TCONS_00040087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040087
Unique NameTCONS_00040087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040087 ID=TCONS_00040087|Name=TCONS_00040087|organism=Clytia hemisphaerica|type=transcript|length=460bp
GGTACATTGCATCAGACTTCCAATCACCCATGACTGCAATGGAGTCAAGA
GGTACCCCGGCCTCCAAAGCAAAGGTGGCCCCACCACGTCTGAACGAGTG
TGACCCATATTGACGGGGTGAGAGCCCAGAACGAGAGAGGTGAAGGATGC
ACATAAAATCCCGGTACACAAAAACCCGATTTGAGGCAAGGTGGGAATCC
CTCCAACAAAAGGCTTGATCGCAAGGAAGGGCTCCCGGGGTGAGGGAAAA
AGCACGGGACACAGCCAAAACCGGACAGAGGTGAGAAGAGGGTATGGCAA
CCAGTGGTATAGTAACAGTAACGTTGACCAAGCTGGATGGTTTTGCTCCT
ACACCTCACTCTGATATGCACCCCTGAACCAACAAACGAAAAATCAGACC
TAGTGAGAAAGGTACTAGACGAGAAGTCCCTCTGGGAAACAGGCAAAAGG
TGGCTCTTCC
Run BLAST on NCBI

transcript from alignment at sc0002303:21761..22220

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040087 ID=TCONS_00040087|Name=TCONS_00040087|organism=Clytia hemisphaerica|type=transcript|length=460bp|location=Sequence derived from alignment at sc0002303:21761..22220 (Clytia hemisphaerica)
GGAAGAGCCACCTTTTGCCTGTTTCCCAGAGGGACTTCTCGTCTAGTACC
TTTCTCACTAGGTCTGATTTTTCGTTTGTTGGTTCAGGGGTGCATATCAG
AGTGAGGTGTAGGAGCAAAACCATCCAGCTTGGTCAACGTTACTGTTACT
ATACCACTGGTTGCCATACCCTCTTCTCACCTCTGTCCGGTTTTGGCTGT
GTCCCGTGCTTTTTCCCTCACCCCGGGAGCCCTTCCTTGCGATCAAGCCT
TTTGTTGGAGGGATTCCCACCTTGCCTCAAATCGGGTTTTTGTGTACCGG
GATTTTATGTGCATCCTTCACCTCTCTCGTTCTGGGCTCTCACCCCGTCA
ATATGGGTCACACTCGTTCAGACGTGGTGGGGCCACCTTTGCTTTGGAGG
CCGGGGTACCTCTTGACTCCATTGCAGTCATGGGTGATTGGAAGTCTGAT
GCAATGTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024305XLOC_024305Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040087-exon-sc0002303-1491911889:21761..22220TCONS_00040087-exon-sc0002303-1491911889:21761..22220Clytia hemisphaericaexon
TCONS_00040087-exon-sc0002303-1510915933:21761..22220TCONS_00040087-exon-sc0002303-1510915933:21761..22220Clytia hemisphaericaexon
TCONS_00040087-exon-sc0002303-1575043694:21761..22220TCONS_00040087-exon-sc0002303-1575043694:21761..22220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002303supercontigsc0002303:21761..22220 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.503885	0.500089	0	0	1.43013	1.18885	1.38743	1.76663	1.52925	1.81291	0.120273	0.845451	1.87709	0.218245	0	0.556702	0.207638	0.777207	0	0.382934	0.186717	0.568254	0.923928	0.181454	1.22836	1.57367	0.224887	0	0.222799	0.270399
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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