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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040099 ID=TCONS_00040099|Name=TCONS_00040099|organism=Clytia hemisphaerica|type=transcript|length=1127bp
CTCAATATCACAAACATAAGTAGAATTCATTTCACTTGGAATTTATTAAT
CAATCAAAGGCTGCAATTTAAAATgtagcccaccatggttggacAATAGG
AANTTTATGATTTTCAAGATgcaaaaaaagtgtcttttcaagggTGGAAA
ACTAAATAGAAAATAACTGATTGAAATGTAGGAACAATATAActaagaat
cagaaaaaatgtACATAAGGCAAATTTTAGCTTAGGGATCCCTGTTCCTG
AAAAAACCAAGGTTGGCCCCAAaggagaaatatttaaaaatcatgTATAT
CCAGACACTAGAATACAAGCTATAATGCAAgagacattttaaaaattggT
GCTTTAAAAAAACCCTGTGTTTTGCCAAGGTCATGGACCTGTCTAAACCC
TGGAAGAATAATGAGGTGGTTCAGTGACATGTAGTCTTGACAAAACTTCC
AAATATTGGCTACTTGTTTTATAAAGTAGAGCTTGAACGGAGAAaaacat
agtgtgcagagggatCTAAACcccctatttttattttttcccccGCTATA
TGTGTATCCccctatttaaaaaatttttcgaacCCGTGCTATTGACAGCA
GCAGTCCACCAGTCATTCAAAAccgaaaacattgaaatttgtattaaaaa
ttgTATGAAAAAAAGAGTTTAAGATGGTGCCGCAGGCAAAGATTTAGCTA
TCTACACTTGTTTTTTAGTTGTCCCAtaccaaatatctaaatcaatataa
atatgatagatattttgaccaaaagttGTTATCCCTCCTATTTTTACTTG
ACAcccccctaaaatcttaaaccCCCCATTTTTTTCGGGAAATCTCCTAC
CTCCCTAAAAAGCATTGGAAAAGATGGATCCCCCCTGCCTGACACATCCT
TGTTTTAACATTTCTGTCAATGGTATTTATTGAAAACTTAAGATAATATT
TAACGTTGCCCACCATGTTTGGGcaagtgagaaaatttttgaattttggg
ggGCTGAAAGTGCTATTTTGAGCTATCTTTAATGAATCTGAATATCAGGA
CAGAGAAGAgacaatataaacaaaattcCCTAATGTTTCTCTGAAAAACA
TGCCAAAATGATCCAATACATgctaaa Run BLAST on NCBI transcript from alignment at sc0002307:2214..3340 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040099 ID=TCONS_00040099|Name=TCONS_00040099|organism=Clytia hemisphaerica|type=transcript|length=1127bp|location=Sequence derived from alignment at sc0002307:2214..3340 (Clytia hemisphaerica)
tttagcATGTATTGGATCATTTTGGCATGTTTTTCAGAGAAACATTAGGg
aattttgtttatattgtcTCTTCTCTGTCCTGATATTCAGATTCATTAAA
GATAGCTCAAAATAGCACTTTCAGCcccccaaaattcaaaaattttctca
cttgCCCAAACATGGTGGGCAACGTTAAATATTATCTTAAGTTTTCAATA
AATACCATTGACAGAAATGTTAAAACAAGGATGTGTCAGGCAGGGGGGAT
CCATCTTTTCCAATGCTTTTTAGGGAGGTAGGAGATTTCCCGAAAAAAAT
GGGGggtttaagattttaggggggTGTCAAGTAAAAATAGGAGGGATAAC
aacttttggtcaaaatatctatcatatttatattgatttagatatttggt
aTGGGACAACTAAAAAACAAGTGTAGATAGCTAAATCTTTGCCTGCGGCA
CCATCTTAAACTCTTTTTTTCATAcaatttttaatacaaatttcaatgtt
ttcggTTTTGAATGACTGGTGGACTGCTGCTGTCAATAGCACGGgttcga
aaaattttttaaatagggGGATACACATATAGCgggggaaaaaataaaaa
taggggGTTTAGatccctctgcacactatgtttTTCTCCGTTCAAGCTCT
ACTTTATAAAACAAGTAGCCAATATTTGGAAGTTTTGTCAAGACTACATG
TCACTGAACCACCTCATTATTCTTCCAGGGTTTAGACAGGTCCATGACCT
TGGCAAAACACAGGGTTTTTTTAAAGCAccaatttttaaaatgtctcTTG
CATTATAGCTTGTATTCTAGTGTCTGGATATAcatgatttttaaatattt
ctcctTTGGGGCCAACCTTGGTTTTTTCAGGAACAGGGATCCCTAAGCTA
AAATTTGCCTTATGTacattttttctgattcttagTTATATTGTTCCTAC
ATTTCAATCAGTTATTTTCTATTTAGTTTTCCAcccttgaaaagacactt
tttttgcATCTTGAAAATCATAAANTTCCTATTgtccaaccatggtgggc
tacATTTTAAATTGCAGCCTTTGATTGATTAATAAATTCCAAGTGAAATG
AATTCTACTTATGTTTGTGATATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040099-exon-sc0002307-1491911889:2214..3340 | TCONS_00040099-exon-sc0002307-1491911889:2214..3340 | Clytia hemisphaerica | exon |
| TCONS_00040099-exon-sc0002307-1510915933:2214..3340 | TCONS_00040099-exon-sc0002307-1510915933:2214..3340 | Clytia hemisphaerica | exon |
| TCONS_00040099-exon-sc0002307-1575043694:2214..3340 | TCONS_00040099-exon-sc0002307-1575043694:2214..3340 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002307 | supercontig | sc0002307:2214..3340 . |
Blast
The following BLAST results are available for this feature:
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