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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040094 ID=TCONS_00040094|Name=TCONS_00040094|organism=Clytia hemisphaerica|type=transcript|length=1410bp
CTCGTGTTCACTCGCAATACAAAGCATTTAAACTTGCAAGAGAAGAGGCC
CAATCTAAGTCTGACGTTATCACCATTCAGCTCGATTGGTCAGAAAATAC
CAAAATGCGACAAAGCCGTGAAGAAAAGTCAGCGTATTATCATGAAGATA
CAGTTTGCCTTCACCCAATGTACATATGGTTCGAAATAAGCAGATATTCT
TGTTGCGCCATCAGTGATTGCACTGACCATAAAGCTTCTGCAGTCATGAC
AAGCATTCAACCAATTCTTGATGAACTAGTGAAGACTGGTGCTAAGAAAA
TAAGCTTTATTTCTGATTTGCTAACATCTCAGTACAGAAACAGAACCATG
TGCTGGTTATTACATTCATATGCTgaataataaaattgatattaaATGGA
TTTGGCTTGAAAGTGGACATGGTAAAGGTATCCCAGATGGCATTGGGGCA
ACAGTAAAGAAAGNAAAGCTCCCGCAGTCATGACAAGCATTCAACCAATT
CTTGATGAACTAGTGAAGACTGGTGctaagaaaataaactttattTCTGA
TTCGCTAACATCTCAGTACAGAAACAGAACCATGTGCTGGCTATTACatt
catattctgaataataaaattgatattaaATGGATTTGGCTTGAAAGTGG
ACATGGTAAAGGTATCCCAGATGGCATTGGGGCAACATTAAAGAAAGCTC
TTAAGGACATCTTATCATTCAATCCAGACCAACCAGTCTTCACCGTTCAC
GATCTTCTTATTCTGTGTAACCTTCAAGAGTCTGTtccctctaatttttg
tcctttccgcaacatTATTTGAGaactaatttattttatttaggaATACA
CAAAAAGTCATACTTATgatttttaagcaatttaaaaCTGTAAAATTGAA
TACTAAATACTTTAAACCATGAATAATTGCTTTCTtgacagtttttgaaa
acagttgcatacttaaaatttcagtttatgtcctttccgcaacagTTTGG
TAAATTTTGATAGTGATAAGTAGTTTTAAGAGCAGAAAACAGTTGTTCTA
AGTTGGTAACCAAGCTGGTCTTTATTTCGACCCAGTCTTGATGNAAATTT
CAGATTatgtcctttccgcaacagTTTGGTAAATTTTGATAGTGATAAGT
AGTTTTAAGAGCAGAAAACAGTTGTTCTAAGTTGGTAACCAAGCTGGTCT
TTATTTCGACCCAGTCTTGATGTTCCTCATTCAACAGGAAATTTTAAATG
AGCTAAACTTGGTTTCAATaatttcttaacaaaaattGATGACTCTACGA
GAATGGTAAGGAAAGACTTAAAATTATCAGAAATCTTTGGGGCAGACTTC
AGATTCAAGAAAGGCAATACTATAACTaactttttagggcaaaatattAG
TTCCTaaacc Run BLAST on NCBI protein sequence of TCONS_00040094-protein >TCONS_00040094-protein ID=TCONS_00040094-protein|Name=TCONS_00040094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
RVHSQYKAFKLAREEAQSKSDVITIQLDWSENTKMRQSREEKSAYYHEDT
VCLHPMYIWFEISRYSCCAISDCTDHKASAVMTSIQPILDELVKTGAKKI
SFISDLLTSQYRNRTMCWLLHSYAE Run BLAST on NCBI transcript from alignment at sc0002306:6064..7473 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040094 ID=TCONS_00040094|Name=TCONS_00040094|organism=Clytia hemisphaerica|type=transcript|length=1410bp|location=Sequence derived from alignment at sc0002306:6064..7473 (Clytia hemisphaerica)
ggtttAGGAACTaatattttgccctaaaaagttAGTTATAGTATTGCCTT
TCTTGAATCTGAAGTCTGCCCCAAAGATTTCTGATAATTTTAAGTCTTTC
CTTACCATTCTCGTAGAGTCATCaatttttgttaagaaattATTGAAACC
AAGTTTAGCTCATTTAAAATTTCCTGTTGAATGAGGAACATCAAGACTGG
GTCGAAATAAAGACCAGCTTGGTTACCAACTTAGAACAACTGTTTTCTGC
TCTTAAAACTACTTATCACTATCAAAATTTACCAAActgttgcggaaagg
acatAATCTGAAATTTNCATCAAGACTGGGTCGAAATAAAGACCAGCTTG
GTTACCAACTTAGAACAACTGTTTTCTGCTCTTAAAACTACTTATCACTA
TCAAAATTTACCAAActgttgcggaaaggacataaactgaaattttaagt
atgcaactgttttcaaaaactgtcaAGAAAGCAATTATTCATGGTTTAAA
GTATTTAGTATTCAATTTTACAGttttaaattgcttaaaaatcATAAGTA
TGACTTTTTGTGTATtcctaaataaaataaattagttCTCAAATAatgtt
gcggaaaggacaaaaattagagggaACAGACTCTTGAAGGTTACACAGAA
TAAGAAGATCGTGAACGGTGAAGACTGGTTGGTCTGGATTGAATGATAAG
ATGTCCTTAAGAGCTTTCTTTAATGTTGCCCCAATGCCATCTGGGATACC
TTTACCATGTCCACTTTCAAGCCAAATCCATttaatatcaattttattat
tcagaatatgaatGTAATAGCCAGCACATGGTTCTGTTTCTGTACTGAGA
TGTTAGCGAATCAGAaataaagtttattttcttagCACCAGTCTTCACTA
GTTCATCAAGAATTGGTTGAATGCTTGTCATGACTGCGGGAGCTTTNCTT
TCTTTACTGTTGCCCCAATGCCATCTGGGATACCTTTACCATGTCCACTT
TCAAGCCAAATCCATttaatatcaattttattattcAGCATATGAATGTA
ATAACCAGCACATGGTTCTGTTTCTGTACTGAGATGTTAGCAAATCAGAA
ATAAAGCTTATTTTCTTAGCACCAGTCTTCACTAGTTCATCAAGAATTGG
TTGAATGCTTGTCATGACTGCAGAAGCTTTATGGTCAGTGCAATCACTGA
TGGCGCAACAAGAATATCTGCTTATTTCGAACCATATGTACATTGGGTGA
AGGCAAACTGTATCTTCATGATAATACGCTGACTTTTCTTCACGGCTTTG
TCGCATTTTGGTATTTTCTGACCAATCGAGCTGAATGGTGATAACGTCAG
ACTTAGATTGGGCCTCTTCTCTTGCAAGTTTAAATGCTTTGTATTGCGAG
TGAACACGAG Coding sequence (CDS) from alignment at sc0002306:6064..7473 >TCONS_00040094 ID=TCONS_00040094|Name=TCONS_00040094|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0002306:6064..7473 (Clytia hemisphaerica)
ttattcAGCATATGAATGTAATAACCAGCACATGGTTCTGTTTCTGTACT
GAGATGTTAGCAAATCAGAAATAAAGCTTATTTTCTTAGCACCAGTCTTC
ACTAGTTCATCAAGAATTGGTTGAATGCTTGTCATGACTGCAGAAGCTTT
ATGGTCAGTGCAATCACTGATGGCGCAACAAGAATATCTGCTTATTTCGA
ACCATATGTACATTGGGTGAAGGCAAACTGTATCTTCATGATAATACGCT
GACTTTTCTTCACGGCTTTGTCGCATTTTGGTATTTTCTGACCAATCGAG
CTGAATGGTGATAACGTCAGACTTAGATTGGGCCTCTTCTCTTGCAAGTT
TAAATGCTTTGTATTGCGAGTGAACACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040094-exon-sc0002306-1491911889:6064..7473 | TCONS_00040094-exon-sc0002306-1491911889:6064..7473 | Clytia hemisphaerica | exon |
| TCONS_00040094-exon-sc0002306-1510915933:6064..7473 | TCONS_00040094-exon-sc0002306-1510915933:6064..7473 | Clytia hemisphaerica | exon |
| TCONS_00040094-exon-sc0002306-1575043694:6064..7473 | TCONS_00040094-exon-sc0002306-1575043694:6064..7473 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002306 | supercontig | sc0002306:6064..7473 . |
Blast
The following BLAST results are available for this feature:
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