TCONS_00040088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040088
Unique NameTCONS_00040088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040088 ID=TCONS_00040088|Name=TCONS_00040088|organism=Clytia hemisphaerica|type=transcript|length=301bp
AGCCCCACCAAAGTCAATTTCAAAGTATGTCAATccacaaataaaaattt
ttctctttgtttttatttcaaaatgttcgAACACTTTgttttgttatgat
tcgaaAGTACTTAGTGCTCTGTTTACATTGAGAGATCAAcctttgatttc
aaaatgttcgaacgttcgaacacTTTGTTTTGTTATGATATGATTCGAAA
GCACTTAGTGCTCTGTTTACATTGAGAGATCAACCTTGTTCTCAAGTGAT
acattgtttcttttttcttaactAGCTACTTGGCAATCATAATGAATGAG
G
Run BLAST on NCBI

transcript from alignment at sc0002304:14524..14824

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040088 ID=TCONS_00040088|Name=TCONS_00040088|organism=Clytia hemisphaerica|type=transcript|length=301bp|location=Sequence derived from alignment at sc0002304:14524..14824 (Clytia hemisphaerica)
CCTCATTCATTATGATTGCCAAGTAGCTagttaagaaaaaagaaacaatg
tATCACTTGAGAACAAGGTTGATCTCTCAATGTAAACAGAGCACTAAGTG
CTTTCGAATCATATCATAACAAAACAAAgtgttcgaacgttcgaacattt
tgaaatcaaaggTTGATCTCTCAATGTAAACAGAGCACTAAGTACTttcg
aatcataacaaaacAAAGTGTTcgaacattttgaaataaaaacaaagaga
aaaatttttatttgtggATTGACATACTTTGAAATTGACTTTGGTGGGGC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024306XLOC_024306Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040088-exon-sc0002304-1491911889:14524..14824TCONS_00040088-exon-sc0002304-1491911889:14524..14824Clytia hemisphaericaexon
TCONS_00040088-exon-sc0002304-1510915933:14524..14824TCONS_00040088-exon-sc0002304-1510915933:14524..14824Clytia hemisphaericaexon
TCONS_00040088-exon-sc0002304-1575043694:14524..14824TCONS_00040088-exon-sc0002304-1575043694:14524..14824Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002304supercontigsc0002304:14524..14824 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15545	0.751162	2.61651	1.27992	0	0	2.97102	0.927143	0.649115	0	0.390207	0.769521	1.5369	1.59609	0.2187	0.234699	0	0	0	0	2.2343	1.08981	0	0.802964	0.413517	1.10716	0.528115	1.12724	0	0.43554
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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