|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040098 ID=TCONS_00040098|Name=TCONS_00040098|organism=Clytia hemisphaerica|type=transcript|length=993bp
aaaaaagctgaaaagtgaGATCTGATATGCGAGCTCTCGAATGCTCACGG
GAGACATTAattgataaatataaaaaactaattgacaaatgacgtcataa
tgaccTATGcgtataataattttttttttaattgcttttcttataaataa
ataatatctTTTGCACGTTCGTGCTACATTCCCCCAACGTGGAAAAGTGA
AATGTCCATCCAGATACAGTTCAGTTCTTGAACATTTTATTGAGTTCTTG
CAAAATGTCCATTTCATCCACATGATGAATTACAACCAAATCTCTGACAC
ATCTGGTAGTTTTACGTTTGGCAGTTTCATTTGAATTGACATACTCAACA
TCAACTTTACAAATTTTACCATCTTTACTAAAATGAACAGTTTTTATTCT
TCCAAGATGATATGTCTTGGCAATGGAAGAATCATTCTTAAGGAAAAGGA
CAATGTCACCCTTTTTCAAGTGCTTGTCGTTCTTAAACCACTTTGGTTGT
GAAATAAGCTTTGGAACATGTGAGATCAACCAATTTTCAAACCACGTGTT
GAAGATGTCGATATTCGTTTGGATGATCTTGTTGAATGTTGATGGAACGT
TGACTGGACCAATGGGACCTCTCTCGTTGTTGCGTCCAAGAAGAAGTCTG
TTGGTCCATGGTCCATGCTTTCGAAATCAGATGTGATGGAGCCAAGTGCG
AGAGGCATGTTATTGAGACTGTTCGAAATCTCTAATGCCACCGTTTCCCA
TTGAAGGATTGATAGTCGTGATTGAGAAATCGTCCTCTCGATCGATCTCG
AAATCTCCTTGATTTTGCGTTCAACCTTTCCTTGGTAGTTGTGTGCGCCA
ACTGGACTGATGTCGAATTCAATGGAGTAGTTGCGATGAAGCCTGGCTCG
TAAGTCGTGGAAGTCGATTTTGACGTCTTCACATCCTTTGATGAGTTGGC
TACCAGAGTCGATGAAGAGCTTCTGAGGATAACCATGGTGAGA Run BLAST on NCBI protein sequence of TCONS_00040098-protein >TCONS_00040098-protein ID=TCONS_00040098-protein|Name=TCONS_00040098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
SHHGYPQKLFIDSGSQLIKGCEDVKIDFHDLRARLHRNYSIEFDISPVGA
HNYQGKVERKIKEISRSIERTISQSRLSILQWETVALEISNSLNNMPLAL
GSITSDFESMDHGPTDFFLDATTREVPLVQSTFHQHSTRSSKRISTSSTR
GLKIG Run BLAST on NCBI transcript from alignment at sc0002306:18990..19982 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040098 ID=TCONS_00040098|Name=TCONS_00040098|organism=Clytia hemisphaerica|type=transcript|length=993bp|location=Sequence derived from alignment at sc0002306:18990..19982 (Clytia hemisphaerica)
TCTCACCATGGTTATCCTCAGAAGCTCTTCATCGACTCTGGTAGCCAACT
CATCAAAGGATGTGAAGACGTCAAAATCGACTTCCACGACTTACGAGCCA
GGCTTCATCGCAACTACTCCATTGAATTCGACATCAGTCCAGTTGGCGCA
CACAACTACCAAGGAAAGGTTGAACGCAAAATCAAGGAGATTTCGAGATC
GATCGAGAGGACGATTTCTCAATCACGACTATCAATCCTTCAATGGGAAA
CGGTGGCATTAGAGATTTCGAACAGTCTCAATAACATGCCTCTCGCACTT
GGCTCCATCACATCTGATTTCGAAAGCATGGACCATGGACCAACAGACTT
CTTCTTGGACGCAACAACGAGAGAGGTCCCATTGGTCCAGTCAACGTTCC
ATCAACATTCAACAAGATCATCCAAACGAATATCGACATCTTCAACACGT
GGTTTGAAAATTGGTTGATCTCACATGTTCCAAAGCTTATTTCACAACCA
AAGTGGTTTAAGAACGACAAGCACTTGAAAAAGGGTGACATTGTCCTTTT
CCTTAAGAATGATTCTTCCATTGCCAAGACATATCATCTTGGAAGAATAA
AAACTGTTCATTTTAGTAAAGATGGTAAAATTTGTAAAGTTGATGTTGAG
TATGTCAATTCAAATGAAACTGCCAAACGTAAAACTACCAGATGTGTCAG
AGATTTGGTTGTAATTCATCATGTGGATGAAATGGACATTTTGCAAGAAC
TCAATAAAATGTTCAAGAACTGAACTGTATCTGGATGGACATTTCACTTT
TCCACGTTGGGGGAATGTAGCACGAACGTGCAAAagatattatttattta
taagaaaagcaattaaaaaaaaaattattatacgCATAggtcattatgac
gtcatttgtcaattagttttttatatttatcaatTAATGTCTCCCGTGAG
CATTCGAGAGCTCGCATATCAGATCtcacttttcagctttttt Coding sequence (CDS) from alignment at sc0002306:18990..19982 >TCONS_00040098 ID=TCONS_00040098|Name=TCONS_00040098|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at sc0002306:18990..19982 (Clytia hemisphaerica)
TCTCACCATGGTTATCCTCAGAAGCTCTTCATCGACTCTGGTAGCCAACT
CATCAAAGGATGTGAAGACGTCAAAATCGACTTCCACGACTTACGAGCCA
GGCTTCATCGCAACTACTCCATTGAATTCGACATCAGTCCAGTTGGCGCA
CACAACTACCAAGGAAAGGTTGAACGCAAAATCAAGGAGATTTCGAGATC
GATCGAGAGGACGATTTCTCAATCACGACTATCAATCCTTCAATGGGAAA
CGGTGGCATTAGAGATTTCGAACAGTCTCAATAACATGCCTCTCGCACTT
GGCTCCATCACATCTGATTTCGAAAGCATGGACCATGGACCAACAGACTT
CTTCTTGGACGCAACAACGAGAGAGGTCCCATTGGTCCAGTCAACGTTCC
ATCAACATTCAACAAGATCATCCAAACGAATATCGACATCTTCAACACGT
GGTTTGAAAATTGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040098-exon-sc0002306-1491911889:18990..19982 | TCONS_00040098-exon-sc0002306-1491911889:18990..19982 | Clytia hemisphaerica | exon |
| TCONS_00040098-exon-sc0002306-1510915933:18990..19982 | TCONS_00040098-exon-sc0002306-1510915933:18990..19982 | Clytia hemisphaerica | exon |
| TCONS_00040098-exon-sc0002306-1575043694:18990..19982 | TCONS_00040098-exon-sc0002306-1575043694:18990..19982 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002306 | supercontig | sc0002306:18990..19982 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
