TCONS_00040089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040089
Unique NameTCONS_00040089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length664

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040089 ID=TCONS_00040089|Name=TCONS_00040089|organism=Clytia hemisphaerica|type=transcript|length=664bp
GGATGGCTGTCTAGTAGACCTGAAGGACTGTGGCATGAGAGAGAGAAACC
CAATTATTAAAACAGCTAAACCAAAGGGCAAGAATGACGGTTCTGACACC
TTGTGGAGAGACCGAAGAATTTCAGGTTGAGGAAGTAGTTAAGCAAGGTA
CAATATTTGGACCATTGCTGTGCTGCTGCAACACATCAAAGATAGCAGAA
ATTTGAGAAGACGCAAGAACAGTAGTCAGCCCAAACCTATATATAGCCCC
CGTAGATAATATTACAGCTGCAGGGACTCCCTCATTGGTTAAGTGTGTTG
GGAGAAAGTTGCAAATAATGGAGCATGAAAAGCGGTTCACTTTCAACACG
GGAAAAACAAATTACCTGATAACTAAAACCGGAAAGAGGAAAGACGAGGT
TCAAGAGCTGGATATGGATGTCAAAAGAGGAGAAATTGAAAGAGTTGCAA
GCTACAAAATCTTAGGCAACTGGATCGCAGAAGATGGCAAACTTTCTGAG
CAGTCAAAGGAAATTGAAAGACGCAGTTGGGCTATGTTAAATGAGCTGAA
AAGAACAGTGAAGGAAGAATGGTTGGGATCAATGTCCACAGATGCAGCAC
TGCTAGTTTATGAGAGAACAGTCGTCCCAACTCTGATATACAACCTGGAA
TGCTGGACAAGGAT
Run BLAST on NCBI

protein sequence of TCONS_00040089-protein

>TCONS_00040089-protein ID=TCONS_00040089-protein|Name=TCONS_00040089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MEHEKRFTFNTGKTNYLITKTGKRKDEVQELDMDVKRGEIERVASYKILG
NWIAEDGKLSEQSKEIERRSWAMLNELKRTVKEEWLGSMSTDAALLVYER
TVVPTLIYNLECWTR
Run BLAST on NCBI

transcript from alignment at sc0002304:18478..19141

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040089 ID=TCONS_00040089|Name=TCONS_00040089|organism=Clytia hemisphaerica|type=transcript|length=664bp|location=Sequence derived from alignment at sc0002304:18478..19141 (Clytia hemisphaerica)
ATCCTTGTCCAGCATTCCAGGTTGTATATCAGAGTTGGGACGACTGTTCT
CTCATAAACTAGCAGTGCTGCATCTGTGGACATTGATCCCAACCATTCTT
CCTTCACTGTTCTTTTCAGCTCATTTAACATAGCCCAACTGCGTCTTTCA
ATTTCCTTTGACTGCTCAGAAAGTTTGCCATCTTCTGCGATCCAGTTGCC
TAAGATTTTGTAGCTTGCAACTCTTTCAATTTCTCCTCTTTTGACATCCA
TATCCAGCTCTTGAACCTCGTCTTTCCTCTTTCCGGTTTTAGTTATCAGG
TAATTTGTTTTTCCCGTGTTGAAAGTGAACCGCTTTTCATGCTCCATTAT
TTGCAACTTTCTCCCAACACACTTAACCAATGAGGGAGTCCCTGCAGCTG
TAATATTATCTACGGGGGCTATATATAGGTTTGGGCTGACTACTGTTCTT
GCGTCTTCTCAAATTTCTGCTATCTTTGATGTGTTGCAGCAGCACAGCAA
TGGTCCAAATATTGTACCTTGCTTAACTACTTCCTCAACCTGAAATTCTT
CGGTCTCTCCACAAGGTGTCAGAACCGTCATTCTTGCCCTTTGGTTTAGC
TGTTTTAATAATTGGGTTTCTCTCTCTCATGCCACAGTCCTTCAGGTCTA
CTAGACAGCCATCC

Coding sequence (CDS) from alignment at sc0002304:18478..19141

>TCONS_00040089 ID=TCONS_00040089|Name=TCONS_00040089|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0002304:18478..19141 (Clytia hemisphaerica)
CCTTGTCCAGCATTCCAGGTTGTATATCAGAGTTGGGACGACTGTTCTCT
CATAAACTAGCAGTGCTGCATCTGTGGACATTGATCCCAACCATTCTTCC
TTCACTGTTCTTTTCAGCTCATTTAACATAGCCCAACTGCGTCTTTCAAT
TTCCTTTGACTGCTCAGAAAGTTTGCCATCTTCTGCGATCCAGTTGCCTA
AGATTTTGTAGCTTGCAACTCTTTCAATTTCTCCTCTTTTGACATCCATA
TCCAGCTCTTGAACCTCGTCTTTCCTCTTTCCGGTTTTAGTTATCAGGTA
ATTTGTTTTTCCCGTGTTGAAAGTGAACCGCTTTTCATGCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024307XLOC_024307Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040089-proteinTCONS_00040089-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040089-exon-sc0002304-1491911889:18478..19141TCONS_00040089-exon-sc0002304-1491911889:18478..19141Clytia hemisphaericaexon
TCONS_00040089-exon-sc0002304-1510915933:18478..19141TCONS_00040089-exon-sc0002304-1510915933:18478..19141Clytia hemisphaericaexon
TCONS_00040089-exon-sc0002304-1575043694:18478..19141TCONS_00040089-exon-sc0002304-1575043694:18478..19141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002304supercontigsc0002304:18478..19141 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19039	1.69659	2.36192	2.63363	1.88684	1.55349	1.92074	3.16054	0.820347	1.85488	1.76566	2.17243	1.54237	1.23865	0.672384	1.22925	0.386252	1.07945	0.911758	1.76514	1.39471	1.09127	0.277522	0.962199	0.982582	2.3028	1.67074	0.724689	0.448121	0.725941
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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