATGTAAATGTAGTAGTTGGAGACGGTATGCGGATTTAGAGGACGGTGC
GAATGAGATATCAGAAAAACGAATTTCTCAACCGTCATTTGGTGAGAATA
ATATATGCATTGACAACAATAACACCAGCATCGATGCTCCAATAGGTCAA
ACCGAAAAATCATCACTTACAGTACGCATACTACAAAATACTGAAACTTC
CTTATCACCAAATGATGTTGACCAAACTCCTCAACATAAAATATCTACAC
AAGAACATCATACCACAGATTCTGATGTTAAATTCTCTCTTATCAAGCAA
GTTGAAAAACAACCTTGCATTTGGAATCCAAAACATGCTCATTACAAAAA
CAGGAAAAAGACGAAAGAGACATGGGAAGAGATCAGAAAGATTGTAAAAA
CACCTGATAATGtCAGTTTGAAGGACATATGGAAAACCCTTCGCGAGGAT
TTTAAAAGATGTCATGAAAGACgaaacaagaaaaaagaagCCAGTTGCAA
CTTTtacaaagaattgaaattcttAACAGATGTCGTGATTAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040102-exon-sc0002308-1491911889:9623..10361 | TCONS_00040102-exon-sc0002308-1491911889:9623..10361 | Clytia hemisphaerica | exon |
| TCONS_00040102-exon-sc0002308-1510915933:9623..10361 | TCONS_00040102-exon-sc0002308-1510915933:9623..10361 | Clytia hemisphaerica | exon |
| TCONS_00040102-exon-sc0002308-1575043694:9623..10361 | TCONS_00040102-exon-sc0002308-1575043694:9623..10361 | Clytia hemisphaerica | exon |
| TCONS_00040102-exon-sc0002308-1491911889:10800..10935 | TCONS_00040102-exon-sc0002308-1491911889:10800..10935 | Clytia hemisphaerica | exon |
| TCONS_00040102-exon-sc0002308-1510915933:10800..10935 | TCONS_00040102-exon-sc0002308-1510915933:10800..10935 | Clytia hemisphaerica | exon |
| TCONS_00040102-exon-sc0002308-1575043694:10800..10935 | TCONS_00040102-exon-sc0002308-1575043694:10800..10935 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002308 | supercontig | sc0002308:9623..10935 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006578 | MADF-dom |
Blast
The following BLAST results are available for this feature:
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